Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 194 - 242 | 1.1e-07 | PPR repeat family |
| PPR_2 | PF13041 | 297 - 343 | 2e-11 | PPR repeat family |
| PPR_1 | PF12854 | 328 - 359 | 1.1e-08 | PPR repeat |
| PPR_2 | PF13041 | 331 - 379 | 1.5e-07 | PPR repeat family |
| PPR | PF01535 | 335 - 361 | 1.2e-07 | PPR repeat |
| PPR_2 | PF13041 | 435 - 482 | 2.2e-09 | PPR repeat family |
| PPR | PF01535 | 437 - 466 | 4.1e-07 | PPR repeat |
| E_motif | PF20431 | 556 - 610 | 5.1e-12 | E motif |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 232 |
| Acc36I | ACCTGC | 2 cut(s) | 232, 1777 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1667 |
| AccII | CGCG | 1 cut(s) | 125 |
| AciI | CCGC | 4 cut(s) | 104, 308, 1196, 1679 |
| AclI | AACGTT | 1 cut(s) | 1320 |
| AclWI | GGATC | 5 cut(s) | 1162, 1280, 1298, 1311, 1652 |
| AcsI | RAATTY | 3 cut(s) | 391, 634, 1009 |
| AfaI | GTAC | 4 cut(s) | 144, 808, 1238, 1519 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 284, 1314, 1667 |
| AflII | CTTAAG | 2 cut(s) | 257, 986 |
| AflIII | ACRYGT | 1 cut(s) | 1233 |
| AgeI | ACCGGT | 1 cut(s) | 47 |
| AjiI | CACGTC | 1 cut(s) | 1005 |
| AjnI | CCWGG | 2 cut(s) | 884, 1819 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 480, 512 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1295, 1327 |
| AluBI | AGCT | 7 cut(s) | 130, 854, 874, 1055, 1190, 1690, 1718 |
| AluI | AGCT | 7 cut(s) | 130, 854, 874, 1055, 1190, 1690, 1718 |
| Alw21I | GWGCWC | 2 cut(s) | 267, 1527 |
| Alw26I | GTCTC | 7 cut(s) | 10, 37, 81, 788, 938, 1115, 1227 |
| AlwI | GGATC | 5 cut(s) | 1162, 1280, 1298, 1311, 1652 |
| AoxI | GGCC | 1 cut(s) | 1575 |
| ApeKI | GCWGC | 5 cut(s) | 305, 548, 1190, 1193, 1748 |
| ApoI | RAATTY | 3 cut(s) | 391, 634, 1009 |
| AseI | ATTAAT | 1 cut(s) | 930 |
| AsiGI | ACCGGT | 1 cut(s) | 47 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 567 |
| AspLEI | GCGC | 2 cut(s) | 125, 725 |
| AsuHPI | GGTGA | 5 cut(s) | 229, 247, 256, 859, 1822 |
| AsuII | TTCGAA | 3 cut(s) | 561, 830, 1377 |
| AsuNHI | GCTAGC | 1 cut(s) | 1690 |
| BaeGI | GKGCMC | 1 cut(s) | 1267 |
| BamHI | GGATCC | 1 cut(s) | 1303 |
| BanII | GRGCYC | 1 cut(s) | 1254 |
| BauI | CACGAG | 2 cut(s) | 41, 1258 |
| BbsI | GAAGAC | 1 cut(s) | 1605 |
| Bbv12I | GWGCWC | 2 cut(s) | 267, 1527 |
| BbvI | GCAGC | 5 cut(s) | 317, 535, 1177, 1205, 1735 |
| BccI | CCATC | 4 cut(s) | 478, 610, 1615, 1755 |
| BceAI | ACGGC | 3 cut(s) | 219, 225, 1174 |
