Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

54316452 .. 54323732

Gene Structure 7281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG389800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGAAGCGCGAAATAGGCAGACTAGTCGCTGATGGCTTATACAGAGAAGCCCTATGCTTATATACTCAACACCACTCCGCTTCTTTCCCCCCTCACAAATTCACATTCCCTCCACTTCTCAAAGCCTCTGCCAAGCTCCGATCAGCCCCTCAAGCCCAAATGGTCCACACCCATCTCCTCAAAACCGGGTTCTTCTCCGACGTCTACTCAGCCACCGCTCTCACCGACGCTTACATGAAGCTCAATCTCATGGACGATGCGCTCAAGGTGTTCGACGAAATGCCTGACCGAAACTTGGCTTCGGTAAACGCTGTGATTTCCGGGCTGTTGCATAATGGACATCGCAGAGAGGCTTTAAAGGTGTTCAAGAGCGTTGGTTTTGGAGGGTTCGGGTTGAATTCGGTTACTATAGCCAGTGTGCTTTCGGCGTGTGACAATGCGAAGGAGGGGATGGGAATGCATTGCGCTGCGGTGAAGCTCGGGGTTGAGAGTGATGTTTATGTTGCTACATCAGCTGTGAGTATGTATTCGAGCTGTGGAGAGTTGGTTTCTGCTGCAAAGTTGTTTGAAGATATGCCTGTCAAGAATGTGGTGAGCTATAATGCTTTTATAACAGGGCTTATGCAGAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGGTTTCGGTTCTCTCTGCTTGTGCTAGTGTTTTGTATCTCCGATTTGGCAGGCAGGTTCATGGTTTGATCATGAAAATTGAGAATGGGATTGATGCTATGACCGGAACAGCGCTTGTGGACATGTATTCCAAGTGTGGGTGTTGGCAGCTCGCGTACCAAGTTTTCGAAGGACTAAATGAAACAAGGACCTTGTTTATATGGAATGCCATGATTGCAGGAATGATGTTGAATGCGCAGTGGGAGATTGCTGTTGAGCTTTTCGAACAGCTAGAATCTGAAGGGTTTAAGCCTGATTCAGTGACTTGGAATTCAATGATCAGCGGGTTTTCACAACTAGGGATGGGAAACGAAGCTTTCAAGTATTTTAAGAGAATGCAATCGACTGGTGTAGCTCCGAGTTTGAAATCTGTCACTAGTCTTTTGCAAGCCTGTGCAGATTCATCTGCTCTGCAATGTGGACAAGAGGTTCATGGGCATGCAATTAGGACTGATATTAGCAGTGATCTGTTCTTTTCAACTGCTCTCATTGACATGTACATGAAATGTGGGCAGTCTTCTTGGGCAAGAAGAGTTTTTGATTCCTTTCATGTAAAACCTGACGATCCAGCATTTTGGAATGCAACAATATCTGGGTATGGAAGAGAAGGAGAGAATGAATCTGCATTTCGAATATTTGACCAGATGCTCGAAGAAAAAGTACAACCAAATGCAGCAACTTTTATAAGTCTTCTATCTATGTGTAGTCACAGTGGTTTAATTGACAAGGGATGGCAAATTTTTAGGATGATGGATAGAGATTTTGGAATAAAACCAGATCCGAAACATTATGGTTGTATGATCGACCTTTTAGGTAGATCAGGCAGGTTGGATGAAGCCCGGGAATTAACACACGAGTTATCAGAGCCTTCTGGATCAGTTTTTGCTTCTTTGCTAGGTGCTTGCGAGTCCCATTTAAATCTAGAACTGGGGAAAGAAATGGCCATAAAACTTTCAGAATTAGAGCCAGAGAACCCTACACCTTTCCTGATACTGTCCAAGATATATGCTGGGCTTGGGAGGTGGAAGGATGCAGAAATCATTAGGGGAATGATGGATGATCAAAAGTCAATAAAGCTCCCTGGCTTTAGCTTATTACAATTGCATGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

619

Amino Acids

68.4

Weight (kDa)

