Rmu_co8457323.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8457323.1
OG0000630
Physical Location & Seq
Reverse (-)
1 .. 888
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8457323.1_g000001.1.cds

Sequence Viewer

Length: 459 bp
atggagatttctgaagcccctcccttccggccaagagaccgccggccggacgccctcggaagcttcctagtcctccccgacgagctcatctgtgccgtcttggaattgctctctcctcgcgacgttgctcgcctctcctgcgttagcagtgtgatgtatatattttgcaatgaagagccactctggttgagtttatgcctcaacacactgaatggtccgctccagtacaaaggctcctggaagaagacggtgctgcatttggagaatgtgtcgtatgaactcaacgaggcttgcagaaaaccactgagttttgatggattcgactctttgttcttgtacagaagattatacaggtgtcataccacattgaatggtttttcttttgacaatgggaatgtggaaagaaaggacgagatcacattggaagagttttcttgtgattatgacgggaagaaaccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

153

Amino Acids

17.65

Weight (kDa)

5.1

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 40, 218
AcoI YGGCCR 2 cut(s) 29, 44
AcuI CTGAAG 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 227, 338
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 2 cut(s) 63, 85
AluI AGCT 2 cut(s) 63, 85
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 2 cut(s) 29, 44
ApeKI GCWGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 105
BseX3I CGGCCG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 31, 46
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 3 cut(s) 28, 43, 47
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 30
BsnI GGCC 2 cut(s) 31, 46
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 1 cut(s) 414
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 2 cut(s) 40, 218
BspANI GGCC 2 cut(s) 31, 46
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 336
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 414
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 2 cut(s) 168, 420
BstACI GRCGYC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 44, 130, 292
BstDEI CTNAG 1 cut(s) 305
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 1 cut(s) 417
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 414
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 240
BstV2I GAAGAC 1 cut(s) 251
BstZI CGGCCG 1 cut(s) 44
BsuRI GGCC 2 cut(s) 31, 46
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 3 cut(s) 154, 206, 302
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 44, 130, 292
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 226, 337
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviJI RGCY 8 cut(s) 17, 31, 46, 63, 85, 178, 234, 290
CviKI_1 RGCY 8 cut(s) 17, 31, 46, 63, 85, 178, 234, 290
CviQI GTAC 2 cut(s) 226, 337
DdeI CTNAG 1 cut(s) 305
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
EaeI YGGCCR 2 cut(s) 29, 44
EagI CGGCCG 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 168, 420
EarI CTCTTC 2 cut(s) 168, 420
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 215
Eco52I CGGCCG 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 87
FaiI YATR 7 cut(s) 159, 161, 196, 276, 349, 360, 444
Fnu4HI GCNGC 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 254
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 31, 46
HapII CCGG 3 cut(s) 28, 43, 47
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 2 cut(s) 318, 323
HpaII CCGG 3 cut(s) 28, 43, 47
Hpy188I TCNGA 2 cut(s) 13, 59
Hpy188III TCNNGA 1 cut(s) 119
Hpy99I CGWCG 2 cut(s) 83, 125
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 168, 256, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 414
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 2 cut(s) 225, 239
LpnPI CCDG 9 cut(s) 41, 56, 60, 151, 169, 223, 236, 250, 337
Lsp1109I GCAGC 1 cut(s) 240
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 123
MalI GATC 1 cut(s) 416
MbiI CCGCTC 1 cut(s) 220
MboI GATC 1 cut(s) 414
MboII GAAGA 5 cut(s) 185, 253, 256, 354, 437
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 104
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 7 cut(s) 30, 65, 83, 126, 143, 209, 280
MroNI GCCGGC 1 cut(s) 42
MspI CCGG 3 cut(s) 28, 43, 47
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 138
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 1 cut(s) 414
NgoMIV GCCGGC 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 235
NruI TCGCGA 1 cut(s) 120
PciSI GCTCTTC 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 236
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 215
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 2 cut(s) 227, 338
RsaNI GTAC 2 cut(s) 226, 337
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 168
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 87
SetI ASST 4 cut(s) 65, 87, 126, 356
SinI GGWCC 1 cut(s) 215
Sse9I AATT 1 cut(s) 104
SsiI CCGC 2 cut(s) 40, 218
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 104
TatI WGTACW 2 cut(s) 225, 336
TfiI GAWTC 1 cut(s) 318
TscAI CASTG 3 cut(s) 154, 213, 309
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 186, 291
TspRI CASTG 3 cut(s) 154, 213, 309
VpaK11BI GGWCC 1 cut(s) 215
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.