Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

68381024 .. 68388305

Gene Structure 7282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG376800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGGTCCACACCCATCTCCTCAAAACCGGCTTCTTCTCCGACGTCTACTCAGCCACCGCTCTCACCGACGCTTACATGAAGCTCAATCTCATGGACGATGCGCTCAAGGTGTTCGACGAAATGCCTGACCGAAACTTGGCTTCGGTAAACGCTGTGATTTCCGGGCTGTTGCATAATGGACATCGCAGAGAGGCTTTAAAGGTGTTCAAGAGCGTTGGTTTTGGAGGGTTCGGGTTGAATTCGGTTACTATAGCCAGTGTGCTTTCGGCGTGTGACAATGCGAAGGAGGGGATGGGAACGCATTGCGCTGCGGTGAAGCTCGGGGTTGAGAGTGATGTTTATGTTGCTACATCAGCTGTGAGTATGTATTCGAGCTGTGGAGAGTTGGTTTCTGCTGCAAAGTTGTTTGAAGATATGCCTGTCAAGAATGTGGTGAGCTATAATGCTTTTATAACAGGGCTTTTGCAGAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGGTTTCGGTTCTCTCTGCTTGTGCTAGTGTTTTGTATCTCCGATTTGGCAGGCAGGTTCATGGTTTGATCGTGAAAATTGCGAGTGGGATTGATGCTATGACTAGAACAGCGCTTGTCGACATGTATTCCAAGTGTGGGTGTTGGCAGCTCGGGTACCAAATATTCGAAGATCTAGATGAAACAAGGACCTTGTTTATATGGAATGCCATGATTGCAGGAGTGATGTTGAATGCGCAGTGGGAGATTGCTGTTGAGCTTTTCGAACAGCTAGAATCTGAAGGGTTTAAGCCTGATTCAGTGACTTGGAATTCAATGATCAGCGGGTTTTCACAACTAGGGATGGGAAACGAAGCTTTCAAGTATTTTAAGAGAATGCAATCGACTGGTGTAGCTCCGAGTTTGAAATCTGTCACTAGTCTCTTGCAAGCCTGTGCAGATTCATCTGCTCTGCAATGTGGACAAGAGGTTCATGGGCATGCAATTAGGACTGATATTAGCAGTGATCTGTTCTTTTCAACCGCTCTCATTGACACGTACATGAAATGTGGGCAGTCTTCTTGGGCAAGAAGAGTTTTTGATTCCTTTCATGTAAAACCTGACGATCCAGCATTTTGGAATGCAACAATATCTGGGTATGGAAGAGAAGGAGAGAATGAATCTGCATTTCGAATATTTGATCAGATGCTCGAAGAAAAAGTTCAACCAAATGCAGCAACTTTTATAAGTCTTCTATCTATGTGTAGTCACAGTGGTTTAATTGACAAGGGATGGCAAATTTTTAGGATGATGGATAGAGATTTTGGAATGAAACCAGATCCGAAACATTATGGTTGTTTGATTGACCTTTTAGGTAGATCAGGCAGGTTGGATGAAGCCCGGGAATTAACACACGAGTTATCAGAGCCTTCTGGATCAGTTTTTGCTTCTTTGCTAGGTGCTTGCGAGTCCCATTTAAATCTAGAACTGGGGAAAGAAATGGCCATAAAACTTTCAGAATTAGAGCCAGAGAACCCTACACCTTTCCTGATACTGTCCAAGATATATGCTGGGCTTGGGAGGTGGAAGGATGCAGAAATCATTAGGGGAATGATGGATGATCAAAAGTCAAGAAAGCTCCCTGGCTTTAGCTTATTACAATTGCATGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

566

Amino Acids

62.41

Weight (kDa)

5.75

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	142 - 191	5.5e-08	PPR repeat family
PPR_2	PF13041	248 - 292	2.6e-10	PPR repeat family
PPR_long	PF17177	264 - 376	5.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	269 - 329	2.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	277 - 308	8.2e-07	PPR repeat
PPR_2	PF13041	280 - 328	7.2e-12	PPR repeat family
PPR	PF01535	283 - 312	6.4e-09	PPR repeat
PPR_2	PF13041	387 - 431	2.3e-10	PPR repeat family
E_motif	PF20431	500 - 561	2e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	452, 1271
AatII	GACGTC	1 cut(s)	45
Acc16I	TGCGCA	1 cut(s)	783
Acc36I	ACCTGC	2 cut(s)	592, 1401
Acc65I	GGTACC	1 cut(s)	702
AccB1I	GGYRCC	1 cut(s)	702
AccBSI	CCGCTC	2 cut(s)	59, 1070
AccI	GTMKAC	2 cut(s)	45, 666
