Rmu_sc0000679.1_g000021

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000679.1
OG0000630
Physical Location & Seq
Reverse (-)
80754 .. 81732
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000679.1_g000021.1.cds

Sequence Viewer

Length: 468 bp
atgtcactttatggattaggtgctgagcttgagttctacagtctcctaggcaaagtcaactcccctctgaaaaataacatgcctgacgttacggcaagtgggatcatttatcttgaaaatggaacttataaaattgtaccttgggattgcaaagagttcctgataagagatactgtgtcacaggaagatgaactgaacttagcttccttcctgggagagcagctccgtaacctccatctcttaccccatccacctcttaatatctcaactttctcagacattgaacaggaaatagattttcctttcaccaacggtagtatggaagctgttccccataaatcaaacattcctgctgaatgggatatattcattataactctatccaagaagaagaaggatgtctcaagtcgcttgattaaatggggagatccaattcctagcacactcatagagaaagctgacaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

155

Amino Acids

17.49

Weight (kDa)

4.92

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 129, 374
AclWI GGATC 2 cut(s) 110, 422
AfaI GTAC 1 cut(s) 138
AgsI TTSAA 2 cut(s) 116, 284
AjnI CCWGG 1 cut(s) 210
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 5 cut(s) 28, 203, 223, 326, 458
AluI AGCT 5 cut(s) 28, 203, 223, 326, 458
Alw26I GTCTC 2 cut(s) 47, 406
AlwI GGATC 2 cut(s) 110, 422
ApeKI GCWGC 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 327
AspA2I CCTAGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 298
AvrII CCTAGG 1 cut(s) 46
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 243, 255
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 47, 406
BfaI CTAG 2 cut(s) 47, 438
BfmI CTRYAG 1 cut(s) 37
BisI GCNGC 1 cut(s) 221
BlnI CCTAGG 1 cut(s) 46
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 207, 239
Bpu1102I GCTNAGC 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 50, 388
BsaJI CCNNGG 3 cut(s) 46, 140, 211
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 3 cut(s) 46, 140, 211
BseGI GGATG 2 cut(s) 247, 403
BseMII CTCAG 2 cut(s) 15, 288
BseXI GCAGC 1 cut(s) 232
BsmAI GTCTC 2 cut(s) 47, 406
Bsp143I GATC 2 cut(s) 102, 427
Bsp1720I GCTNAGC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 16, 287
BspPI GGATC 2 cut(s) 110, 422
BssECI CCNNGG 3 cut(s) 46, 140, 211
BssMI GATC 2 cut(s) 102, 427
BssT1I CCWWGG 2 cut(s) 46, 140
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 3 cut(s) 41, 175, 314
BstDEI CTNAG 3 cut(s) 24, 199, 274
BstF5I GGATG 2 cut(s) 247, 403
BstKTI GATC 2 cut(s) 105, 430
BstMAI GTCTC 2 cut(s) 47, 406
BstMBI GATC 2 cut(s) 102, 427
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BtsCI GGATG 2 cut(s) 247, 403
Csp6I GTAC 1 cut(s) 137
CviAII CATG 1 cut(s) 79
CviJI RGCY 5 cut(s) 28, 203, 223, 326, 458
CviKI_1 RGCY 5 cut(s) 28, 203, 223, 326, 458
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 3 cut(s) 24, 199, 274
DpnI GATC 2 cut(s) 104, 429
DpnII GATC 2 cut(s) 102, 427
Eco130I CCWWGG 2 cut(s) 46, 140
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 2 cut(s) 46, 140
ErhI CCWWGG 2 cut(s) 46, 140
FaeI CATG 1 cut(s) 82
FaiI YATR 8 cut(s) 12, 80, 129, 320, 336, 365, 374, 449
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 2 cut(s) 234, 410
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 2 cut(s) 47, 438
GluI GCNGC 1 cut(s) 221
Hin1II CATG 1 cut(s) 82
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 69, 277
Hpy188III TCNNGA 2 cut(s) 113, 160
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 217, 388
HpyCH4III ACNGT 3 cut(s) 41, 175, 314
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 150
HpyF3I CTNAG 3 cut(s) 24, 199, 274
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 2 cut(s) 102, 427
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 7 cut(s) 96, 167, 173, 197, 224, 272, 363
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 2 cut(s) 47, 438
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 4 cut(s) 3, 88, 177, 227
MalI GATC 2 cut(s) 104, 429
MboI GATC 2 cut(s) 102, 427
MboII GAAGA 3 cut(s) 197, 400, 403
MflI RGATCY 1 cut(s) 427
MluCI AATT 2 cut(s) 132, 432
MnlI CCTC 3 cut(s) 75, 242, 264
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 2 cut(s) 258, 417
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
NdeII GATC 2 cut(s) 102, 427
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 3, 177
NspI RCATGY 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 327
PkrI GCNGC 1 cut(s) 222
PsiI TTATAA 2 cut(s) 129, 374
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 258, 417
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 2 cut(s) 102, 427
ScrFI CCNGG 1 cut(s) 212
SfcI CTRYAG 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 29, 403
SmoI CTYRAG 2 cut(s) 29, 403
Sse9I AATT 2 cut(s) 132, 432
SspMI CTAG 2 cut(s) 47, 438
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 2 cut(s) 46, 140
TaaI ACNGT 3 cut(s) 41, 175, 314
TaiI ACGT 1 cut(s) 90
TasI AATT 2 cut(s) 132, 432
Tru1I TTAA 2 cut(s) 258, 417
Tru9I TTAA 2 cut(s) 258, 417
TseFI GTSAC 2 cut(s) 3, 177
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 2 cut(s) 3, 177
TspDTI ATGAA 2 cut(s) 204, 358
TspGWI ACGGA 1 cut(s) 215
XceI RCATGY 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmaJI CCTAGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 2 cut(s) 47, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.