Rh7BG444700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000630
Physical Location & Seq
Reverse (-)
51844829 .. 51852015
7187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG444700.1

Sequence Viewer

Length: 2973 bp
ATGGAGATTTCCGAAGCCCCTCCCTTCCGGCCAAGAGACCGCCGGCCGGACGCCCTCGGAAGCTTCCTAGTCCTCCCCGACGAGCTCATCTGTGCCGTCTTGAAATTGCTCTCTCCTCGCGACGTTGCTCGCCTCTCATGCGTTAGCAGTGTGATGTATATATTTTGCAATGAAGAGCCACTCTGGTTGAGTTTATGCCTCAACGCACTGAATGGTCCGCTCCAGTACAAAGGATCGTGGAAGAAGACTGTGCTGCATTTCGAGAATGTGTCGTATGAATGCGATGAGGCTTGCAGAAAACCATTGAGTTTTGATGGATTCGACTCTTTGTTCTTGTACAGAAGATTATACAGGTGTCATACCACATTGGATGGTTTTTCTTTTGACAATGGGAATGTGGAAAGAAAGGACAAGATCACATTGGAAGAGTTTTCTTGTGATTATGATGGGAAGAAACCGGTTTTGCTCACTGGATTAGCTGATGCATGGCCTGCAAGGCGTACATGGACACTTGACCACTTATTGCAGAATTATGGAGATACAGCTTTCAAGATTTCTCAAAGGAGCTCACGTAAAATCTCAATGACATTCAAAGATTATGTTTCATATATGAAGGTTCAGCATGATGAGGATCCGCTTTATATCTTTGATCACAAGTTTGGAGAGGTTGAACCTGGCTTGTTGAAAGATTACAGTGTACCTTATCTATTTCAAGAGGACTTTTTTGATGTTTTGGACAAAGATAAGCGACCTCCATTTAGATGGCTCATTATTGGTCCCCAGAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTGACCAGTGCCTGGAATACACTTCTATGTGGTCGTAAAAGGTGGGCCTTGTATCCTCCAGGAAGAGTACCTATAGGTGTCACAGTACATGTAAACGAAGAAGACGGTGATGTCAATATTGAAACTCCAACTTCGTTGCAGTGGTGGCTAGATTTTTATCCACTTCTTGCTGATGAAGACAAGCCCATAGAGTGCACCCAAATGCCGGGGGAGACGATTTTCGTTCCTAGTGGATGGTGGCACTGTGTCCTAAATCTTGAACCATCTATTGCTGTTACCCAGAACTTTGTAAATTCTAAGAACTTTGAATTTGTGTGCTTGGATATGGCACCTGGTTATCGTCATAAGGGAGTTTGCCGTGCTGGATTACTTGCAGATGATGAAGGCGGTATTGAGGATTCCACAAATCATATTCTCTATGATAAAGATGATTATAATTCCTCAGATATGACTAGGAAAGTAAAAAGAGTCAGAACTCTCAATCCTGGAGAATATCCTAGTAGTGCAAGAACTAGTATTGGTGCTCAGGGTTTTTCTTATGATGTAAATTTCTTAGCCATGTATCTGGATGAAGAGAGAGATCATTACAACTCTCCTTGGAGCTCAGGCAATTGCATAGGGCAACGAGAAATGAGAGAATGGTTATTCAAGCTTTGGGTTGGAAAACCAGGAATGAGAGACTTGATCTGGAAGGGAGCATGTCTTGCACTAAATGCTAGCAAATGGTCAGAATCCCTGGCAGAAATTTGTGCCTTCCACAAATTGCCTTGTCCAACAGATGATGAGAGGCTTCCAGTTGGCACGGGTAGCAATCCTGTTTATCTCATGAGCAACTGCGTAATCAAAATTTTTGTTGAGGAAGGACTGGAAACGTCACTTTATGGATTAGGTGCTGAGCTTGAGTTCTACAGTCTTCTAGGCAAAGTCAACTCCCCTCTGAAAAATCACGTACCTGACGTTTTGGCAAGTGGGATCATTTATCTTGAAAATGGAACGTATAAAATTGTACCTTGGGATGGCATCAGAGTTCCTGATGTGATTGCTAACTGCAATTTTATTCCGGAGAAGGTCGAAGGAGATGTTTCTCCTTTTGGTGTATGGAGGAAGAAACAATTTGAATACAGAAAAGCTGGGGTCTCAACAAACGAATCCATCAGTTCAGCTGAATATACAAGGATATGGCCATATCTCATAACAAAACGATGCAAAGGAAAAATATATGCAGAGTTAAGAGATACTGTGTCACGGGAAGATGAACTGAACTTAGCTTCCTTCCTGGGAGAGCAGCTCCGTAACCTCCATCTCTTGGCCCATCCACCTCTTAATATCTCAACTGTCTCAGATATTGAACAGGGGTCAGATTTTCCATTCACCAACGGTAGTATGGAAGCTGTTCCCCATAAATCAAACATTCCTGCTGAATGGGATATATTCATTAGAACTCTATTCAAGAAGAAGAAGGATGTCTCAAGTCGCTTGATTAAATGGGGAGATCCAATTCCTAGCACACTCATAGAGAAAGTTGACAAGTACGTCCCAGATGATTTTGCCAAGTTTCTGTACATGTTCAAGGATGAAAATGGTGTGAGCAAAGTTGGTAAAAGTTGTTCGTGGATACACTCTGATATCATGGATGACAACATTCACATGGAACTATGTGGTTTTAATTCTTGCTTCATTGGCAACGCCAAAGACACTTGCCTGGTAAATAATGGTTCCTTGAATGTTGATGGTGACCGTGCAGAGAGGAAAACATGGTGCCCTAGCCACATTCTTGATTTCAGTAATCTTTCTATAGGTGATCCCATCTATGATTTGATACCCTTATACTTGGATATATTCAGAGGTGATTGCTACCTCCTTAAGCAATTTCTAGATAGTTATAAACTTCCTTTAGTAAGACAAGCATCACCTCATGAGTATATGGAGGGTGGCGACAAGTTTGGACGACTTTCCTACCATGCCATGTGCTACTGTATTCTACACGAAGAGAATGTTCTGGGAGCAATTTTTAGTATCTGGGACGAACTCAAGATGGCAAAATCATGGGAAGAAGTTGAACAGGTTGTATGGGGCGAGCTAAATAACTACAAAGGCTTTCCTGGATCATCCACATCTCTCTCTTCCTTGGAGCCGAAAACTCCCTCAACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

990

Amino Acids

112.87

Weight (kDa)

5.3

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 23 - 67 3.1e-07 F-box-like
Cupin_8 PF13621 149 - 371 2.4e-19 Cupin-like domain
JmjC PF02373 255 - 368 1.5e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1251, 2700
AasI GACNNNNNNGTC 2 cut(s) 926, 2348
AccB1I GGYRCC 2 cut(s) 1144, 2574
AccB7I CCANNNNNTGG 2 cut(s) 828, 2122
AccBSI CCGCTC 1 cut(s) 220
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 1876
AciI CCGC 4 cut(s) 40, 218, 635, 1203
AclWI GGATC 8 cut(s) 241, 626, 639, 803, 1796, 2303, 2612, 2929
AcoI YGGCCR 3 cut(s) 29, 44, 1997
AcsI RAATTY 5 cut(s) 1108, 1124, 1363, 1560, 1662
AcyI GRCGYC 1 cut(s) 51
AfiI CCNNNNNNNGG 5 cut(s) 46, 828, 1021, 1832, 2122
AflII CTTAAG 1 cut(s) 2678
AflIII ACRYGT 2 cut(s) 904, 2379
AgeI ACCGGT 1 cut(s) 457
AhlI ACTAGT 1 cut(s) 1328
AloI GAACNNNNNNTCC 4 cut(s) 1282, 1314, 2069, 2101
Alw21I GWGCWC 5 cut(s) 87, 569, 1013, 1342, 1421
Alw26I GTCTC 6 cut(s) 30, 1022, 1488, 1957, 2158, 2287
Alw44I GTGCAC 1 cut(s) 1009
AlwI GGATC 8 cut(s) 241, 626, 639, 803, 1796, 2303, 2612, 2929
AlwNI CAGNNNCTG 1 cut(s) 828
Aor13HI TCCGGA 1 cut(s) 1876
AoxI GGCC 6 cut(s) 29, 44, 488, 861, 1997, 2124
ApaLI GTGCAC 1 cut(s) 1009
ApeKI GCWGC 2 cut(s) 253, 2101
ApoI RAATTY 5 cut(s) 1108, 1124, 1363, 1560, 1662
AsiGI ACCGGT 1 cut(s) 457
Asp700I GAANNNNTTC 1 cut(s) 2208
AspS9I GGNCC 4 cut(s) 215, 776, 861, 2125
AsuC2I CCSGG 1 cut(s) 1023