6.21

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 244	3.8e-08	PPR repeat family
PPR_2	PF13041	301 - 346	4.6e-11	PPR repeat family
PPR_long	PF17177	316 - 429	3.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	322 - 382	3.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	330 - 361	9.1e-07	PPR repeat
PPR_2	PF13041	333 - 381	8e-12	PPR repeat family
PPR	PF01535	336 - 365	7.2e-09	PPR repeat
PPR_2	PF13041	440 - 484	2.5e-10	PPR repeat family
E_motif	PF20431	553 - 614	1.3e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	611, 1430
AatII	GACGTC	1 cut(s)	204
Acc16I	TGCGCA	1 cut(s)	942
Acc36I	ACCTGC	2 cut(s)	751, 1560
AccBSI	CCGCTC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	2 cut(s)	9, 860
AciI	CCGC	4 cut(s)	78, 216, 470, 1029
AclWI	GGATC	3 cut(s)	1304, 1517, 1627
AcoI	YGGCCR	1 cut(s)	1686
AcsI	RAATTY	5 cut(s)	98, 397, 694, 1015, 1482
AcuI	CTGAAG	1 cut(s)	1005
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	3 cut(s)	863, 1244, 1407
AfeI	AGCGCT	1 cut(s)	819
AfiI	CCNNNNNNNGG	2 cut(s)	295, 843
AflIII	ACRYGT	2 cut(s)	828, 1239
AgsI	TTSAA	8 cut(s)	367, 397, 569, 937, 1020, 1066, 1111, 1224
AhlI	ACTAGT	2 cut(s)	22, 1121
AjnI	CCWGG	1 cut(s)	1825
AloI	GAACNNNNNNTCC	2 cut(s)	1158, 1190
AlwI	GGATC	3 cut(s)	1304, 1517, 1627
Ama87I	CYCGRG	2 cut(s)	479, 1584
Aor51HI	AGCGCT	1 cut(s)	819
AoxI	GGCC	1 cut(s)	1686
ApeKI	GCWGC	4 cut(s)	467, 554, 853, 1418
ApoI	RAATTY	5 cut(s)	98, 397, 694, 1015, 1482
ArsI	GACNNNNNNTTYG	2 cut(s)	694, 726
AspLEI	GCGC	5 cut(s)	9, 262, 467, 820, 943
AspS9I	GGNCC	2 cut(s)	163, 894
AsuC2I	CCSGG	4 cut(s)	187, 322, 1585, 1586
AsuHPI	GGTGA	4 cut(s)	214, 484, 604, 695
AsuII	TTCGAA	3 cut(s)	873, 969, 1375
AvaI	CYCGRG	2 cut(s)	479, 1584
AvaII	GGWCC	2 cut(s)	163, 894
BalI	TGGCCA	1 cut(s)	1688
BarI	GAAGNNNNNNTAC	2 cut(s)	1389, 1421
BauI	CACGAG	1 cut(s)	1598
BbsI	GAAGAC	2 cut(s)	1254, 1427
BbvI	GCAGC	4 cut(s)	454, 541, 865, 1430
BccI	CCATC	7 cut(s)	26, 180, 445, 1042, 1470, 1489, 1792
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	1827
BclI	TGATCA	3 cut(s)	774, 1023, 1804
BcnI	CCSGG	4 cut(s)	187, 322, 1585, 1586
BcuI	ACTAGT	2 cut(s)	22, 1121
BfaI	CTAG	7 cut(s)	23, 732, 977, 1043, 1122, 1640, 1667
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	821
BfuAI	ACCTGC	2 cut(s)	751, 1560
BisI	GCNGC	4 cut(s)	468, 555, 854, 1419
BlsI	GCNGC	4 cut(s)	469, 556, 855, 1420
Bme1390I	CCNGG	5 cut(s)	187, 322, 1585, 1586, 1827
Bme18I	GGWCC	2 cut(s)	163, 894
BmeT110I	CYCGRG	2 cut(s)	479, 1584
BmgT120I	GGNCC	2 cut(s)	163, 894
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	5 cut(s)	187, 322, 1585, 1586, 1827
BmrI	ACTGGG	1 cut(s)	1682
BmsI	GCATC	4 cut(s)	247, 790, 1380, 1765
BmuI	ACTGGG	1 cut(s)	1682
BpiI	GAAGAC	2 cut(s)	1254, 1427
Bpu14I	TTCGAA	3 cut(s)	873, 969, 1375
BpuEI	CTTGAG	2 cut(s)	135, 248
BpuMI	CCSGG	4 cut(s)	187, 322, 1585, 1586
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	638, 1584, 1825
BsaWI	WCCGGW	1 cut(s)	809
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 531, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 843
Bse1I	ACTGG	3 cut(s)	414, 1096, 1677