| BciT130I | CCWGG | 2 cut(s) | 886, 1821 |
| BclI | TGATCA | 1 cut(s) | 1017 |
| BcoDI | GTCTC | 7 cut(s) | 10, 37, 81, 788, 938, 1115, 1227 |
| BfaI | CTAG | 9 cut(s) | 369, 408, 645, 726, 1098, 1116, 1515, 1655, 1691 |
| BfmI | CTRYAG | 1 cut(s) | 1191 |
| BfrI | CTTAAG | 2 cut(s) | 257, 986 |
| BfuAI | ACCTGC | 2 cut(s) | 232, 1777 |
| BisI | GCNGC | 6 cut(s) | 306, 549, 1191, 1194, 1680, 1749 |
| BlsI | GCNGC | 6 cut(s) | 307, 550, 1192, 1195, 1681, 1750 |
| Bme1390I | CCNGG | 2 cut(s) | 886, 1821 |
| BmgBI | CACGTC | 1 cut(s) | 1005 |
| BmiI | GGNNCC | 5 cut(s) | 502, 570, 642, 1095, 1305 |
| BmrFI | CCNGG | 2 cut(s) | 886, 1821 |
| BmrI | ACTGGG | 1 cut(s) | 189 |
| BmsI | GCATC | 5 cut(s) | 241, 334, 355, 435, 1479 |
| BmtI | GCTAGC | 1 cut(s) | 1694 |
| BmuI | ACTGGG | 1 cut(s) | 189 |
| BpiI | GAAGAC | 1 cut(s) | 1605 |
| BpmI | CTGGAG | 1 cut(s) | 725 |
| Bpu14I | TTCGAA | 3 cut(s) | 561, 830, 1377 |
| Bsa29I | ATCGAT | 1 cut(s) | 1282 |
| BsaJI | CCNNGG | 4 cut(s) | 978, 1171, 1299, 1578 |
| BsaWI | WCCGGW | 1 cut(s) | 47 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 126, 156, 317, 347, 525, 555 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 284, 1314, 1667 |
| Bse118I | RCCGGY | 1 cut(s) | 47 |
| Bse1I | ACTGG | 5 cut(s) | 184, 742, 1661, 1737, 1812 |
| Bse3DI | GCAATG | 2 cut(s) | 1462, 1689 |
| BseBI | CCWGG | 2 cut(s) | 886, 1821 |
| BseCI | ATCGAT | 1 cut(s) | 1282 |
| BseDI | CCNNGG | 4 cut(s) | 978, 1171, 1299, 1578 |
| BseGI | GGATG | 6 cut(s) | 70, 256, 360, 370, 393, 450 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 284, 1314, 1667 |
| BseMI | GCAATG | 2 cut(s) | 1462, 1689 |
| BseMII | CTCAG | 1 cut(s) | 270 |
| BseNI | ACTGG | 5 cut(s) | 184, 742, 1661, 1737, 1812 |
| BseRI | GAGGAG | 2 cut(s) | 1246, 1406 |
| BseSI | GKGCMC | 1 cut(s) | 1267 |
| BseXI | GCAGC | 5 cut(s) | 317, 535, 1177, 1205, 1735 |
| Bsh1236I | CGCG | 1 cut(s) | 125 |
| BshFI | GGCC | 1 cut(s) | 1577 |
| BshTI | ACCGGT | 1 cut(s) | 47 |
| BshVI | ATCGAT | 1 cut(s) | 1282 |
| BsiHKAI | GWGCWC | 2 cut(s) | 267, 1527 |
| BsiSI | CCGG | 2 cut(s) | 48, 1270 |
| BslFI | GGGAC | 1 cut(s) | 996 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 284, 1314, 1667 |
| BsmAI | GTCTC | 7 cut(s) | 10, 37, 81, 788, 938, 1115, 1227 |
| BsmBI | CGTCTC | 1 cut(s) | 1227 |
| BsmFI | GGGAC | 1 cut(s) | 996 |
| BsmI | GAATGC | 1 cut(s) | 1080 |
| BsnI | GGCC | 1 cut(s) | 1577 |
| Bsp119I | TTCGAA | 3 cut(s) | 561, 830, 1377 |