AsuHPI GGTGA 6 cut(s) 935, 2179, 2561, 2627, 2675, 2718
AsuNHI GCTAGC 1 cut(s) 1532
AvaII GGWCC 2 cut(s) 215, 776
BaeGI GKGCMC 2 cut(s) 1013, 2579
BalI TGGCCA 1 cut(s) 1999
BamHI GGATCC 1 cut(s) 631
BanI GGYRCC 2 cut(s) 1144, 2574
BanII GRGCYC 3 cut(s) 87, 569, 1421
BbsI GAAGAC 4 cut(s) 251, 924, 999, 1721
Bbv12I GWGCWC 5 cut(s) 87, 569, 1013, 1342, 1421
BbvI GCAGC 2 cut(s) 240, 2113
BceAI ACGGC 2 cut(s) 80, 1158
BciVI GTATCC 2 cut(s) 879, 2424
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 1 cut(s) 1023
BcoDI GTCTC 6 cut(s) 30, 1022, 1488, 1957, 2158, 2287
BcuI ACTAGT 1 cut(s) 1328
BfmI CTRYAG 3 cut(s) 888, 1723, 2610
BfrI CTTAAG 1 cut(s) 2678
BfuI GTATCC 2 cut(s) 879, 2424
BglI GCCNNNNNGGC 1 cut(s) 496
BisI GCNGC 2 cut(s) 254, 2102
BlpI GCTNAGC 1 cut(s) 1710
BlsI GCNGC 2 cut(s) 255, 2103
Bme18I GGWCC 2 cut(s) 215, 776
BmgT120I GGNCC 4 cut(s) 215, 776, 861, 2125
BmiI GGNNCC 6 cut(s) 633, 778, 1146, 2533, 2576, 2949
BmsI GCATC 4 cut(s) 472, 1845, 2009, 2732
BmtI GCTAGC 1 cut(s) 1536
BpiI GAAGAC 4 cut(s) 251, 924, 999, 1721
BplI GAGNNNNNCTC 2 cut(s) 2088, 2120
BpmI CTGGAG 3 cut(s) 206, 858, 1323
Bpu10I CCTNAGC 2 cut(s) 1341, 1420
Bpu1102I GCTNAGC 1 cut(s) 1710
BpuEI CTTGAG 3 cut(s) 1736, 2269, 2831
BpuMI CCSGG 1 cut(s) 1023
BsaAI YACGTR 2 cut(s) 572, 1765
BsaBI GATNNNNATC 2 cut(s) 630, 972
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 2 cut(s) 30, 1957
BsaJI CCNNGG 7 cut(s) 55, 1022, 1412, 1551, 1826, 2092, 2943
BsaWI WCCGGW 2 cut(s) 457, 1876
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 828, 1021, 1832, 2122
Bse118I RCCGGY 2 cut(s) 42, 457
Bse1I ACTGG 5 cut(s) 223, 475, 822, 1610, 1686
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 2 cut(s) 630, 972
BseAI TCCGGA 1 cut(s) 1876
BseDI CCNNGG 7 cut(s) 55, 1022, 1412, 1551, 1826, 2092, 2943
BseGI GGATG 9 cut(s) 376, 1055, 1390, 1837, 2128, 2284, 2395, 2455, 2924
BseJI GATNNNNATC 2 cut(s) 630, 972
BseLI CCNNNNNNNGG 5 cut(s) 46, 828, 1021, 1832, 2122
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 5 cut(s) 1272, 1355, 1434, 1701, 2169
BseNI ACTGG 5 cut(s) 223, 475, 822, 1610, 1686
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 2 cut(s) 1013, 2579
BseX3I CGGCCG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 240, 2113
BseYI CCCAGC 1 cut(s) 1946
BsgI GTGCAG 1 cut(s) 2577
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 6 cut(s) 31, 46, 490, 863, 1999, 2126
