Rmu_sc0001461.1_g000057

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001461.1
OG0000630
Physical Location & Seq
Reverse (-)
209541 .. 211246
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001461.1_g000057.1.cds

Sequence Viewer

Length: 687 bp
atggaggtttccgaagccccttccttccggccaagagatcgccggcccggtgagctcatctgtgccgtcttggagttgctctctcctcgcgacgttagcagaaaactcgatgaggctggcagaaaaccactgagttttgatggattcgactctttgttcttgtacagaagattatacaggtgtcataccacattggatggtttttcttttgacaatgggaatgtggaaagaaaggacaagatcacattggaagagttttgttgtgactatgatgggaagaaaccggttttgctcactggattagctgatgcatggcctgcaaggcgtacatggacacttgaccacttattgcagaactatggagatacagctttcaagatttctcaaaggagctcacgtaaaatctcaatgacattcaaggattatgtttcatatatgaaagttcagcatgatgaggatccgctttatatctttgatcacaagtttggagaggttgaacctggcttgttgaaagattacagtgtaccttatctatttcaagaggacttttttgatgttttggacaaagataagcgacctccatttagatggctcattattggtccccagagttctggtgcttcttggcattttgatccagctctgaccagtgcctggaatactcttctatgtggtcgtaaaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

228

Amino Acids

26.58

Weight (kDa)