| Bsp1286I | GDGCHC | 4 cut(s) | 267, 1254, 1267, 1527 |
| Bsp1407I | TGTACA | 2 cut(s) | 142, 1236 |
| Bsp19I | CCATGG | 1 cut(s) | 1171 |
| BspACI | CCGC | 4 cut(s) | 104, 308, 1196, 1679 |
| BspANI | GGCC | 1 cut(s) | 1577 |
| BspCNI | CTCAG | 1 cut(s) | 271 |
| BspDI | ATCGAT | 1 cut(s) | 1282 |
| BspFNI | CGCG | 1 cut(s) | 125 |
| BspHI | TCATGA | 2 cut(s) | 660, 771 |
| BspLI | GGNNCC | 5 cut(s) | 502, 570, 642, 1095, 1305 |
| BspMAI | CTGCAG | 1 cut(s) | 1195 |
| BspMI | ACCTGC | 2 cut(s) | 232, 1777 |
| BspOI | GCTAGC | 1 cut(s) | 1694 |
| BspPI | GGATC | 5 cut(s) | 1162, 1280, 1298, 1311, 1652 |
| BspT104I | TTCGAA | 3 cut(s) | 561, 830, 1377 |
| BspTI | CTTAAG | 2 cut(s) | 257, 986 |
| BsrDI | GCAATG | 2 cut(s) | 1462, 1689 |
| BsrFI | RCCGGY | 1 cut(s) | 47 |
| BsrGI | TGTACA | 2 cut(s) | 142, 1236 |
| BsrI | ACTGG | 5 cut(s) | 184, 742, 1661, 1737, 1812 |
| BssAI | RCCGGY | 1 cut(s) | 47 |
| BssECI | CCNNGG | 4 cut(s) | 978, 1171, 1299, 1578 |
| BssSI | CACGAG | 2 cut(s) | 41, 1258 |
| BssT1I | CCWWGG | 3 cut(s) | 1171, 1299, 1578 |
| Bst2BI | CACGAG | 2 cut(s) | 41, 1258 |
| Bst2UI | CCWGG | 2 cut(s) | 886, 1821 |
| Bst4CI | ACNGT | 2 cut(s) | 403, 1451 |
| Bst6I | CTCTTC | 2 cut(s) | 114, 1630 |
| BstAFI | CTTAAG | 2 cut(s) | 257, 986 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 716 |
| BstAUI | TGTACA | 2 cut(s) | 142, 1236 |
| BstBI | TTCGAA | 3 cut(s) | 561, 830, 1377 |
| BstC8I | GCNNGC | 4 cut(s) | 162, 721, 1267, 1692 |
| BstDEI | CTNAG | 2 cut(s) | 279, 1826 |
| BstDSI | CCRYGG | 1 cut(s) | 1171 |
| BstEII | GGTNACC | 1 cut(s) | 397 |
| BstF5I | GGATG | 6 cut(s) | 70, 256, 360, 370, 393, 450 |
| BstFNI | CGCG | 1 cut(s) | 125 |
| BstHHI | GCGC | 2 cut(s) | 125, 725 |
| BstMAI | GTCTC | 7 cut(s) | 10, 37, 81, 788, 938, 1115, 1227 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 716 |
| BstNI | CCWGG | 2 cut(s) | 886, 1821 |
| BstNSI | RCATGY | 3 cut(s) | 164, 1181, 1237 |
| BstPI | GGTNACC | 1 cut(s) | 397 |
| BstSCI | CCNGG | 2 cut(s) | 884, 1819 |
| BstSFI | CTRYAG | 1 cut(s) | 1191 |
| BstSLI | GKGCMC | 1 cut(s) | 1267 |
| BstUI | CGCG | 1 cut(s) | 125 |
| BstV1I | GCAGC | 5 cut(s) | 317, 535, 1177, 1205, 1735 |
| BstV2I | GAAGAC | 1 cut(s) | 1605 |
| BstX2I | RGATCY | 4 cut(s) | 1167, 1272, 1303, 1657 |
| BstYI | RGATCY | 4 cut(s) | 1167, 1272, 1303, 1657 |
| Bsu15I | ATCGAT | 1 cut(s) | 1282 |
| BsuRI | GGCC | 1 cut(s) | 1577 |
| BsuTUI | ATCGAT | 1 cut(s) | 1282 |