BshNI GGYRCC 2 cut(s) 1144, 2574
BshTI ACCGGT 1 cut(s) 457
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 5 cut(s) 87, 569, 1013, 1342, 1421
BsiSI CCGG 6 cut(s) 28, 43, 47, 458, 1022, 1877
BslFI GGGAC 3 cut(s) 762, 2336, 2852
BslI CCNNNNNNNGG 5 cut(s) 46, 828, 1021, 1832, 2122
BsmAI GTCTC 6 cut(s) 30, 1022, 1488, 1957, 2158, 2287
BsmBI CGTCTC 1 cut(s) 1022
BsmFI GGGAC 3 cut(s) 762, 2336, 2852
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 6 cut(s) 31, 46, 490, 863, 1999, 2126
Bso31I GGTCTC 2 cut(s) 30, 1957
Bsp1286I GDGCHC 6 cut(s) 87, 569, 1013, 1342, 1421, 2579
Bsp13I TCCGGA 1 cut(s) 1876
Bsp1407I TGTACA 2 cut(s) 336, 2376
Bsp1720I GCTNAGC 1 cut(s) 1710
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 4 cut(s) 40, 218, 635, 1203
BspANI GGCC 6 cut(s) 31, 46, 490, 863, 1999, 2126
BspCNI CTCAG 5 cut(s) 1271, 1354, 1433, 1702, 2168
BspEI TCCGGA 1 cut(s) 1876
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 2 cut(s) 1641, 2731
BspLI GGNNCC 6 cut(s) 633, 778, 1146, 2533, 2576, 2949
BspOI GCTAGC 1 cut(s) 1536
BspPI GGATC 8 cut(s) 241, 626, 639, 803, 1796, 2303, 2612, 2929
BspQI GCTCTTC 1 cut(s) 168
BspT107I GGYRCC 2 cut(s) 1144, 2574
BspTI CTTAAG 1 cut(s) 2678
BspTNI GGTCTC 2 cut(s) 30, 1957
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 2 cut(s) 42, 457
BsrGI TGTACA 2 cut(s) 336, 2376
BsrI ACTGG 5 cut(s) 223, 475, 822, 1610, 1686
BssAI RCCGGY 2 cut(s) 42, 457
BssECI CCNNGG 7 cut(s) 55, 1022, 1412, 1551, 1826, 2092, 2943
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 3 cut(s) 1412, 1826, 2943
Bst6I CTCTTC 6 cut(s) 168, 420, 874, 1383, 2799, 2944
BstACI GRCGYC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 2678
BstAPI GCANNNNNTGC 3 cut(s) 491, 1520, 1529
BstAUI TGTACA 2 cut(s) 336, 2376
BstBAI YACGTR 2 cut(s) 572, 1765
BstC8I GCNNGC 6 cut(s) 44, 130, 292, 492, 1534, 2894
BstDEI CTNAG 8 cut(s) 1113, 1258, 1341, 1369, 1420, 1710, 2080, 2155
BstEII GGTNACC 1 cut(s) 2549
BstF5I GGATG 9 cut(s) 376, 1055, 1390, 1837, 2128, 2284, 2395, 2455, 2924
BstFNI CGCG 1 cut(s) 120
BstMAI GTCTC 6 cut(s) 30, 1022, 1488, 1957, 2158, 2287
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 8 cut(s) 138, 491, 496, 961, 1520, 1529, 1623, 2496
BstNSI RCATGY 4 cut(s) 806, 908, 1518, 2383
BstPI GGTNACC 1 cut(s) 2549
BstSFI CTRYAG 3 cut(s) 888, 1723, 2610
