Rh7CG490700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000630
Physical Location & Seq
Reverse (-)
65934732 .. 65935853
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG490700.1

Sequence Viewer

Length: 618 bp
ATGAGCAACTGTGTAATCAAAATTTTTGTTGAGGAAGGACTGGAAACGTCACTTTATGGATTAGGTGCTGAGCTTGAGTTCTACAGTCTCCCAGGCAAAGTCAAATCCCCTCTGAAAAATCACATACCTGACGTTTTGGCAAGTGGGATCATTTATCTTGAAAATGGAACTTATAAAATTGTACCTTGGGATGGCAACGGAGTTCCTGATGTGATTGCTAACTGCAATTTTATTCCGGAGAAGGTCAAAGGAGATGTTTCTCCTTTTGGTGTATGGAGGAAGAAACAATTTGAATACAGAAAAGCTGGGGTCTCAACAAACGAATCCATCAGTTCAGCTGAATATACAAGGATATGGCCATATCTCATAACAAAACGATGCAAAGGAAAAATATATGCAGAGTTAAGAGATACTGTGTCAATGGACGATGAACTGAACTTAGCTTCCTTCCTGGGAGAGAAGCTCCGCAACCTCCATCTCTTGCCCCATCCACCTCTTAATATCTCAACTTTCTCAGATATTGAACAGGAATCAGATTTTCCCTTCACCAACGGTAGTATGGAAGCTGTTCCCCATAAATCAAACATTCCTGCTGAAAGGGATATATATATTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

205

Amino Acids

23.08

Weight (kDa)

5.58

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 1 cut(s) 466
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 161, 293, 524
AjnI CCWGG 2 cut(s) 91, 450
AloI GAACNNNNNNTCC 2 cut(s) 428, 460
AluBI AGCT 6 cut(s) 73, 305, 338, 443, 463, 566
AluI AGCT 6 cut(s) 73, 305, 338, 443, 463, 566
Alw26I GTCTC 2 cut(s) 92, 316
AlwI GGATC 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 567
AsuHPI GGTGA 1 cut(s) 538
BalI TGGCCA 1 cut(s) 358
BccI CCATC 4 cut(s) 185, 335, 483, 495
BciT130I CCWGG 2 cut(s) 93, 452
BcoDI GTCTC 2 cut(s) 92, 316
BfmI CTRYAG 1 cut(s) 82
BlpI GCTNAGC 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 93, 452
BmrFI CCNGG 2 cut(s) 93, 452
BmsI GCATC 1 cut(s) 368
BplI GAGNNNNNCTC 2 cut(s) 447, 479
Bpu1102I GCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 3 cut(s) 91, 185, 451
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 45
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 2 cut(s) 93, 452
BseDI CCNNGG 3 cut(s) 91, 185, 451
BseGI GGATG 2 cut(s) 196, 487
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 60, 528
BseNI ACTGG 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 305
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 92, 316
BsnI GGCC 1 cut(s) 358
Bso31I GGTCTC 1 cut(s) 316
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 147
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 1 cut(s) 466
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 2 cut(s) 61, 527
BspEI TCCGGA 1 cut(s) 235
BspPI GGATC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 316
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 3 cut(s) 91, 185, 451
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 93, 452
Bst4CI ACNGT 4 cut(s) 11, 86, 415, 554
BstDEI CTNAG 3 cut(s) 69, 439, 514
BstF5I GGATG 2 cut(s) 196, 487
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 92, 316
BstMBI GATC 1 cut(s) 147
BstNI CCWGG 2 cut(s) 93, 452
BstSCI CCNGG 2 cut(s) 91, 450
BstSFI CTRYAG 1 cut(s) 82
BsuRI GGCC 1 cut(s) 358
BtsCI GGATG 2 cut(s) 196, 487
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 7 cut(s) 73, 305, 338, 358, 443, 463, 566
CviKI_1 RGCY 7 cut(s) 73, 305, 338, 358, 443, 463, 566
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 3 cut(s) 69, 439, 514
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 91, 450
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FokI GGATG 2 cut(s) 203, 474
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 236
HinfI GANTC 2 cut(s) 323, 530
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 538
Hpy188I TCNGA 3 cut(s) 114, 517, 535
Hpy188III TCNNGA 3 cut(s) 158, 206, 236
HpyAV CCTTC 4 cut(s) 29, 235, 457, 553
HpyCH4III ACNGT 4 cut(s) 11, 86, 415, 554
HpyCH4IV ACGT 2 cut(s) 47, 132
HpyCH4V TGCA 3 cut(s) 225, 381, 398
HpyF3I CTNAG 3 cut(s) 69, 439, 514
HpySE526I ACGT 2 cut(s) 47, 132
Kpn2I TCCGGA 1 cut(s) 235
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 468
LweI GCATC 1 cut(s) 368
MaeII ACGT 2 cut(s) 47, 132
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 358
MluCI AATT 4 cut(s) 21, 177, 226, 287
MluNI TGGCCA 1 cut(s) 358
MnlI CCTC 5 cut(s) 25, 120, 270, 482, 504
Mox20I TGGCCA 1 cut(s) 358
MroI TCCGGA 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 358
MseI TTAA 2 cut(s) 404, 498
Msp20I TGGCCA 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 2 cut(s) 93, 452
MvaI CCWGG 2 cut(s) 93, 452
NdeII GATC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 323, 530
PsiI TTATAA 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 91, 450
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 91, 450
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 404, 498
Sau3AI GATC 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 93, 452
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 4 cut(s) 21, 177, 226, 287
SsiI CCGC 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 91, 450
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 4 cut(s) 11, 86, 415, 554
TaiI ACGT 2 cut(s) 50, 135
TasI AATT 4 cut(s) 21, 177, 226, 287
TfiI GAWTC 2 cut(s) 323, 530
Tru1I TTAA 2 cut(s) 404, 498
Tru9I TTAA 2 cut(s) 404, 498
TseFI GTSAC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 444, 602
TspGWI ACGGA 1 cut(s) 213
XapI RAATTY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.