Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

14937427 .. 14938127

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30074

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTCCACACGCATCTCCTCAAAACTGGGTTCTTCTCCGACGTCTACGCAGCCACCATTCTCATGGACGCTTCCATGAAGCTCAACCTCATGGACAATGCACTCAAGGTGTTCGACGAAATGCCTCACCGAAACTTGGCTCCCGTAAACACTGTGATTTCAGGGTTGTTGCATAATGGACATCGCAGAGAGGCTTTAAAGGTGTGCAAGAGCGTTGGTTTTGGAGGGCTCAGATTGAATTTGGTTACTATAGCTAGTGTGTTTTCGGCGTGTGACAATGTGAAGCAGGGGATGGGAATGGATTGCGTGGCGATGAAGCTCGGGGTTGAGAGTGATAATGGGGTTCCAAGTGTGGTGTTGGATGTGCTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGGTTTCGGTGCATGGTTTGATCATGAAAGATGATGGTATCGGCGTTGGAGTTCGGATGCGGTGGAGGAGGGCGTGTGTTGGATCGATTTGGCTTTTAGGCTTGGGAGATCTGAGAGAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

179

Amino Acids

19.52

Weight (kDa)

9.27

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	475
AclWI	GGATC	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	238, 403
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	3 cut(s)	82, 254, 319
AluI	AGCT	3 cut(s)	82, 254, 319
AlwI	GGATC	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	238, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	119, 404
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	286, 443
BclI	TGATCA	1 cut(s)	435
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	368
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	141, 345
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	22, 462
BmuI	ACTGGG	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	31
BseCI	ATCGAT	1 cut(s)	500
BseGI	GGATG	3 cut(s)	297, 367, 477
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	244, 518
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	8, 496
BseXI	GCAGC	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	435, 497, 523
BspACI	CCGC	1 cut(s)	475
BspCNI	CTCAG	2 cut(s)	243, 519
BspDI	ATCGAT	1 cut(s)	500
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	141, 345
BspPI	GGATC	1 cut(s)	505
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	435, 497, 523
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	368
BstDEI	CTNAG	2 cut(s)	230, 527
BstF5I	GGATG	3 cut(s)	297, 367, 477
BstKTI	GATC	3 cut(s)	438, 500, 526
BstMBI	GATC	3 cut(s)	435, 497, 523
BstNSI	RCATGY	1 cut(s)	387
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	523
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	523
Bsu15I	ATCGAT	1 cut(s)	500
BsuTUI	ATCGAT	1 cut(s)	500
BtgZI	GCGATG	2 cut(s)	167, 326
BtsCI	GGATG	3 cut(s)	297, 367, 477
BtsIMutI	CAGTG	2 cut(s)	150, 414
CciI	TCATGA	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	500
CseI	GACGC	1 cut(s)	77
CviAII	CATG	6 cut(s)	64, 76, 91, 384, 428, 439
CviJI	RGCY	9 cut(s)	53, 82, 140, 194, 229, 254, 319, 508, 516
CviKI_1	RGCY	9 cut(s)	53, 82, 140, 194, 229, 254, 319, 508, 516
DdeI	CTNAG	2 cut(s)	230, 527
DpnI	GATC	3 cut(s)	437, 499, 525
DpnII	GATC	3 cut(s)	435, 497, 523
DraI	TTTAAA	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	6 cut(s)	67, 79, 94, 387, 431, 442
FaiI	YATR	8 cut(s)	65, 77, 92, 174, 251, 385, 429, 440
FatI	CATG	6 cut(s)	63, 75, 90, 383, 427, 438
FbaI	TGATCA	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	3 cut(s)	304, 374, 484
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	51
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	6 cut(s)	67, 79, 94, 387, 431, 442
HphI	GGTGA	2 cut(s)	119, 404
Hpy166II	GTNNAC	3 cut(s)	7, 46, 148
Hpy188I	TCNGA	5 cut(s)	40, 233, 402, 471, 528
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	3 cut(s)	7, 46, 148
Hpy99I	CGWCG	2 cut(s)	44, 119
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	101, 172, 207, 427
HpyF3I	CTNAG	2 cut(s)	230, 527
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	6 cut(s)	67, 79, 94, 387, 431, 442
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	435, 497, 523
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	12, 147, 272
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	22, 462
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	244, 272, 409
MalI	GATC	3 cut(s)	437, 499, 525
MboI	GATC	3 cut(s)	435, 497, 523
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	238, 403
MmeI	TCCRAC	4 cut(s)	63, 339, 442, 475
MnlI	CCTC	9 cut(s)	29, 98, 135, 184, 218, 383, 474, 477, 528
MseI	TTAA	2 cut(s)	197, 369
MslI	CAYNNNNRTG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	368
NdeII	GATC	3 cut(s)	435, 497, 523
NlaIII	CATG	6 cut(s)	67, 79, 94, 387, 431, 442
NlaIV	GGNNCC	2 cut(s)	141, 345
NmuCI	GTSAC	2 cut(s)	272, 409
NspI	RCATGY	1 cut(s)	387
PagI	TCATGA	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	141, 345
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	197, 369
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	435, 497, 523
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	45, 84, 90, 111, 204, 256, 321, 394, 539
SfaNI	GCATC	2 cut(s)	22, 462
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	2 cut(s)	104, 368
SmoI	CTYRAG	2 cut(s)	104, 368
Sse9I	AATT	2 cut(s)	238, 403
SsiI	CCGC	1 cut(s)	475
SspMI	CTAG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	114, 500
TasI	AATT	2 cut(s)	238, 403
Tru1I	TTAA	2 cut(s)	197, 369
Tru9I	TTAA	2 cut(s)	197, 369
TscAI	CASTG	2 cut(s)	157, 414
TseFI	GTSAC	2 cut(s)	272, 409
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	272, 409
TspDTI	ATGAA	3 cut(s)	92, 329, 455
TspRI	CASTG	2 cut(s)	157, 414
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	238, 403
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.