BstSLI GKGCMC 2 cut(s) 1013, 2579
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 240, 2113
BstV2I GAAGAC 4 cut(s) 251, 924, 999, 1721
BstX2I RGATCY 2 cut(s) 631, 2308
BstXI CCANNNNNNTGG 3 cut(s) 762, 788, 1381
BstYI RGATCY 2 cut(s) 631, 2308
BstZI CGGCCG 1 cut(s) 44
BsuI GTATCC 2 cut(s) 879, 2424
BsuRI GGCC 6 cut(s) 31, 46, 490, 863, 1999, 2126
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 9 cut(s) 376, 1055, 1390, 1837, 2128, 2284, 2395, 2455, 2924
BtsI GCAGTG 2 cut(s) 154, 962
BtsIMutI CAGTG 7 cut(s) 154, 206, 468, 700, 829, 962, 1057
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 6 cut(s) 44, 130, 292, 492, 1534, 2894
CaiI CAGNNNCTG 1 cut(s) 828
CciI TCATGA 2 cut(s) 1641, 2731
Cfr10I RCCGGY 2 cut(s) 42, 457
Cfr13I GGNCC 4 cut(s) 215, 776, 861, 2125
CseI GACGC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 1147
CspAI ACCGGT 1 cut(s) 457
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
DdeI CTNAG 8 cut(s) 1113, 1258, 1341, 1369, 1420, 1710, 2080, 2155
DrdI GACNNNNNNGTC 2 cut(s) 926, 2348
DseDI GACNNNNNNGTC 2 cut(s) 926, 2348
EaeI YGGCCR 3 cut(s) 29, 44, 1997
EagI CGGCCG 1 cut(s) 44
Eam1104I CTCTTC 6 cut(s) 168, 420, 874, 1383, 2799, 2944
EarI CTCTTC 6 cut(s) 168, 420, 874, 1383, 2799, 2944
Ecl136II GAGCTC 3 cut(s) 85, 567, 1419
EclXI CGGCCG 1 cut(s) 44
Eco130I CCWWGG 3 cut(s) 1412, 1826, 2943
Eco24I GRGCYC 3 cut(s) 87, 569, 1421
Eco31I GGTCTC 2 cut(s) 30, 1957
Eco32I GATATC 1 cut(s) 2443
Eco47I GGWCC 2 cut(s) 215, 776
Eco52I CGGCCG 1 cut(s) 44
Eco53kI GAGCTC 3 cut(s) 85, 567, 1419
Eco91I GGTNACC 1 cut(s) 2549
EcoICRI GAGCTC 3 cut(s) 85, 567, 1419
EcoO65I GGTNACC 1 cut(s) 2549
EcoRV GATATC 1 cut(s) 2443
EcoT14I CCWWGG 3 cut(s) 1412, 1826, 2943
EcoT22I ATGCAT 1 cut(s) 487
EcoT38I GRGCYC 3 cut(s) 87, 569, 1421
ErhI CCWWGG 3 cut(s) 1412, 1826, 2943
Esp3I CGTCTC 1 cut(s) 1022
FaqI GGGAC 3 cut(s) 762, 2336, 2852
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 2 cut(s) 254, 2102
FokI GGATG 9 cut(s) 383, 1062, 1397, 1844, 2115, 2291, 2402, 2462, 2911
FriOI GRGCYC 3 cut(s) 87, 569, 1421
Fsp4HI GCNGC 2 cut(s) 254, 2102
GluI GCNGC 2 cut(s) 254, 2102
GsaI CCCAGC 1 cut(s) 1950
GsuI CTGGAG 3 cut(s) 206, 858, 1323
HaeIII GGCC 6 cut(s) 31, 46, 490, 863, 1999, 2126
HapII CCGG 6 cut(s) 28, 43, 47, 458, 1022, 1877
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
HincII GTYRAC 2 cut(s) 1744, 2341