AciI	CCGC	4 cut(s)	57, 311, 870, 1068
AclWI	GGATC	3 cut(s)	1145, 1358, 1468
AcoI	YGGCCR	1 cut(s)	1527
AcsI	RAATTY	4 cut(s)	238, 535, 856, 1323
AcuI	CTGAAG	1 cut(s)	846
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	2 cut(s)	704, 1085
AfeI	AGCGCT	1 cut(s)	660
AfiI	CCNNNNNNNGG	2 cut(s)	136, 684
AflIII	ACRYGT	2 cut(s)	669, 1080
AgsI	TTSAA	9 cut(s)	208, 238, 410, 778, 861, 907, 952, 1065, 1250
AhlI	ACTAGT	1 cut(s)	962
AjnI	CCWGG	1 cut(s)	1666
AloI	GAACNNNNNNTCC	2 cut(s)	999, 1031
Alw26I	GTCTC	1 cut(s)	971
AlwI	GGATC	3 cut(s)	1145, 1358, 1468
Ama87I	CYCGRG	3 cut(s)	320, 698, 1425
Aor51HI	AGCGCT	1 cut(s)	660
AoxI	GGCC	1 cut(s)	1527
ApeKI	GCWGC	4 cut(s)	308, 395, 694, 1259
ApoI	RAATTY	4 cut(s)	238, 535, 856, 1323
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
Asp700I	GAANNNNTTC	1 cut(s)	1245
Asp718I	GGTACC	1 cut(s)	702
AspLEI	GCGC	4 cut(s)	103, 308, 661, 784
AspS9I	GGNCC	2 cut(s)	4, 735
AsuC2I	CCSGG	3 cut(s)	163, 1426, 1427
AsuHPI	GGTGA	4 cut(s)	55, 325, 445, 536
AsuII	TTCGAA	3 cut(s)	714, 810, 1216
AvaI	CYCGRG	3 cut(s)	320, 698, 1425
AvaII	GGWCC	2 cut(s)	4, 735
BalI	TGGCCA	1 cut(s)	1529
BanI	GGYRCC	1 cut(s)	702
BauI	CACGAG	1 cut(s)	1439
BbsI	GAAGAC	2 cut(s)	1095, 1268
BbvI	GCAGC	4 cut(s)	295, 382, 706, 1271
BccI	CCATC	6 cut(s)	21, 286, 883, 1311, 1330, 1633
BciT130I	CCWGG	1 cut(s)	1668
BclI	TGATCA	3 cut(s)	864, 1225, 1645
BcnI	CCSGG	3 cut(s)	163, 1426, 1427
BcoDI	GTCTC	1 cut(s)	971
BcuI	ACTAGT	1 cut(s)	962
BfaI	CTAG	8 cut(s)	573, 651, 722, 818, 884, 963, 1481, 1508
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	662
BfuAI	ACCTGC	2 cut(s)	592, 1401
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	4 cut(s)	309, 396, 695, 1260
BlsI	GCNGC	4 cut(s)	310, 397, 696, 1261
Bme1390I	CCNGG	4 cut(s)	163, 1426, 1427, 1668
Bme18I	GGWCC	2 cut(s)	4, 735
BmeT110I	CYCGRG	3 cut(s)	320, 698, 1425
BmgT120I	GGNCC	2 cut(s)	4, 735
BmiI	GGNNCC	2 cut(s)	477, 704
BmrFI	CCNGG	4 cut(s)	163, 1426, 1427, 1668
BmrI	ACTGGG	1 cut(s)	1523
BmsI	GCATC	4 cut(s)	88, 631, 1221, 1606
BmuI	ACTGGG	1 cut(s)	1523
BpiI	GAAGAC	2 cut(s)	1095, 1268
Bpu14I	TTCGAA	3 cut(s)	714, 810, 1216
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	3 cut(s)	163, 1426, 1427
BsaAI	YACGTR	1 cut(s)	1083
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	479, 1425, 1666
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 684
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	3 cut(s)	255, 937, 1518
Bse3DI	GCAATG	2 cut(s)	301, 1007
BseBI	CCWGG	1 cut(s)	1668
BseDI	CCNNGG	3 cut(s)	479, 1425, 1666
BseGI	GGATG	8 cut(s)	297, 499, 894, 1322, 1338, 1423, 1621, 1648
BseLI	CCNNNNNNNGG	2 cut(s)	136, 684
BseMI	GCAATG	2 cut(s)	301, 1007
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	3 cut(s)	255, 937, 1518
