Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

60124683 .. 60125687

Gene Structure 1005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTGGCATTGGGAAGCGGAGGAGAACGGCGTCATTTTTGTTGTGTTGAATAATCAAGACTTAAAAAGCTGCCTTCTTGCCTGCCCACGAGCTCCGAAGCTCAGTTTTACCCGGAGGCACATGGCCCACAGCTGCTGGGGTCGGACTTTGACCAGTCCTACATGCAACCCGGAACCCAGCTTGATTCTTGTCCAAGCTTTGATTCTTCTCAAAGCCTATGCCAAGCTCTTATCAGCCCCTCATGTCCAAATAGTCCACACCCATCTCCTCAAAACCGGGTTCTTCTCCGATGTCTACACAGCCACCGCTCTCACGGACGCTTCCATGAAGCTCAACCTCATGGACAATGCACTCAAGGTGTTCGACAAAATGCCTTACCGAAACTTGGCTCCAGCAAACACTGTGATTTCCAGGTTGTTGCATAATGGACATCGCAGAGAGGCTTTAAAGGTGTGCAAGAGCTTTGGTTTTGGAGGGCTCGGGTTGAATTCGGTTACTATAGCTAGTGTGTTTTCGGCGTGTGACAATGTGAAGCAGGGGATGGGAATGGATTGCATGGCGGTGAAGCTCAAGGTTGAGAGTGATGTTTATGTTGCTACCTCAGCTGTGAGTATGTATTGGAGCTGTGGGGAGTTGGTTTCTGCTGCAAAGTTGTTTGAACATATGCCTGTCAAGAATGTGGTGAGCTATAATGCTTTTATAACAGGGCTTTTGCAAAATAGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTAAAAAAACCGAATTCAATGACATTGGTTTCAGTTCTTTCTGCTTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

275

Amino Acids

30.41

Weight (kDa)