HindII GTYRAC 2 cut(s) 1744, 2341
HindIII AAGCTT 2 cut(s) 61, 1466
HinfI GANTC 6 cut(s) 318, 323, 1214, 1284, 1547, 1964
HpaII CCGG 6 cut(s) 28, 43, 47, 458, 1022, 1877
HphI GGTGA 6 cut(s) 935, 2179, 2561, 2627, 2675, 2718
Hpy166II GTNNAC 5 cut(s) 698, 910, 1011, 1744, 2341
Hpy8I GTNNAC 5 cut(s) 698, 910, 1011, 1744, 2341
Hpy99I CGWCG 2 cut(s) 83, 125
HpyCH4IV ACGT 7 cut(s) 123, 571, 1688, 1764, 1773, 1811, 2349
HpyF10VI GCNNNNNNNGC 8 cut(s) 138, 491, 496, 961, 1520, 1529, 1623, 2496
HpyF3I CTNAG 8 cut(s) 1113, 1258, 1341, 1369, 1420, 1710, 2080, 2155
HpySE526I ACGT 7 cut(s) 123, 571, 1688, 1764, 1773, 1811, 2349
Hsp92I GRCGYC 1 cut(s) 51
Kpn2I TCCGGA 1 cut(s) 1876
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 649
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 7 cut(s) 225, 564, 1416, 1511, 2109, 2819, 2947
Lsp1109I GCAGC 2 cut(s) 240, 2113
LweI GCATC 4 cut(s) 472, 1845, 2009, 2732
MabI ACCWGGT 1 cut(s) 1147
MaeII ACGT 7 cut(s) 123, 571, 1688, 1764, 1773, 1811, 2349
MaeIII GTNAC 6 cut(s) 895, 1090, 1689, 2058, 2108, 2549
MbiI CCGCTC 1 cut(s) 220
MfeI CAATTG 1 cut(s) 1426
MflI RGATCY 2 cut(s) 631, 2308
MhlI GDGCHC 6 cut(s) 87, 569, 1013, 1342, 1421, 2579
MlsI TGGCCA 1 cut(s) 1999
MluNI TGGCCA 1 cut(s) 1999
MlyI GAGTC 2 cut(s) 317, 1293
MmeI TCCRAC 3 cut(s) 968, 1456, 1613
Mox20I TGGCCA 1 cut(s) 1999
Mph1103I ATGCAT 1 cut(s) 487
MroI TCCGGA 1 cut(s) 1876
MroNI GCCGGC 1 cut(s) 42
MroXI GAANNNNTTC 1 cut(s) 2208
MscI TGGCCA 1 cut(s) 1999
MseI TTAA 5 cut(s) 2045, 2139, 2298, 2481, 2679
MslI CAYNNNNRTG 4 cut(s) 760, 841, 1016, 2462
Msp20I TGGCCA 1 cut(s) 1999
MspA1I CMGCKG 1 cut(s) 1979
MspCI CTTAAG 1 cut(s) 2678
MspI CCGG 6 cut(s) 28, 43, 47, 458, 1022, 1877
MunI CAATTG 1 cut(s) 1426
Mva1269I GAATGC 1 cut(s) 284
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 8 cut(s) 138, 491, 496, 961, 1520, 1529, 1623, 2496
NaeI GCCGGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 1023
NgoMIV GCCGGC 1 cut(s) 42
NheI GCTAGC 1 cut(s) 1532
NlaIV GGNNCC 6 cut(s) 633, 778, 1146, 2533, 2576, 2949
NmuCI GTSAC 4 cut(s) 895, 1689, 2058, 2549
NruI TCGCGA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 4 cut(s) 806, 908, 1518, 2383
PagI TCATGA 2 cut(s) 1641, 2731
PciI ACATGT 2 cut(s) 904, 2379
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 1770
PctI GAATGC 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 2208