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	295, 382, 706, 1271
BseYI	CCCAGC	1 cut(s)	1595
BsgI	GTGCAG	1 cut(s)	1002
BshFI	GGCC	1 cut(s)	1529
BshNI	GGYRCC	1 cut(s)	702
BsiHKCI	CYCGRG	3 cut(s)	320, 698, 1425
BsiSI	CCGG	3 cut(s)	27, 162, 1426
BslFI	GGGAC	1 cut(s)	1480
BslI	CCNNNNNNNGG	2 cut(s)	136, 684
BsmAI	GTCTC	1 cut(s)	971
BsmFI	GGGAC	1 cut(s)	1480
BsmI	GAATGC	4 cut(s)	757, 784, 927, 1171
BsnI	GGCC	1 cut(s)	1529
BsoBI	CYCGRG	3 cut(s)	320, 698, 1425
Bsp119I	TTCGAA	3 cut(s)	714, 810, 1216
BspACI	CCGC	4 cut(s)	57, 311, 870, 1068
BspANI	GGCC	1 cut(s)	1529
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	477, 704
BspMI	ACCTGC	2 cut(s)	592, 1401
BspPI	GGATC	3 cut(s)	1145, 1358, 1468
BspT104I	TTCGAA	3 cut(s)	714, 810, 1216
BspT107I	GGYRCC	1 cut(s)	702
BsrBI	CCGCTC	2 cut(s)	59, 1070
BsrDI	GCAATG	2 cut(s)	301, 1007
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	3 cut(s)	255, 937, 1518
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	479, 1425, 1666
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	1439
BssT1I	CCWWGG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	1439
Bst2UI	CCWGG	1 cut(s)	1668
Bst4CI	ACNGT	2 cut(s)	1298, 1581
Bst6I	CTCTTC	2 cut(s)	1111, 1183
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	1083
BstBI	TTCGAA	3 cut(s)	714, 810, 1216
BstC8I	GCNNGC	4 cut(s)	599, 975, 1026, 1489
BstDEI	CTNAG	1 cut(s)	49
BstF5I	GGATG	8 cut(s)	297, 499, 894, 1322, 1338, 1423, 1621, 1648
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	4 cut(s)	103, 308, 661, 784
BstMAI	GTCTC	1 cut(s)	971
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 761
BstNI	CCWGG	1 cut(s)	1668
BstNSI	RCATGY	3 cut(s)	519, 673, 1028
BstSCI	CCNGG	4 cut(s)	161, 1424, 1425, 1666
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	295, 382, 706, 1271
BstV2I	GAAGAC	2 cut(s)	1095, 1268
BstX2I	RGATCY	2 cut(s)	718, 1363
BstXI	CCANNNNNNTGG	1 cut(s)	1161
BstYI	RGATCY	2 cut(s)	718, 1363
BsuRI	GGCC	1 cut(s)	1529
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	8 cut(s)	297, 499, 894, 1322, 1338, 1423, 1621, 1648
BtsI	GCAGTG	2 cut(s)	791, 1054
BtsIMutI	CAGTG	6 cut(s)	262, 546, 791, 852, 1054, 1303
BveI	ACCTGC	2 cut(s)	592, 1401
Cac8I	GCNNGC	4 cut(s)	599, 975, 1026, 1489
CfoI	GCGC	4 cut(s)	103, 308, 661, 784
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	4, 735
Cfr9I	CCCGGG	1 cut(s)	1425
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	703, 1084
CviQI	GTAC	2 cut(s)	703, 1084
DdeI	CTNAG	1 cut(s)	49
DraI	TTTAAA	2 cut(s)	198, 1503
EaeI	YGGCCR	1 cut(s)	1527
Eam1104I	CTCTTC	2 cut(s)	1111, 1183
EarI	CTCTTC	2 cut(s)	1111, 1183
Eco130I	CCWWGG	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	4, 735
Eco47III	AGCGCT	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	846
