Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8052728.1

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 562

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8052728.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 562 bp

ccactccgcttcttttccccctcacaaattcacattccctccgcttctcaaagcctgtgccaagctccgatcagcccctcaagcccaaatggtccacacgcatctcctcaaaaccgggttcttctccgacgtctactcagccaccgctctcaccgacgcttacatgaagctcaatctcatggacgatgcgctcaaggtgttcgacgaaatgcctgaccgaaacttggcttcggtaaacgctgtgatttccgggctgttgcataatggacatcgcagagaggctttaaaggtgttcaagagcgttggttttggagggttcgggttgaattcggttactatagccagtgtgctttcgccgtgtgacaatgcgaaggaggggatgggaatgcattgcgctgcggtgaagctcggggttgagagtgatgtttatgttgctacatcagctgtgagtatgtattcgagctgtggagagttggtttctgctgcaaagttgtttgaagatatgcctgtcaagaatgtggtgagctataatgcttttataacagggcttatgcagaatggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

187

Amino Acids

20.05

Weight (kDa)

7.86

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	540
AatII	GACGTC	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	4 cut(s)	7, 42, 145, 399
AcsI	RAATTY	2 cut(s)	27, 326
AcyI	GRCGYC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	296, 326, 498
AluBI	AGCT	6 cut(s)	65, 170, 407, 444, 463, 526
AluI	AGCT	6 cut(s)	65, 170, 407, 444, 463, 526
Ama87I	CYCGRG	1 cut(s)	408
ApeKI	GCWGC	2 cut(s)	396, 483
ApoI	RAATTY	2 cut(s)	27, 326
AspLEI	GCGC	2 cut(s)	191, 396
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	2 cut(s)	116, 251
AsuHPI	GGTGA	3 cut(s)	143, 413, 533
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	383, 470
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	341
BcnI	CCSGG	2 cut(s)	116, 251
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	2 cut(s)	397, 484
BlsI	GCNGC	2 cut(s)	398, 485
Bme1390I	CCNGG	2 cut(s)	116, 251
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	116, 251
BmsI	GCATC	2 cut(s)	110, 176
BpuEI	CTTGAG	2 cut(s)	64, 177
BpuMI	CCSGG	2 cut(s)	116, 251
BsaHI	GRCGYC	1 cut(s)	130
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 460, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	389
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	383, 470
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	2 cut(s)	115, 250
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	391
BsoBI	CYCGRG	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	4 cut(s)	7, 42, 145, 399
BspCNI	CTCAG	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	343
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	2 cut(s)	191, 396
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 441
BstSCI	CCNGG	2 cut(s)	114, 249
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	383, 470
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	350
CfoI	GCGC	2 cut(s)	191, 396
Cfr13I	GGNCC	1 cut(s)	92
CseI	GACGC	1 cut(s)	165
CviAII	CATG	2 cut(s)	164, 179
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DraI	TTTAAA	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	391
FaeI	CATG	2 cut(s)	167, 182
FatI	CATG	2 cut(s)	163, 178
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	397, 484
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	397, 484
GlaI	GCGC	2 cut(s)	190, 395
GluI	GCNGC	2 cut(s)	397, 484
HapII	CCGG	2 cut(s)	115, 250
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	2 cut(s)	191, 396
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	167, 182
Hin6I	GCGC	2 cut(s)	189, 394
HinP1I	GCGC	2 cut(s)	189, 394
HpaII	CCGG	2 cut(s)	115, 250
HphI	GGTGA	3 cut(s)	143, 413, 533
Hpy166II	GTNNAC	3 cut(s)	95, 134, 236
Hpy188I	TCNGA	2 cut(s)	69, 128
Hpy188III	TCNNGA	2 cut(s)	296, 512
Hpy8I	GTNNAC	3 cut(s)	95, 134, 236
Hpy99I	CGWCG	3 cut(s)	132, 159, 207
HpyAV	CCTTC	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	4 cut(s)	260, 389, 486, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 441
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	130
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	2 cut(s)	167, 182
HspAI	GCGC	2 cut(s)	189, 394
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	68, 128, 226, 263, 356, 520, 529
Lsp1109I	GCAGC	2 cut(s)	383, 470
LweI	GCATC	2 cut(s)	110, 176
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	2 cut(s)	332, 360
MalI	GATC	1 cut(s)	71
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	113, 510
MluCI	AATT	2 cut(s)	27, 326
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	31, 49, 88, 117, 272, 306, 368
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	444
MspI	CCGG	2 cut(s)	115, 250
MspR9I	CCNGG	2 cut(s)	116, 251
Mva1269I	GAATGC	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	81, 441
NciI	CCSGG	2 cut(s)	116, 251
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	167, 182
NmuCI	GTSAC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	391
PctI	GAATGC	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	398, 485
PsiI	TTATAA	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	397, 484
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	116, 251
SetI	ASST	9 cut(s)	67, 133, 172, 199, 292, 409, 446, 465, 528
SfaNI	GCATC	2 cut(s)	110, 176
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	79, 192
SmoI	CTYRAG	2 cut(s)	79, 192
Sse9I	AATT	2 cut(s)	27, 326
SsiI	CCGC	4 cut(s)	7, 42, 145, 399
StyD4I	CCNGG	2 cut(s)	114, 249
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	202, 459
TaqII	GACCGA	1 cut(s)	232
TasI	AATT	2 cut(s)	27, 326
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	2 cut(s)	396, 483
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	2 cut(s)	27, 326
XmiI	GTMKAC	1 cut(s)	133
ZraI	GACGTC	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.