6.53

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 654
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 461
AclWI GGATC 3 cut(s) 452, 465, 629
AcoI YGGCCR 1 cut(s) 29
AfaI GTAC 3 cut(s) 164, 328, 525
AfiI CCNNNNNNNGG 1 cut(s) 654
AgeI ACCGGT 1 cut(s) 283
AgsI TTSAA 5 cut(s) 376, 418, 497, 511, 539
AjnI CCWGG 2 cut(s) 499, 653
AluBI AGCT 5 cut(s) 55, 305, 371, 393, 641
AluI AGCT 5 cut(s) 55, 305, 371, 393, 641
Alw21I GWGCWC 2 cut(s) 57, 395
AlwI GGATC 3 cut(s) 452, 465, 629
AlwNI CAGNNNCTG 1 cut(s) 654
AoxI GGCC 3 cut(s) 29, 44, 314
AsiGI ACCGGT 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 45, 602
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 602
BamHI GGATCC 1 cut(s) 457
BanII GRGCYC 2 cut(s) 57, 395
Bbv12I GWGCWC 2 cut(s) 57, 395
BccI CCATC 4 cut(s) 134, 191, 266, 582
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 2 cut(s) 501, 655
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 48
BglI GCCNNNNNGGC 1 cut(s) 322
Bme1390I CCNGG 3 cut(s) 48, 501, 655
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 2 cut(s) 45, 602
BmiI GGNNCC 2 cut(s) 459, 604
BmrFI CCNGG 3 cut(s) 48, 501, 655
BmsI GCATC 1 cut(s) 298
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpuMI CCSGG 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse118I RCCGGY 2 cut(s) 42, 283
Bse1I ACTGG 2 cut(s) 301, 648
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 2 cut(s) 501, 655
BseGI GGATG 1 cut(s) 202
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 301, 648
BseRI GAGGAG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 31, 46, 316
BshTI ACCGGT 1 cut(s) 283
BsiHKAI GWGCWC 2 cut(s) 57, 395
BsiSI CCGG 4 cut(s) 28, 43, 48, 284
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 1 cut(s) 654
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 3 cut(s) 31, 46, 316
Bsp1286I GDGCHC 2 cut(s) 57, 395
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 5 cut(s) 37, 240, 457, 475, 634
Bsp68I TCGCGA 1 cut(s) 90
BspACI CCGC 1 cut(s) 461
BspANI GGCC 3 cut(s) 31, 46, 316
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 459, 604
BspPI GGATC 3 cut(s) 452, 465, 629
BsrFI RCCGGY 2 cut(s) 42, 283
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 2 cut(s) 301, 648
BssAI RCCGGY 2 cut(s) 42, 283
BssMI GATC 5 cut(s) 37, 240, 457, 475, 634
Bst2UI CCWGG 2 cut(s) 501, 655
Bst4CI ACNGT 1 cut(s) 521
Bst6I CTCTTC 2 cut(s) 246, 669
BstAPI GCANNNNNTGC 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 3 cut(s) 44, 118, 318
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 5 cut(s) 40, 243, 460, 478, 637
BstMBI GATC 5 cut(s) 37, 240, 457, 475, 634
BstMWI GCNNNNNNNGC 4 cut(s) 52, 96, 317, 322
BstNI CCWGG 2 cut(s) 501, 655
BstSCI CCNGG 3 cut(s) 46, 499, 653
BstUI CGCG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 457
BstXI CCANNNNNNTGG 2 cut(s) 588, 614
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 3 cut(s) 31, 46, 316
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 4 cut(s) 128, 294, 526, 655
BtuMI TCGCGA 1 cut(s) 90
Cac8I GCNNGC 3 cut(s) 44, 118, 318
CaiI CAGNNNCTG 1 cut(s) 654
Cfr10I RCCGGY 2 cut(s) 42, 283
Cfr13I GGNCC 2 cut(s) 45, 602
Csp6I GTAC 3 cut(s) 163, 327, 524
CspAI ACCGGT 1 cut(s) 283
CviAII CATG 3 cut(s) 312, 330, 449
CviQI GTAC 3 cut(s) 163, 327, 524
DdeI CTNAG 1 cut(s) 131
DpnI GATC 5 cut(s) 39, 242, 459, 477, 636
DpnII GATC 5 cut(s) 37, 240, 457, 475, 634
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 246, 669
EarI CTCTTC 2 cut(s) 246, 669
Ecl136II GAGCTC 2 cut(s) 55, 393
Eco24I GRGCYC 2 cut(s) 57, 395
Eco47I GGWCC 1 cut(s) 602
Eco53kI GAGCTC 2 cut(s) 55, 393
EcoICRI GAGCTC 2 cut(s) 55, 393
EcoRII CCWGG 2 cut(s) 499, 653
EcoT22I ATGCAT 1 cut(s) 313
EcoT38I GRGCYC 2 cut(s) 57, 395
FaeI CATG 3 cut(s) 315, 333, 452
FaqI GGGAC 1 cut(s) 588
FatI CATG 3 cut(s) 311, 329, 448
FbaI TGATCA 1 cut(s) 475
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 2 cut(s) 57, 395
HaeIII GGCC 3 cut(s) 31, 46, 316
HapII CCGG 4 cut(s) 28, 43, 48, 284
Hin1II CATG 3 cut(s) 315, 333, 452
HinfI GANTC 2 cut(s) 144, 149
HpaII CCGG 4 cut(s) 28, 43, 48, 284
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 13, 645
Hpy188III TCNNGA 3 cut(s) 89, 376, 539
Hpy8I GTNNAC 1 cut(s) 524
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 30, 34
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4IV ACGT 2 cut(s) 93, 397
HpyCH4V TGCA 3 cut(s) 311, 320, 352
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 96, 317, 322
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 2 cut(s) 93, 397
Hsp92II CATG 3 cut(s) 315, 333, 452
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 5 cut(s) 37, 240, 457, 475, 634
LmnI GCTCC 1 cut(s) 390
LweI GCATC 1 cut(s) 298
MaeII ACGT 2 cut(s) 93, 397
MaeIII GTNAC 1 cut(s) 263
MalI GATC 5 cut(s) 39, 242, 459, 477, 636
MboI GATC 5 cut(s) 37, 240, 457, 475, 634
MboII GAAGA 4 cut(s) 180, 263, 289, 656
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 2 cut(s) 57, 395
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 6 cut(s) 96, 106, 448, 484, 535, 588
Mph1103I ATGCAT 1 cut(s) 313
MroNI GCCGGC 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 586
MspI CCGG 4 cut(s) 28, 43, 48, 284
MspR9I CCNGG 3 cut(s) 48, 501, 655
MvaI CCWGG 2 cut(s) 501, 655
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 4 cut(s) 52, 96, 317, 322
NaeI GCCGGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 48
NdeII GATC 5 cut(s) 37, 240, 457, 475, 634
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 3 cut(s) 315, 333, 452
NlaIV GGNNCC 2 cut(s) 459, 604
NmuCI GTSAC 1 cut(s) 263
NruI TCGCGA 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 313
PdiI GCCGGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 144
PflMI CCANNNNNTGG 1 cut(s) 654
PinAI ACCGGT 1 cut(s) 283
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 398
Psp124BI GAGCTC 2 cut(s) 57, 395
Psp6I CCWGG 2 cut(s) 499, 653
PspGI CCWGG 2 cut(s) 499, 653
PspN4I GGNNCC 2 cut(s) 459, 604
PspPI GGNCC 2 cut(s) 45, 602
PstNI CAGNNNCTG 1 cut(s) 654
PsuI RGATCY 1 cut(s) 457
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 3 cut(s) 164, 328, 525
RsaNI GTAC 3 cut(s) 163, 327, 524
RseI CAYNNNNRTG 1 cut(s) 586
SacI GAGCTC 2 cut(s) 57, 395
Sau3AI GATC 5 cut(s) 37, 240, 457, 475, 634
Sau96I GGNCC 2 cut(s) 45, 602
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 3 cut(s) 48, 501, 655
SduI GDGCHC 2 cut(s) 57, 395
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 586
SsiI CCGC 1 cut(s) 461
SstI GAGCTC 2 cut(s) 57, 395
StyD4I CCNGG 3 cut(s) 46, 499, 653
TaaI ACNGT 1 cut(s) 521
TaiI ACGT 2 cut(s) 96, 400
TaqI TCGA 2 cut(s) 108, 147
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 1 cut(s) 144
TscAI CASTG 4 cut(s) 135, 301, 526, 655
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 420, 452
TspRI CASTG 4 cut(s) 135, 301, 526, 655
Van91I CCANNNNNTGG 1 cut(s) 654
VpaK11BI GGWCC 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.