Eco88I	CYCGRG	3 cut(s)	320, 698, 1425
EcoO109I	RGGNCCY	1 cut(s)	735
EcoRI	GAATTC	3 cut(s)	238, 535, 856
EcoRII	CCWGG	1 cut(s)	1666
EcoT14I	CCWWGG	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	479
FaqI	GGGAC	1 cut(s)	1480
FauI	CCCGC	1 cut(s)	863
FbaI	TGATCA	3 cut(s)	864, 1225, 1645
FblI	GTMKAC	2 cut(s)	45, 666
Fnu4HI	GCNGC	4 cut(s)	309, 396, 695, 1260
FokI	GGATG	8 cut(s)	304, 506, 901, 1329, 1345, 1430, 1628, 1655
Fsp4HI	GCNGC	4 cut(s)	309, 396, 695, 1260
FspBI	CTAG	8 cut(s)	573, 651, 722, 818, 884, 963, 1481, 1508
FspI	TGCGCA	1 cut(s)	783
GlaI	GCGC	4 cut(s)	102, 307, 660, 783
GluI	GCNGC	4 cut(s)	309, 396, 695, 1260
GsaI	CCCAGC	1 cut(s)	1599
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	1 cut(s)	1529
HapII	CCGG	3 cut(s)	27, 162, 1426
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	4 cut(s)	103, 308, 661, 784
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	4 cut(s)	101, 306, 659, 782
HinP1I	GCGC	4 cut(s)	101, 306, 659, 782
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	6 cut(s)	821, 842, 986, 1127, 1205, 1493
HpaII	CCGG	3 cut(s)	27, 162, 1426
HphI	GGTGA	4 cut(s)	55, 325, 445, 536
Hpy166II	GTNNAC	5 cut(s)	7, 46, 148, 667, 1007
Hpy188I	TCNGA	9 cut(s)	40, 534, 590, 826, 945, 1230, 1368, 1450, 1543
Hpy188III	TCNNGA	8 cut(s)	208, 424, 619, 722, 1458, 1508, 1573, 1656
Hpy8I	GTNNAC	5 cut(s)	7, 46, 148, 667, 1007
Hpy99I	CGWCG	3 cut(s)	44, 71, 119
HpyAV	CCTTC	5 cut(s)	277, 821, 1187, 1464, 1606
HpyCH4III	ACNGT	2 cut(s)	1298, 1581
HpyCH4IV	ACGT	2 cut(s)	42, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 761
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	2 cut(s)	42, 1082
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	4 cut(s)	101, 306, 659, 782
KpnI	GGTACC	1 cut(s)	706
Ksp22I	TGATCA	3 cut(s)	864, 1225, 1645
LmnI	GCTCC	2 cut(s)	946, 1668
Lsp1109I	GCAGC	4 cut(s)	295, 382, 706, 1271
LweI	GCATC	4 cut(s)	88, 631, 1221, 1606
MaeI	CTAG	8 cut(s)	573, 651, 722, 818, 884, 963, 1481, 1508
MaeII	ACGT	2 cut(s)	42, 1082
MaeIII	GTNAC	6 cut(s)	244, 272, 541, 847, 958, 1292
MbiI	CCGCTC	2 cut(s)	59, 1070
MboII	GAAGA	8 cut(s)	25, 422, 728, 1095, 1128, 1200, 1250, 1268
MfeI	CAATTG	1 cut(s)	1685
MflI	RGATCY	2 cut(s)	718, 1363
MlsI	TGGCCA	1 cut(s)	1529
MluNI	TGGCCA	1 cut(s)	1529
MlyI	GAGTC	1 cut(s)	1502
MmeI	TCCRAC	3 cut(s)	63, 471, 1395
MnlI	CCTC	7 cut(s)	29, 184, 218, 280, 515, 1006, 1599
Mox20I	TGGCCA	1 cut(s)	1529
MroXI	GAANNNNTTC	1 cut(s)	1245
MscI	TGGCCA	1 cut(s)	1529
MseI	TTAA	7 cut(s)	197, 501, 834, 915, 1304, 1433, 1502
MslI	CAYNNNNRTG	2 cut(s)	1023, 1085
Msp20I	TGGCCA	1 cut(s)	1529
MspA1I	CMGCKG	2 cut(s)	356, 870
MspI	CCGG	3 cut(s)	27, 162, 1426
MspR9I	CCNGG	4 cut(s)	163, 1426, 1427, 1668
MunI	CAATTG	1 cut(s)	1685