9.26

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AccBSI	CCGCTC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	3 cut(s)	17, 306, 560
AcsI	RAATTY	2 cut(s)	487, 785
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	4 cut(s)	49, 487, 659, 790
AjnI	CCWGG	1 cut(s)	410
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
Alw21I	GWGCWC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	479
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	69, 132, 644
ApoI	RAATTY	2 cut(s)	487, 785
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	3 cut(s)	112, 170, 277
AsuHPI	GGTGA	2 cut(s)	574, 694
AvaI	CYCGRG	1 cut(s)	479
BanII	GRGCYC	2 cut(s)	94, 480
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	94
BbvCI	CCTCAGC	1 cut(s)	601
BbvI	GCAGC	3 cut(s)	56, 119, 631
BccI	CCATC	2 cut(s)	270, 535
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	412
BcnI	CCSGG	3 cut(s)	112, 170, 277
BfaI	CTAG	2 cut(s)	504, 823
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	3 cut(s)	70, 133, 645
BlsI	GCNGC	3 cut(s)	71, 134, 646
Bme1390I	CCNGG	4 cut(s)	112, 170, 277, 412
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	3 cut(s)	174, 390, 726
BmrFI	CCNGG	4 cut(s)	112, 170, 277, 412
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	601
BpuEI	CTTGAG	2 cut(s)	338, 554
BpuMI	CCSGG	3 cut(s)	112, 170, 277
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	2 cut(s)	546, 748
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	115, 615
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	2 cut(s)	35, 257
BseXI	GCAGC	3 cut(s)	56, 119, 631
BseYI	CCCAGC	2 cut(s)	135, 176
BshFI	GGCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	3 cut(s)	112, 170, 276
BslI	CCNNNNNNNGG	1 cut(s)	385
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	94, 480
BspACI	CCGC	3 cut(s)	17, 306, 560
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	2 cut(s)	114, 614
BspLI	GGNNCC	3 cut(s)	174, 390, 726
BsrBI	CCGCTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	728
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	728
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	1 cut(s)	403
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	101, 601
BstF5I	GGATG	2 cut(s)	546, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	2 cut(s)	165, 768
BstSCI	CCNGG	4 cut(s)	110, 168, 275, 410
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	3 cut(s)	56, 119, 631
BsuRI	GGCC	1 cut(s)	125
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	546, 748
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	2 cut(s)	19, 326
CviAII	CATG	7 cut(s)	121, 162, 242, 325, 340, 556, 765
DdeI	CTNAG	2 cut(s)	101, 601
DraI	TTTAAA	1 cut(s)	447
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	728
Eco24I	GRGCYC	2 cut(s)	94, 480
Eco53kI	GAGCTC	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	92
EcoRI	GAATTC	2 cut(s)	487, 785
EcoRII	CCWGG	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	728
EcoT38I	GRGCYC	2 cut(s)	94, 480
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	7 cut(s)	124, 165, 245, 328, 343, 559, 768
FatI	CATG	7 cut(s)	120, 161, 241, 324, 339, 555, 764
FauNDI	CATATG	1 cut(s)	663
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	70, 133, 645
FokI	GGATG	2 cut(s)	553, 755
FriOI	GRGCYC	2 cut(s)	94, 480
Fsp4HI	GCNGC	3 cut(s)	70, 133, 645
FspBI	CTAG	2 cut(s)	504, 823
GluI	GCNGC	3 cut(s)	70, 133, 645
GsaI	CCCAGC	2 cut(s)	139, 180
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	3 cut(s)	112, 170, 276
HgaI	GACGC	2 cut(s)	19, 326
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	7 cut(s)	124, 165, 245, 328, 343, 559, 768
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	2 cut(s)	184, 202
HpaII	CCGG	3 cut(s)	112, 170, 276
HphI	GGTGA	2 cut(s)	574, 694
Hpy166II	GTNNAC	2 cut(s)	256, 295
Hpy188I	TCNGA	3 cut(s)	96, 144, 289
Hpy188III	TCNNGA	2 cut(s)	56, 673
Hpy8I	GTNNAC	2 cut(s)	256, 295
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	7 cut(s)	165, 350, 421, 456, 555, 647, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	2 cut(s)	101, 601
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	7 cut(s)	124, 165, 245, 328, 343, 559, 768
LmnI	GCTCC	3 cut(s)	97, 394, 621
Lsp1109I	GCAGC	3 cut(s)	56, 119, 631
MaeI	CTAG	2 cut(s)	504, 823
MaeIII	GTNAC	2 cut(s)	493, 521
MbiI	CCGCTC	1 cut(s)	308
MboII	GAAGA	2 cut(s)	197, 274
MhlI	GDGCHC	2 cut(s)	94, 480
MluCI	AATT	2 cut(s)	487, 785
MmeI	TCCRAC	2 cut(s)	122, 720
MnlI	CCTC	9 cut(s)	13, 108, 249, 278, 347, 433, 467, 610, 764
MseI	TTAA	3 cut(s)	62, 446, 750
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	2 cut(s)	132, 605
MspI	CCGG	3 cut(s)	112, 170, 276
MspR9I	CCNGG	4 cut(s)	112, 170, 277, 412
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	602
NciI	CCSGG	3 cut(s)	112, 170, 277
NdeI	CATATG	1 cut(s)	663
NlaIII	CATG	7 cut(s)	124, 165, 245, 328, 343, 559, 768
NlaIV	GGNNCC	3 cut(s)	174, 390, 726
NmuCI	GTSAC	1 cut(s)	521
NspI	RCATGY	2 cut(s)	165, 768
PfeI	GAWTC	2 cut(s)	184, 202
PkrI	GCNGC	3 cut(s)	71, 134, 646
PsiI	TTATAA	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	410
PspFI	CCCAGC	2 cut(s)	135, 176
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	3 cut(s)	174, 390, 726
PspPI	GGNCC	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	135
PvuII	CAGCTG	2 cut(s)	132, 605
RseI	CAYNNNNRTG	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	62, 446, 750
SatI	GCNGC	3 cut(s)	70, 133, 645
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	4 cut(s)	112, 170, 277, 412
SduI	GDGCHC	2 cut(s)	94, 480
SfcI	CTRYAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	2 cut(s)	353, 569
SmoI	CTYRAG	2 cut(s)	353, 569
Sse9I	AATT	2 cut(s)	487, 785
SsiI	CCGC	3 cut(s)	17, 306, 560
SspMI	CTAG	2 cut(s)	504, 823
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	4 cut(s)	110, 168, 275, 410
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	487, 785
TfiI	GAWTC	2 cut(s)	184, 202
Tru1I	TTAA	3 cut(s)	62, 446, 750
Tru9I	TTAA	3 cut(s)	62, 446, 750
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	3 cut(s)	69, 132, 644
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	406
XapI	RAATTY	2 cut(s)	487, 785
XceI	RCATGY	2 cut(s)	165, 768
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	2 cut(s)	504, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.