| BtgI | CCRYGG | 1 cut(s) | 1171 |
| BtgZI | GCGATG | 1 cut(s) | 479 |
| BtrI | CACGTC | 1 cut(s) | 1005 |
| BtsCI | GGATG | 6 cut(s) | 70, 256, 360, 370, 393, 450 |
| BtsIMutI | CAGTG | 3 cut(s) | 1013, 1027, 1447 |
| BveI | ACCTGC | 2 cut(s) | 232, 1777 |
| Cac8I | GCNNGC | 4 cut(s) | 162, 721, 1267, 1692 |
| CciI | TCATGA | 2 cut(s) | 660, 771 |
| CfoI | GCGC | 2 cut(s) | 125, 725 |
| Cfr10I | RCCGGY | 1 cut(s) | 47 |
| ClaI | ATCGAT | 1 cut(s) | 1282 |
| Csp6I | GTAC | 4 cut(s) | 143, 807, 1237, 1518 |
| CspAI | ACCGGT | 1 cut(s) | 47 |
| CviQI | GTAC | 4 cut(s) | 143, 807, 1237, 1518 |
| DdeI | CTNAG | 2 cut(s) | 279, 1826 |
| Eam1104I | CTCTTC | 2 cut(s) | 114, 1630 |
| EarI | CTCTTC | 2 cut(s) | 114, 1630 |
| Eco130I | CCWWGG | 3 cut(s) | 1171, 1299, 1578 |
| Eco24I | GRGCYC | 1 cut(s) | 1254 |
| Eco32I | GATATC | 2 cut(s) | 897, 1329 |
| Eco91I | GGTNACC | 1 cut(s) | 397 |
| EcoO65I | GGTNACC | 1 cut(s) | 397 |
| EcoRI | GAATTC | 2 cut(s) | 391, 1009 |
| EcoRII | CCWGG | 2 cut(s) | 884, 1819 |
| EcoRV | GATATC | 2 cut(s) | 897, 1329 |
| EcoT14I | CCWWGG | 3 cut(s) | 1171, 1299, 1578 |
| EcoT38I | GRGCYC | 1 cut(s) | 1254 |
| ErhI | CCWWGG | 3 cut(s) | 1171, 1299, 1578 |
| Esp3I | CGTCTC | 1 cut(s) | 1227 |
| FaqI | GGGAC | 1 cut(s) | 996 |
| FauI | CCCGC | 1 cut(s) | 111 |
| FbaI | TGATCA | 1 cut(s) | 1017 |
| Fnu4HI | GCNGC | 6 cut(s) | 306, 549, 1191, 1194, 1680, 1749 |
| FokI | GGATG | 6 cut(s) | 77, 263, 367, 377, 400, 457 |
| FriOI | GRGCYC | 1 cut(s) | 1254 |
| Fsp4HI | GCNGC | 6 cut(s) | 306, 549, 1191, 1194, 1680, 1749 |
| FspBI | CTAG | 9 cut(s) | 369, 408, 645, 726, 1098, 1116, 1515, 1655, 1691 |
| GlaI | GCGC | 2 cut(s) | 124, 724 |
| GluI | GCNGC | 6 cut(s) | 306, 549, 1191, 1194, 1680, 1749 |
| GsuI | CTGGAG | 1 cut(s) | 725 |
| HaeIII | GGCC | 1 cut(s) | 1577 |
| HapII | CCGG | 2 cut(s) | 48, 1270 |
| HhaI | GCGC | 2 cut(s) | 125, 725 |
| Hin6I | GCGC | 2 cut(s) | 123, 723 |
| HinP1I | GCGC | 2 cut(s) | 123, 723 |
| HindIII | AAGCTT | 2 cut(s) | 128, 1053 |
| HinfI | GANTC | 8 cut(s) | 30, 37, 154, 736, 974, 995, 1358, 1711 |
| HpaII | CCGG | 2 cut(s) | 48, 1270 |
| HphI | GGTGA | 5 cut(s) | 229, 247, 256, 859, 1822 |
| Hpy166II | GTNNAC | 5 cut(s) | 96, 201, 493, 1343, 1621 |
| Hpy188I | TCNGA | 5 cut(s) | 153, 979, 1138, 1603, 1800 |
| Hpy8I | GTNNAC | 5 cut(s) | 96, 201, 493, 1343, 1621 |
| Hpy99I | CGWCG | 1 cut(s) | 1006 |
| HpyAV | CCTTC | 3 cut(s) | 226, 431, 1459 |
