Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

62918047 .. 62918556

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTCCACACCCATCTCTTGAAAACTAGGTTCTTCTCCGATGTCTACGCTGTCACCGCTCTCACGGACACTTCCATGAAGCTCAACCTCATGGACGATGCACTTAAGGTTTTCAACGAAATGCCTCACCGAAACTTGGCTCCTGTAAACATTGTGATTTCCAGGTTGTTGCATAATGGACATCGCATAAAGGCTTTAAAGGTGTGCAAGAGCGTTGGTTTTGGAAGGCTTGGGTTGAATTCGGTTACTATAGCTAGTGTGTTTTCGGCATGTGATAATGCGAAGCAGGGGATGGGAATGGATTGCGTGGCGGTGAAGCTCGGGGTTGTGAGTGATGTTTATGTTGCTACCTCAGCTGTGAGTATGTATTGGAGCTGTGGGGAGTTGGTTTCTGCTGCAAAGTTGTTTGAACATATGCCTGTCAAGAATGTGGTGAGCTATAATGCTTTTATAACAGGGCTTTTGCAGAATGGGGTTCCAAGGGTAGTGTTGGATGTGTTTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

170

Amino Acids

18.48

Weight (kDa)

9.39

Isoelectric Point (pI)

22.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	2 cut(s)	57, 311
AcsI	RAATTY	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflII	CTTAAG	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	22, 115, 238, 410
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	6 cut(s)	82, 254, 319, 356, 375, 438
AluI	AGCT	6 cut(s)	82, 254, 319, 356, 375, 438
Ama87I	CYCGRG	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	46, 119, 325, 445
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	2 cut(s)	21, 286
BciT130I	CCWGG	1 cut(s)	163
BfaI	CTAG	2 cut(s)	27, 255
BfmI	CTRYAG	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	141, 477
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	2 cut(s)	297, 499
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	320
BspACI	CCGC	2 cut(s)	57, 311
BspCNI	CTCAG	1 cut(s)	365
BspLI	GGNNCC	2 cut(s)	141, 477
BspTI	CTTAAG	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	297, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 353
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	382
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	297, 499
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	3 cut(s)	76, 91, 270
DdeI	CTNAG	1 cut(s)	352
DraI	TTTAAA	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	3 cut(s)	79, 94, 273
FatI	CATG	3 cut(s)	75, 90, 269
FauNDI	CATATG	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	304, 506
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	27, 255
GluI	GCNGC	1 cut(s)	396
Hin1II	CATG	3 cut(s)	79, 94, 273
HphI	GGTGA	4 cut(s)	46, 119, 325, 445
Hpy166II	GTNNAC	3 cut(s)	7, 46, 148
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	19, 424
Hpy8I	GTNNAC	3 cut(s)	7, 46, 148
HpyAV	CCTTC	1 cut(s)	219
HpyCH4V	TGCA	5 cut(s)	101, 172, 207, 398, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 353
HpyF3I	CTNAG	1 cut(s)	352
Hsp92II	CATG	3 cut(s)	79, 94, 273
LmnI	GCTCC	2 cut(s)	145, 372
LpnPI	CCDG	6 cut(s)	148, 156, 175, 272, 432, 441
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	27, 255
MaeIII	GTNAC	2 cut(s)	52, 244
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	3 cut(s)	98, 135, 361
MseI	TTAA	3 cut(s)	105, 197, 501
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	56, 353
NdeI	CATATG	1 cut(s)	414
NlaIII	CATG	3 cut(s)	79, 94, 273
NlaIV	GGNNCC	2 cut(s)	141, 477
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	397
PsiI	TTATAA	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	141, 477
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	105, 197, 501
SatI	GCNGC	1 cut(s)	396
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	2 cut(s)	57, 311
SspMI	CTAG	2 cut(s)	27, 255
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	479
TasI	AATT	1 cut(s)	238
Tru1I	TTAA	3 cut(s)	105, 197, 501
Tru9I	TTAA	3 cut(s)	105, 197, 501
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	2 cut(s)	27, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.