Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003684.1

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

3834 .. 4511

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003684.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggtccacacccatcacctcaaaactgggttcttctccgacgtctacgcagccaccgctctcacgaacgcttccatgaagctcaacctcttggacaatgcactcaaagtgttcgatgaaatgcctcaccgaaacttggcacccgtaaacactgtgatttcctggttgttgcataatggacatcgcagagaggctttaaaggtgtgcaagagcgttggttttggatggctcaggttgaattcggttactatagctagtgtgttttcagcatgtgacaatgcgaagcaggggatgggaatggattgcgtggcggtgaagctcggggttaagagtgatgtttatgttgctacctcagctgtgagtatgtattggagctgtggggagttggccatggtttctgctgcaaagttgtttgaacatatgcctgtcaagaatgtggtgagctataatgcttttataacaaggcttttacagaatggggttccaagggtgcatggtttgatcatgaaagatgatggtatcgacgttggagttcggatgcggtggaagaggtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

185

Amino Acids

20.57

Weight (kDa)

9.51

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AatII	GACGTC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	139
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	3 cut(s)	57, 311, 541
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	238, 416
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	6 cut(s)	82, 254, 319, 356, 375, 444
AluI	AGCT	6 cut(s)	82, 254, 319, 356, 375, 444
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	50, 401
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	8, 119, 325, 451
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	139
BbvCI	CCTCAGC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	62, 388
BccI	CCATC	4 cut(s)	21, 219, 286, 509
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	501
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	51, 402
BlsI	GCNGC	2 cut(s)	52, 403
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	141, 483
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	36
Bpu10I	CCTNAGC	2 cut(s)	230, 352
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	390, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	390, 485
BseGI	GGATG	3 cut(s)	230, 297, 543
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	244, 366
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	62, 388
BshFI	GGCC	1 cut(s)	389
BshNI	GGYRCC	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	501
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	3 cut(s)	57, 311, 541
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	2 cut(s)	243, 365
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	141, 483
BspT107I	GGYRCC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	390, 485
BssMI	GATC	1 cut(s)	501
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	390, 485
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	542
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	230, 352
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	230, 297, 543
BstKTI	GATC	1 cut(s)	504
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 353
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	62, 388
BsuRI	GGCC	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	390
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	230, 297, 543
BtsIMutI	CAGTG	1 cut(s)	150
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	5 cut(s)	76, 270, 391, 494, 505
DdeI	CTNAG	2 cut(s)	230, 352
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco130I	CCWWGG	2 cut(s)	390, 485
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	390, 485
ErhI	CCWWGG	2 cut(s)	390, 485
FaeI	CATG	5 cut(s)	79, 273, 394, 497, 508
FatI	CATG	5 cut(s)	75, 269, 390, 493, 504
FauNDI	CATATG	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	51, 402
FokI	GGATG	3 cut(s)	237, 304, 550
Fsp4HI	GCNGC	2 cut(s)	51, 402
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	51, 402
HaeIII	GGCC	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	79, 273, 394, 497, 508
HphI	GGTGA	4 cut(s)	8, 119, 325, 451
Hpy166II	GTNNAC	3 cut(s)	7, 46, 148
Hpy188I	TCNGA	2 cut(s)	40, 537
Hpy188III	TCNNGA	3 cut(s)	64, 430, 505
Hpy8I	GTNNAC	3 cut(s)	7, 46, 148
Hpy99I	CGWCG	2 cut(s)	44, 527
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	2 cut(s)	42, 525
HpyCH4V	TGCA	5 cut(s)	101, 172, 207, 404, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 353
HpyF3I	CTNAG	2 cut(s)	230, 352
HpySE526I	ACGT	2 cut(s)	42, 525
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	5 cut(s)	79, 273, 394, 497, 508
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	6 cut(s)	12, 148, 175, 217, 272, 438
Lsp1109I	GCAGC	2 cut(s)	62, 388
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	2 cut(s)	42, 525
MaeIII	GTNAC	2 cut(s)	244, 272
MalI	GATC	1 cut(s)	503
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	1 cut(s)	501
MboII	GAAGA	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	1 cut(s)	238
MluNI	TGGCCA	1 cut(s)	389
MmeI	TCCRAC	2 cut(s)	63, 508
MnlI	CCTC	6 cut(s)	29, 98, 135, 184, 361, 543
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	2 cut(s)	197, 327
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	56, 353
NcoI	CCATGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	5 cut(s)	79, 273, 394, 497, 508
NlaIV	GGNNCC	2 cut(s)	141, 483
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	1 cut(s)	273
PagI	TCATGA	1 cut(s)	504
PkrI	GCNGC	2 cut(s)	52, 403
PsiI	TTATAA	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	141, 483
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	197, 327
SatI	GCNGC	2 cut(s)	51, 402
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	528
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	3 cut(s)	57, 311, 541
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	2 cut(s)	390, 485
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	2 cut(s)	45, 528
TaqI	TCGA	2 cut(s)	114, 522
TasI	AATT	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	197, 327
Tru9I	TTAA	2 cut(s)	197, 327
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	50, 401
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	3 cut(s)	92, 132, 521
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.