| HpyCH4III | ACNGT | 2 cut(s) | 403, 1451 |
| HpyCH4IV | ACGT | 4 cut(s) | 495, 1004, 1220, 1320 |
| HpyCH4V | TGCA | 9 cut(s) | 160, 305, 448, 454, 710, 1193, 1364, 1492, 1751 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 716 |
| HpyF3I | CTNAG | 2 cut(s) | 279, 1826 |
| HpySE526I | ACGT | 4 cut(s) | 495, 1004, 1220, 1320 |
| HspAI | GCGC | 2 cut(s) | 123, 723 |
| Ksp22I | TGATCA | 1 cut(s) | 1017 |
| LmnI | GCTCC | 1 cut(s) | 1723 |
| Lsp1109I | GCAGC | 5 cut(s) | 317, 535, 1177, 1205, 1735 |
| LweI | GCATC | 5 cut(s) | 241, 334, 355, 435, 1479 |
| MaeI | CTAG | 9 cut(s) | 369, 408, 645, 726, 1098, 1116, 1515, 1655, 1691 |
| MaeII | ACGT | 4 cut(s) | 495, 1004, 1220, 1320 |
| MaeIII | GTNAC | 6 cut(s) | 43, 244, 397, 586, 694, 1445 |
| MboII | GAAGA | 7 cut(s) | 101, 692, 1165, 1508, 1605, 1617, 1778 |
| MfeI | CAATTG | 2 cut(s) | 449, 1365 |
| MflI | RGATCY | 4 cut(s) | 1167, 1272, 1303, 1657 |
| MhlI | GDGCHC | 4 cut(s) | 267, 1254, 1267, 1527 |
| MluCI | AATT | 7 cut(s) | 391, 449, 634, 1009, 1034, 1047, 1365 |
| MlyI | GAGTC | 2 cut(s) | 39, 1367 |
| MmeI | TCCRAC | 4 cut(s) | 131, 478, 824, 951 |
| MroXI | GAANNNNTTC | 1 cut(s) | 567 |
| MslI | CAYNNNNRTG | 5 cut(s) | 579, 821, 1176, 1232, 1238 |
| MspA1I | CMGCKG | 2 cut(s) | 308, 1196 |
| MspCI | CTTAAG | 2 cut(s) | 257, 986 |
| MspI | CCGG | 2 cut(s) | 48, 1270 |
| MspR9I | CCNGG | 2 cut(s) | 886, 1821 |
| MunI | CAATTG | 2 cut(s) | 449, 1365 |
| Mva1269I | GAATGC | 1 cut(s) | 1080 |
| MvaI | CCWGG | 2 cut(s) | 886, 1821 |
| MvnI | CGCG | 1 cut(s) | 125 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 716 |
| NcoI | CCATGG | 1 cut(s) | 1171 |
| NheI | GCTAGC | 1 cut(s) | 1690 |
| NlaIV | GGNNCC | 5 cut(s) | 502, 570, 642, 1095, 1305 |
| NmuCI | GTSAC | 3 cut(s) | 43, 244, 1445 |
| NspI | RCATGY | 3 cut(s) | 164, 1181, 1237 |
| NspV | TTCGAA | 3 cut(s) | 561, 830, 1377 |
| PaeI | GCATGC | 1 cut(s) | 164 |
| PagI | TCATGA | 2 cut(s) | 660, 771 |
| PaqCI | CACCTGC | 1 cut(s) | 232 |
| PciI | ACATGT | 1 cut(s) | 1233 |
| PctI | GAATGC | 1 cut(s) | 1080 |
| PdmI | GAANNNNTTC | 1 cut(s) | 567 |
| PfeI | GAWTC | 6 cut(s) | 37, 154, 736, 974, 995, 1711 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1667 |
| PinAI | ACCGGT | 1 cut(s) | 47 |
| PkrI | GCNGC | 6 cut(s) | 307, 550, 1192, 1195, 1681, 1750 |
| PleI | GAGTC | 2 cut(s) | 38, 1366 |
| PpsI | GAGTC | 2 cut(s) | 38, 1366 |
| PscI | ACATGT | 1 cut(s) | 1233 |