PfeI GAWTC 4 cut(s) 318, 1214, 1547, 1964
PflMI CCANNNNNTGG 2 cut(s) 828, 2122
PfoI TCCNGGA 3 cut(s) 874, 1300, 2917
PinAI ACCGGT 1 cut(s) 457
PkrI GCNGC 2 cut(s) 255, 2103
PleI GAGTC 2 cut(s) 317, 1292
PpsI GAGTC 2 cut(s) 317, 1292
Ppu21I YACGTR 2 cut(s) 572, 1765
PscI ACATGT 2 cut(s) 904, 2379
PsiI TTATAA 2 cut(s) 1251, 2700
Psp124BI GAGCTC 3 cut(s) 87, 569, 1421
PspEI GGTNACC 1 cut(s) 2549
PspFI CCCAGC 1 cut(s) 1946
PspN4I GGNNCC 6 cut(s) 633, 778, 1146, 2533, 2576, 2949
PspPI GGNCC 4 cut(s) 215, 776, 861, 2125
PsrI GAACNNNNNNTAC 2 cut(s) 2407, 2439
PstNI CAGNNNCTG 1 cut(s) 828
PsuI RGATCY 2 cut(s) 631, 2308
PvuII CAGCTG 1 cut(s) 1979
RruI TCGCGA 1 cut(s) 120
RseI CAYNNNNRTG 4 cut(s) 760, 841, 1016, 2462
SacI GAGCTC 3 cut(s) 87, 569, 1421
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 5 cut(s) 2045, 2139, 2298, 2481, 2679
SatI GCNGC 2 cut(s) 254, 2102
Sau96I GGNCC 4 cut(s) 215, 776, 861, 2125
SchI GAGTC 2 cut(s) 317, 1293
SduI GDGCHC 6 cut(s) 87, 569, 1013, 1342, 1421, 2579
SexAI ACCWGGT 1 cut(s) 1147
SfaNI GCATC 4 cut(s) 472, 1845, 2009, 2732
SfcI CTRYAG 3 cut(s) 888, 1723, 2610
SinI GGWCC 2 cut(s) 215, 776
SmiMI CAYNNNNRTG 4 cut(s) 760, 841, 1016, 2462
SmlI CTYRAG 4 cut(s) 1715, 2284, 2678, 2846
SmoI CTYRAG 4 cut(s) 1715, 2284, 2678, 2846
SpeI ACTAGT 1 cut(s) 1328
SsiI CCGC 4 cut(s) 40, 218, 635, 1203
SspI AATATT 1 cut(s) 934
SstI GAGCTC 3 cut(s) 87, 569, 1421
StyI CCWWGG 3 cut(s) 1412, 1826, 2943
TaiI ACGT 7 cut(s) 126, 574, 1691, 1767, 1776, 1814, 2352
TaqI TCGA 3 cut(s) 261, 321, 1887
TatI WGTACW 4 cut(s) 225, 336, 901, 2376
TfiI GAWTC 4 cut(s) 318, 1214, 1547, 1964
Tru1I TTAA 5 cut(s) 2045, 2139, 2298, 2481, 2679
Tru9I TTAA 5 cut(s) 2045, 2139, 2298, 2481, 2679
TscAI CASTG 7 cut(s) 154, 213, 475, 700, 829, 962, 1064
TseFI GTSAC 4 cut(s) 895, 1689, 2058, 2549
TseI GCWGC 2 cut(s) 253, 2101
Tsp45I GTSAC 4 cut(s) 895, 1689, 2058, 2549
TspGWI ACGGA 1 cut(s) 2096
TspRI CASTG 7 cut(s) 154, 213, 475, 700, 829, 962, 1064
Van91I CCANNNNNTGG 2 cut(s) 828, 2122
Vha464I CTTAAG 1 cut(s) 2678
VneI GTGCAC 1 cut(s) 1009
VpaK11BI GGWCC 2 cut(s) 215, 776
XapI RAATTY 5 cut(s) 1108, 1124, 1363, 1560, 1662
XbaI TCTAGA 1 cut(s) 2689
XceI RCATGY 4 cut(s) 806, 908, 1518, 2383
XcmI CCANNNNNNNNNTGG 1 cut(s) 2197
XmnI GAANNNNTTC 1 cut(s) 2208
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.