Mva1269I	GAATGC	4 cut(s)	757, 784, 927, 1171
MvaI	CCWGG	1 cut(s)	1668
MwoI	GCNNNNNNNGC	2 cut(s)	353, 761
NciI	CCSGG	3 cut(s)	163, 1426, 1427
NlaIV	GGNNCC	2 cut(s)	477, 704
NmuCI	GTSAC	5 cut(s)	272, 541, 847, 958, 1292
NsbI	TGCGCA	1 cut(s)	783
NspI	RCATGY	3 cut(s)	519, 673, 1028
NspV	TTCGAA	3 cut(s)	714, 810, 1216
PaeI	GCATGC	1 cut(s)	1028
PciI	ACATGT	1 cut(s)	669
PctI	GAATGC	4 cut(s)	757, 784, 927, 1171
PdmI	GAANNNNTTC	1 cut(s)	1245
PfeI	GAWTC	5 cut(s)	821, 842, 986, 1127, 1205
PkrI	GCNGC	4 cut(s)	310, 397, 696, 1261
PleI	GAGTC	1 cut(s)	1501
PpsI	GAGTC	1 cut(s)	1501
Ppu21I	YACGTR	1 cut(s)	1083
PpuMI	RGGWCCY	1 cut(s)	735
PscI	ACATGT	1 cut(s)	669
PsiI	TTATAA	2 cut(s)	452, 1271
Psp5II	RGGWCCY	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	1666
PspFI	CCCAGC	1 cut(s)	1595
PspGI	CCWGG	1 cut(s)	1666
PspN4I	GGNNCC	2 cut(s)	477, 704
PspPI	GGNCC	2 cut(s)	4, 735
PspPPI	RGGWCCY	1 cut(s)	735
PsuI	RGATCY	2 cut(s)	718, 1363
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	704, 1085
RsaNI	GTAC	2 cut(s)	703, 1084
RseI	CAYNNNNRTG	2 cut(s)	1023, 1085
SalI	GTCGAC	1 cut(s)	665
SaqAI	TTAA	7 cut(s)	197, 501, 834, 915, 1304, 1433, 1502
SatI	GCNGC	4 cut(s)	309, 396, 695, 1260
Sau96I	GGNCC	2 cut(s)	4, 735
SchI	GAGTC	1 cut(s)	1502
ScrFI	CCNGG	4 cut(s)	163, 1426, 1427, 1668
SfaNI	GCATC	4 cut(s)	88, 631, 1221, 1606
SfcI	CTRYAG	1 cut(s)	249
SfuI	TTCGAA	3 cut(s)	714, 810, 1216
SinI	GGWCC	2 cut(s)	4, 735
SmaI	CCCGGG	1 cut(s)	1427
SmiI	ATTTAAAT	1 cut(s)	1503
SmiMI	CAYNNNNRTG	2 cut(s)	1023, 1085
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	962
SphI	GCATGC	1 cut(s)	1028
SsiI	CCGC	4 cut(s)	57, 311, 870, 1068
SspI	AATATT	2 cut(s)	711, 1221
SspMI	CTAG	8 cut(s)	573, 651, 722, 818, 884, 963, 1481, 1508
StyD4I	CCNGG	4 cut(s)	161, 1424, 1425, 1666
StyI	CCWWGG	1 cut(s)	479
SwaI	ATTTAAAT	1 cut(s)	1503
TaaI	ACNGT	2 cut(s)	1298, 1581
TaiI	ACGT	2 cut(s)	45, 1085
TaqI	TCGA	8 cut(s)	114, 371, 666, 714, 810, 929, 1216, 1236
TaqII	GACCGA	1 cut(s)	144
TfiI	GAWTC	5 cut(s)	821, 842, 986, 1127, 1205
Tru1I	TTAA	7 cut(s)	197, 501, 834, 915, 1304, 1433, 1502
Tru9I	TTAA	7 cut(s)	197, 501, 834, 915, 1304, 1433, 1502
TscAI	CASTG	6 cut(s)	262, 546, 791, 852, 1054, 1303
TseFI	GTSAC	5 cut(s)	272, 541, 847, 958, 1292
TseI	GCWGC	4 cut(s)	308, 395, 694, 1259
Tsp45I	GTSAC	5 cut(s)	272, 541, 847, 958, 1292
TspMI	CCCGGG	1 cut(s)	1425
TspRI	CASTG	6 cut(s)	262, 546, 791, 852, 1054, 1303
VpaK11BI	GGWCC	2 cut(s)	4, 735
XapI	RAATTY	4 cut(s)	238, 535, 856, 1323
XbaI	TCTAGA	2 cut(s)	721, 1507
XceI	RCATGY	3 cut(s)	519, 673, 1028
XmaI	CCCGGG	1 cut(s)	1425
XmiI	GTMKAC	2 cut(s)	45, 666
XmnI	GAANNNNTTC	1 cut(s)	1245
XspI	CTAG	8 cut(s)	573, 651, 722, 818, 884, 963, 1481, 1508
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.