Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

22547487 .. 22548849

Gene Structure 1363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGTACGAAGACTGGATTGCTTGATCTTGAAAGGCACTTTGCCTTCTATGGAGCATATCGCAGCAACCCTGTTAACATTTTGCTACACGCTATGTTTGTACGGCCGTTCCTCTTCATTGTTCTTGTTCTGTTTCACTTCGCCCCTTCTCTCTACAATCTCCCATCTGAGTTCAACAATCATGGCTTTGTGTTCAATTTTCGGGTTTTCCTTGTCATGGGAGCTTGCGATGGCTGTTCAGTTATTCGGCTGGACCGGTCACTGGGAAATTTGAGAAAAGAGCACCAGCTTTTATGGACAACCTTGCTCAAAGCCCTTCTAATGGGGCCTTGCTTTGTTTTGCTTGTGGTTCTTCAATCAGCTTCTGGGTATGAGCCTTATCCTGGGTTTCATGCAAGTGTGAAAGAGAAGATTGAAGCTGATATCAAAGAGGGGAAGGAAAATTGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF962

Protein Analysis

151

Amino Acids

17.01

Weight (kDa)

8.38

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	268
AfaI	GTAC	2 cut(s)	7, 102
AfiI	CCNNNNNNNGG	4 cut(s)	217, 262, 322, 383
AgeI	ACCGGT	1 cut(s)	255
AgsI	TTSAA	5 cut(s)	32, 175, 196, 356, 416
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	4 cut(s)	224, 289, 362, 419
AluI	AGCT	4 cut(s)	224, 289, 362, 419
Alw21I	GWGCWC	1 cut(s)	285
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	2 cut(s)	104, 326
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	268
AsiGI	ACCGGT	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	253, 326
AvaII	GGWCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	2 cut(s)	172, 224
BceAI	ACGGC	2 cut(s)	91, 119
BciT130I	CCWGG	1 cut(s)	384
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	253, 326
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	383
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 262, 322, 383
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	2 cut(s)	19, 267
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	383
BseLI	CCNNNNNNNGG	4 cut(s)	217, 262, 322, 383
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	19, 267
BseX3I	CGGCCG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	106, 328
BshTI	ACCGGT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	4 cut(s)	217, 262, 322, 383
BsnI	GGCC	2 cut(s)	106, 328
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	106, 328
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	19, 267
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMCI	CGRYCG	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	17
BstZI	CGGCCG	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	106, 328
BtgZI	GCGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	253, 326
Csp6I	GTAC	2 cut(s)	6, 101
CspAI	ACCGGT	1 cut(s)	255
CviAII	CATG	3 cut(s)	182, 217, 392
CviQI	GTAC	2 cut(s)	6, 101
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	104
EagI	CGGCCG	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	253
Eco52I	CGGCCG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	424
FaeI	CATG	3 cut(s)	185, 220, 395
FatI	CATG	3 cut(s)	181, 216, 391
Fnu4HI	GCNGC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	106, 328
HapII	CCGG	1 cut(s)	256
Hin1II	CATG	3 cut(s)	185, 220, 395
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	55, 156, 326, 430
HpyCH4V	TGCA	2 cut(s)	395, 447
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	185, 220, 395
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	53, 221
LpnPI	CCDG	8 cut(s)	84, 236, 248, 269, 299, 351, 369, 396
Lsp1109I	GCAGC	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	4 cut(s)	22, 106, 344, 421
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	196, 268, 442
MnlI	CCTC	2 cut(s)	122, 424
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	185, 220, 395
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	258
PinAI	ACCGGT	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	253, 326
PstNI	CAGNNNCTG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	7, 102
RsaNI	GTAC	2 cut(s)	6, 101
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	2 cut(s)	253, 326
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	5 cut(s)	226, 291, 305, 364, 421
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	396
Sse9I	AATT	3 cut(s)	196, 268, 442
StyD4I	CCNGG	1 cut(s)	382
TasI	AATT	3 cut(s)	196, 268, 442
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	106, 380
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.