| PshBI | ATTAAT | 1 cut(s) | 930 |
| Psp1406I | AACGTT | 1 cut(s) | 1320 |
| Psp6I | CCWGG | 2 cut(s) | 884, 1819 |
| PspEI | GGTNACC | 1 cut(s) | 397 |
| PspGI | CCWGG | 2 cut(s) | 884, 1819 |
| PspN4I | GGNNCC | 5 cut(s) | 502, 570, 642, 1095, 1305 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1077, 1109 |
| PstI | CTGCAG | 1 cut(s) | 1195 |
| PsuI | RGATCY | 4 cut(s) | 1167, 1272, 1303, 1657 |
| RsaI | GTAC | 4 cut(s) | 144, 808, 1238, 1519 |
| RsaNI | GTAC | 4 cut(s) | 143, 807, 1237, 1518 |
| RseI | CAYNNNNRTG | 5 cut(s) | 579, 821, 1176, 1232, 1238 |
| SatI | GCNGC | 6 cut(s) | 306, 549, 1191, 1194, 1680, 1749 |
| SchI | GAGTC | 2 cut(s) | 39, 1367 |
| ScrFI | CCNGG | 2 cut(s) | 886, 1821 |
| SduI | GDGCHC | 4 cut(s) | 267, 1254, 1267, 1527 |
| SfaNI | GCATC | 5 cut(s) | 241, 334, 355, 435, 1479 |
| SfcI | CTRYAG | 1 cut(s) | 1191 |
| SfuI | TTCGAA | 3 cut(s) | 561, 830, 1377 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 579, 821, 1176, 1232, 1238 |
| SmlI | CTYRAG | 2 cut(s) | 257, 986 |
| SmoI | CTYRAG | 2 cut(s) | 257, 986 |
| SphI | GCATGC | 1 cut(s) | 164 |
| Sse9I | AATT | 7 cut(s) | 391, 449, 634, 1009, 1034, 1047, 1365 |
| SsiI | CCGC | 4 cut(s) | 104, 308, 1196, 1679 |
| SspI | AATATT | 2 cut(s) | 1374, 1479 |
| SspMI | CTAG | 9 cut(s) | 369, 408, 645, 726, 1098, 1116, 1515, 1655, 1691 |
| StyD4I | CCNGG | 2 cut(s) | 884, 1819 |
| StyI | CCWWGG | 3 cut(s) | 1171, 1299, 1578 |
| TaaI | ACNGT | 2 cut(s) | 403, 1451 |
| TaiI | ACGT | 4 cut(s) | 498, 1007, 1223, 1323 |
| TaqI | TCGA | 8 cut(s) | 35, 267, 524, 561, 830, 1282, 1377, 1461 |
| TaqII | GACCGA | 1 cut(s) | 1545 |
| TasI | AATT | 7 cut(s) | 391, 449, 634, 1009, 1034, 1047, 1365 |
| TatI | WGTACW | 3 cut(s) | 142, 1236, 1517 |
| TauI | GCSGC | 1 cut(s) | 1682 |
| TfiI | GAWTC | 6 cut(s) | 37, 154, 736, 974, 995, 1711 |
| TscAI | CASTG | 3 cut(s) | 1020, 1027, 1454 |
| TseFI | GTSAC | 3 cut(s) | 43, 244, 1445 |
| TseI | GCWGC | 5 cut(s) | 305, 548, 1190, 1193, 1748 |
| Tsp45I | GTSAC | 3 cut(s) | 43, 244, 1445 |
| TspGWI | ACGGA | 1 cut(s) | 263 |
| TspRI | CASTG | 3 cut(s) | 1020, 1027, 1454 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1667 |
| Vha464I | CTTAAG | 2 cut(s) | 257, 986 |
| VspI | ATTAAT | 1 cut(s) | 930 |
| XapI | RAATTY | 3 cut(s) | 391, 634, 1009 |
| XceI | RCATGY | 3 cut(s) | 164, 1181, 1237 |
| XmnI | GAANNNNTTC | 1 cut(s) | 567 |
| XspI | CTAG | 9 cut(s) | 369, 408, 645, 726, 1098, 1116, 1515, 1655, 1691 |