Rmu_sc0001461.1_g000098

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001461.1
OG0000630
Physical Location & Seq
Reverse (-)
353182 .. 353759
578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001461.1_g000098.1.cds

Sequence Viewer

Length: 273 bp
atggccgaattcgaaaccgaaagtttagcctgctcttctccgatggaggtttccgaatccccttccttccggccaagagatcgtcgcccggacgccctcggaagcttcctagtcctccctgacgagctcatctgtgccgtcttggagttgctctctcctcgcgacgttgctcgcctctcatgtgttagcagggagaatgtgtcgtatgaacgcgacgaggcttgcagaaaaccaccgaattttgatggtaaggatgttatgccttttgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

90

Amino Acids

10.14

Weight (kDa)

4.57

Isoelectric Point (pI)

67.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 162, 213
AcoI YGGCCR 2 cut(s) 3, 71
AcsI RAATTY 2 cut(s) 8, 238
AcyI GRCGYC 1 cut(s) 93
AgsI TTSAA 1 cut(s) 269
AluBI AGCT 2 cut(s) 105, 127
AluI AGCT 2 cut(s) 105, 127
Alw21I GWGCWC 1 cut(s) 129
AoxI GGCC 2 cut(s) 3, 71
ApoI RAATTY 2 cut(s) 8, 238
AsuC2I CCSGG 1 cut(s) 89
AsuII TTCGAA 1 cut(s) 12
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 2 cut(s) 37, 239
BceAI ACGGC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 89
BfaI CTAG 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BplI GAGNNNNNCTC 2 cut(s) 137, 169
Bpu14I TTCGAA 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 147
Bsh1236I CGCG 2 cut(s) 162, 213
BshFI GGCC 2 cut(s) 5, 73
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 70, 89
BsnI GGCC 2 cut(s) 5, 73
Bsp119I TTCGAA 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 79
Bsp68I TCGCGA 1 cut(s) 162
BspANI GGCC 2 cut(s) 5, 73
BspFNI CGCG 2 cut(s) 162, 213
BspQI GCTCTTC 1 cut(s) 40
BspT104I TTCGAA 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 79
BssNI GRCGYC 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 12
BstC8I GCNNGC 3 cut(s) 31, 172, 223
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 2 cut(s) 162, 213
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 87
BstUI CGCG 2 cut(s) 162, 213
BsuRI GGCC 2 cut(s) 5, 73
BtsCI GGATG 1 cut(s) 259
BtuMI TCGCGA 1 cut(s) 162
Cac8I GCNNGC 3 cut(s) 31, 172, 223
CseI GACGC 1 cut(s) 101
CviAII CATG 1 cut(s) 180
CviJI RGCY 6 cut(s) 5, 29, 73, 105, 127, 221
CviKI_1 RGCY 6 cut(s) 5, 29, 73, 105, 127, 221
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 2 cut(s) 3, 71
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 1 cut(s) 183
FaiI YATR 3 cut(s) 181, 207, 260
FatI CATG 1 cut(s) 179
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 129
FspBI CTAG 1 cut(s) 110
HaeIII GGCC 2 cut(s) 5, 73
HapII CCGG 2 cut(s) 70, 89
HgaI GACGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 70, 89
Hpy188I TCNGA 3 cut(s) 42, 55, 101
Hpy188III TCNNGA 1 cut(s) 161
Hpy99I CGWCG 3 cut(s) 87, 167, 218
HpyAV CCTTC 2 cut(s) 72, 76
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 183
Kzo9I GATC 1 cut(s) 79
LguI GCTCTTC 1 cut(s) 40
LpnPI CCDG 5 cut(s) 43, 83, 102, 132, 175
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 165
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 8, 238
MnlI CCTC 6 cut(s) 40, 107, 125, 168, 185, 211
MspI CCGG 2 cut(s) 70, 89
MspR9I CCNGG 1 cut(s) 89
MvnI CGCG 2 cut(s) 162, 213
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 183
NruI TCGCGA 1 cut(s) 162
NspV TTCGAA 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 129
RruI TCGCGA 1 cut(s) 162
SacI GAGCTC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 129
SetI ASST 4 cut(s) 51, 107, 129, 168
SfuI TTCGAA 1 cut(s) 12
Sse9I AATT 2 cut(s) 8, 238
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 8, 238
TfiI GAWTC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 222
XapI RAATTY 2 cut(s) 8, 238
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.