RchiOBHm_Chr7g0243151

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000630
Physical Location & Seq
Reverse (-)
69458301 .. 69459814
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21791

Sequence Viewer

Length: 444 bp
ATGGCTTTTCTTTTGACAGTGGGAATGTGTAAAGAAAGGACAAAATCAGAGTGGAAGAGTTTTCTTGTGACTATGATGGGAAGAAACCGATTGGTTTTGCTCACTGGATTAGCTGATGCATGGCCTGCAAGGCATACATGGACACTTGACCACTTATTGCAGAATTATGGAGATACAGCTTTCAAGATTTCTCAAAGGACCTCACGTAAAATCTCAATGACATTCAAGGATTATGTTTCATATATGAAAGTTCAGCATGATGAGGATCCGCTTTATATCTTTGATCACAAGTTTGGAGAGGTCGAACCTGGCTTGTTGAAAGATTACAGTGTACCTTATCTATTTCAAGAGGACTTTTTTGATGTTTTGGACAAAGATAAGCGACCTCCATTTAGATGGCTCATTATTGGTCCCCAGAGGTCTGGTGCTTCTTTTGCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

147

Amino Acids

17.24

Weight (kDa)

8.52

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 269
AclWI GGATC 2 cut(s) 260, 273
AfaI GTAC 1 cut(s) 333
AgsI TTSAA 4 cut(s) 184, 226, 319, 347
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 2 cut(s) 113, 179
AluI AGCT 2 cut(s) 113, 179
AlwI GGATC 2 cut(s) 260, 273
AoxI GGCC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 198, 410
AvaII GGWCC 2 cut(s) 198, 410
BamHI GGATCC 1 cut(s) 265
BccI CCATC 2 cut(s) 70, 390
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 283
BglI GCCNNNNNGGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 198, 410
BmgT120I GGNCC 2 cut(s) 198, 410
BmiI GGNNCC 2 cut(s) 267, 412
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 1 cut(s) 309
BseJI GATNNNNATC 1 cut(s) 264
BseNI ACTGG 1 cut(s) 109
BshFI GGCC 1 cut(s) 124
BslFI GGGAC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 1 cut(s) 124
Bsp143I GATC 2 cut(s) 265, 283
BspACI CCGC 1 cut(s) 269
BspANI GGCC 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 267, 412
BspPI GGATC 2 cut(s) 260, 273
BsrI ACTGG 1 cut(s) 109
BssMI GATC 2 cut(s) 265, 283
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 19, 329
Bst6I CTCTTC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 268, 286
BstMBI GATC 2 cut(s) 265, 283
BstMWI GCNNNNNNNGC 3 cut(s) 125, 130, 434
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 2 cut(s) 396, 422
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 1 cut(s) 124
BtsIMutI CAGTG 3 cut(s) 24, 102, 334
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 198, 410
Csp6I GTAC 1 cut(s) 332
CviAII CATG 4 cut(s) 120, 138, 257, 438
CviJI RGCY 6 cut(s) 5, 113, 124, 179, 312, 400
CviKI_1 RGCY 6 cut(s) 5, 113, 124, 179, 312, 400
CviQI GTAC 1 cut(s) 332
DpnI GATC 2 cut(s) 267, 285
DpnII GATC 2 cut(s) 265, 283
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 198, 410
EcoO109I RGGNCCY 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 121
FaeI CATG 4 cut(s) 123, 141, 260, 441
FaqI GGGAC 1 cut(s) 396
FatI CATG 4 cut(s) 119, 137, 256, 437
FbaI TGATCA 1 cut(s) 283
HaeIII GGCC 1 cut(s) 124
Hin1II CATG 4 cut(s) 123, 141, 260, 441
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 184, 347
Hpy8I GTNNAC 1 cut(s) 332
HpyCH4III ACNGT 2 cut(s) 19, 329
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 4 cut(s) 119, 128, 160, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 130, 434
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 4 cut(s) 123, 141, 260, 441
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 2 cut(s) 265, 283
LpnPI CCDG 6 cut(s) 90, 138, 294, 321, 408, 428
LweI GCATC 1 cut(s) 106
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 267, 285
MboI GATC 2 cut(s) 265, 283
MboII GAAGA 2 cut(s) 67, 93
MflI RGATCY 1 cut(s) 265
MluCI AATT 1 cut(s) 163
MnlI CCTC 6 cut(s) 211, 256, 292, 343, 396, 411
Mph1103I ATGCAT 1 cut(s) 121
MslI CAYNNNNRTG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 125, 130, 434
NdeII GATC 2 cut(s) 265, 283
NlaIII CATG 4 cut(s) 123, 141, 260, 441
NlaIV GGNNCC 2 cut(s) 267, 412
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 121
NspI RCATGY 1 cut(s) 441
Ppu21I YACGTR 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 267, 412
PspPI GGNCC 2 cut(s) 198, 410
PspPPI RGGWCCY 1 cut(s) 198
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 394
Sau3AI GATC 2 cut(s) 265, 283
Sau96I GGNCC 2 cut(s) 198, 410
ScrFI CCNGG 1 cut(s) 309
SetI ASST 9 cut(s) 115, 181, 203, 208, 303, 310, 337, 388, 422
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 2 cut(s) 198, 410
SmiMI CAYNNNNRTG 1 cut(s) 394
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 19, 329
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 163
TscAI CASTG 3 cut(s) 24, 109, 334
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 228, 260
TspRI CASTG 3 cut(s) 24, 109, 334
VpaK11BI GGWCC 2 cut(s) 198, 410
XceI RCATGY 1 cut(s) 441
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.