Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

41833519 .. 41834148

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTCCACACCCATCTCCTCAAAACCTGGTTCTTCTCCGACGTCTACGCAGCTACCGCTCTCACGAACGCTTCCATGAAGCTCAACCTCATGGACGATAAACTCAAGGTGTTCGACAAAATGCCTCACCGAAACTTGGTTCCAGTAAACACTGTGATTTCCGGGTTGTTGCACAACGAACATTGCAGAGAGGCTTTAAAGGTGTTCAAGAGCGTTGTTTTTGGAGGGCACGGGTTGAATTCGGTTACTATAGCTAGTGTGTGTTCAGCATGTGACAATGCGAAGCATGGGATGGGAATGGATTGTGTGGTGGTGAAGCTCGGGGTTGAAAGTGATGTTTATGTTGCTACCTCAGCTTTGTTTAAACATATGCCTGTCAAGAATGTGGTGAGCTATAATGCTTTTATAACAGGGCTTTTGCATAATGGGGTTCCAATGGTGATGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGTTGAAAATCTGAATTCAGTGACATTGGTTTCGGCTCTTTCTGCTTGTGGTAGTGTTTTGTATCTCCGATTTGGCAGGCAGGTGCATGGTTTGATCATGAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

194

Amino Acids

21.31

Weight (kDa)

9.18

Isoelectric Point (pI)

22.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AarI	CACCTGC	1 cut(s)	547
AatII	GACGTC	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	547
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	238, 490
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	208, 238, 329, 482
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	6 cut(s)	53, 82, 254, 319, 356, 393
AluI	AGCT	6 cut(s)	53, 82, 254, 319, 356, 393
Ama87I	CYCGRG	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	238, 490
ArsI	GACNNNNNNTTYG	2 cut(s)	490, 522
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	4 cut(s)	119, 325, 400, 451
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	21, 286
BciT130I	CCWGG	1 cut(s)	28
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	28, 163
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	141, 432
BmrFI	CCNGG	2 cut(s)	28, 163
Bpu10I	CCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	297, 454
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	1 cut(s)	8
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	570
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	141, 432
BspMI	ACCTGC	1 cut(s)	547
BsrBI	CCGCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	570
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	297, 454
BstKTI	GATC	1 cut(s)	573
BstMBI	GATC	1 cut(s)	570
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 353, 518
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	2 cut(s)	273, 474
BstSCI	CCNGG	2 cut(s)	26, 161
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	297, 454
BtsIMutI	CAGTG	2 cut(s)	150, 501
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	554
CciI	TCATGA	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	26
CviAII	CATG	7 cut(s)	76, 91, 270, 287, 471, 563, 574
CviJI	RGCY	9 cut(s)	53, 82, 194, 254, 319, 356, 393, 415, 512
CviKI_1	RGCY	9 cut(s)	53, 82, 194, 254, 319, 356, 393, 415, 512
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
DraI	TTTAAA	2 cut(s)	198, 364
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	320
EcoRI	GAATTC	2 cut(s)	238, 490
EcoRII	CCWGG	1 cut(s)	26
FaeI	CATG	7 cut(s)	79, 94, 273, 290, 474, 566, 577
FatI	CATG	7 cut(s)	75, 90, 269, 286, 470, 562, 573
FauNDI	CATATG	1 cut(s)	369
FbaI	TGATCA	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	304, 461
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	7 cut(s)	79, 94, 273, 290, 474, 566, 577
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	4 cut(s)	119, 325, 400, 451
Hpy166II	GTNNAC	3 cut(s)	7, 46, 148
Hpy188I	TCNGA	3 cut(s)	40, 489, 545
Hpy188III	TCNNGA	4 cut(s)	64, 208, 379, 574
Hpy8I	GTNNAC	3 cut(s)	7, 46, 148
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	172, 186, 421, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 353, 518
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	7 cut(s)	79, 94, 273, 290, 474, 566, 577
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	1 cut(s)	570
LpnPI	CCDG	8 cut(s)	13, 40, 156, 175, 387, 396, 538, 542
Lsp1109I	GCAGC	1 cut(s)	62
MabI	ACCWGGT	1 cut(s)	26
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	244, 272, 496
MalI	GATC	1 cut(s)	572
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	1 cut(s)	570
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	238, 490
MmeI	TCCRAC	2 cut(s)	63, 426
MnlI	CCTC	6 cut(s)	29, 98, 135, 184, 218, 361
MseI	TTAA	3 cut(s)	197, 363, 456
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	28, 163
MssI	GTTTAAAC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	56, 353, 518
NciI	CCSGG	1 cut(s)	163
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	1 cut(s)	570
NlaIII	CATG	7 cut(s)	79, 94, 273, 290, 474, 566, 577
NlaIV	GGNNCC	2 cut(s)	141, 432
NmuCI	GTSAC	2 cut(s)	272, 496
NspI	RCATGY	2 cut(s)	273, 474
PagI	TCATGA	1 cut(s)	573
PaqCI	CACCTGC	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	52
PmeI	GTTTAAAC	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	141, 432
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	197, 363, 456
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	570
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	28, 163
SduI	GDGCHC	1 cut(s)	231
SexAI	ACCWGGT	1 cut(s)	26
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	238, 490
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	26, 161
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	238, 490
Tru1I	TTAA	3 cut(s)	197, 363, 456
Tru9I	TTAA	3 cut(s)	197, 363, 456
TscAI	CASTG	2 cut(s)	157, 501
TseFI	GTSAC	2 cut(s)	272, 496
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	272, 496
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	157, 501
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	238, 490
XceI	RCATGY	2 cut(s)	273, 474
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.