Bse3DI	GCAATG	2 cut(s)	460, 1166
BseBI	CCWGG	1 cut(s)	1827
BseDI	CCNNGG	3 cut(s)	638, 1584, 1825
BseGI	GGATG	8 cut(s)	456, 658, 1053, 1481, 1497, 1582, 1780, 1807
BseLI	CCNNNNNNNGG	2 cut(s)	295, 843
BseMI	GCAATG	2 cut(s)	460, 1166
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	3 cut(s)	414, 1096, 1677
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	454, 541, 865, 1430
BseYI	CCCAGC	1 cut(s)	1754
BsgI	GTGCAG	1 cut(s)	1161
Bsh1236I	CGCG	2 cut(s)	9, 860
BshFI	GGCC	1 cut(s)	1688
BsiHKCI	CYCGRG	2 cut(s)	479, 1584
BsiSI	CCGG	4 cut(s)	186, 321, 810, 1585
BslFI	GGGAC	1 cut(s)	1639
BslI	CCNNNNNNNGG	2 cut(s)	295, 843
BsmFI	GGGAC	1 cut(s)	1639
BsmI	GAATGC	5 cut(s)	462, 916, 943, 1086, 1330
BsnI	GGCC	1 cut(s)	1688
BsoBI	CYCGRG	2 cut(s)	479, 1584
Bsp119I	TTCGAA	3 cut(s)	873, 969, 1375
Bsp1407I	TGTACA	1 cut(s)	1242
BspACI	CCGC	4 cut(s)	78, 216, 470, 1029
BspANI	GGCC	1 cut(s)	1688
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	2 cut(s)	9, 860
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	1 cut(s)	636
BspMI	ACCTGC	2 cut(s)	751, 1560
BspPI	GGATC	3 cut(s)	1304, 1517, 1627
BspT104I	TTCGAA	3 cut(s)	873, 969, 1375
BsrBI	CCGCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	460, 1166
BsrGI	TGTACA	1 cut(s)	1242
BsrI	ACTGG	3 cut(s)	414, 1096, 1677
BssECI	CCNNGG	3 cut(s)	638, 1584, 1825
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	1598
BssT1I	CCWWGG	1 cut(s)	638
Bst2BI	CACGAG	1 cut(s)	1598
Bst2UI	CCWGG	1 cut(s)	1827
Bst4CI	ACNGT	2 cut(s)	1457, 1740
Bst6I	CTCTTC	2 cut(s)	1270, 1342
BstACI	GRCGYC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	1242
BstBI	TTCGAA	3 cut(s)	873, 969, 1375
BstC8I	GCNNGC	5 cut(s)	758, 858, 1134, 1185, 1648
BstDEI	CTNAG	1 cut(s)	208
BstF5I	GGATG	8 cut(s)	456, 658, 1053, 1481, 1497, 1582, 1780, 1807
BstFNI	CGCG	2 cut(s)	9, 860
BstH2I	RGCGCY	1 cut(s)	821
BstHHI	GCGC	5 cut(s)	9, 262, 467, 820, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 152, 512, 920
BstNI	CCWGG	1 cut(s)	1827
BstNSI	RCATGY	4 cut(s)	678, 832, 1187, 1243
BstSCI	CCNGG	5 cut(s)	185, 320, 1583, 1584, 1825
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	2 cut(s)	9, 860
BstV1I	GCAGC	4 cut(s)	454, 541, 865, 1430
BstV2I	GAAGAC	2 cut(s)	1254, 1427
BstX2I	RGATCY	1 cut(s)	1522
BstXI	CCANNNNNNTGG	1 cut(s)	1320
BstYI	RGATCY	1 cut(s)	1522
BsuRI	GGCC	1 cut(s)	1688
BtgZI	GCGATG	1 cut(s)	326
BtsCI	GGATG	8 cut(s)	456, 658, 1053, 1481, 1497, 1582, 1780, 1807
BtsI	GCAGTG	2 cut(s)	950, 1213
BtsIMutI	CAGTG	6 cut(s)	421, 705, 950, 1011, 1213, 1462
BveI	ACCTGC	2 cut(s)	751, 1560
Cac8I	GCNNGC	5 cut(s)	758, 858, 1134, 1185, 1648
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	5 cut(s)	9, 262, 467, 820, 943
Cfr13I	GGNCC	2 cut(s)	163, 894
Cfr9I	CCCGGG	1 cut(s)	1584
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	862, 1243, 1406
CviQI	GTAC	3 cut(s)	862, 1243, 1406
DdeI	CTNAG	1 cut(s)	208
DraI	TTTAAA	2 cut(s)	357, 1662
EaeI	YGGCCR	1 cut(s)	1686
Eam1104I	CTCTTC	2 cut(s)	1270, 1342
EarI	CTCTTC	2 cut(s)	1270, 1342
Eco130I	CCWWGG	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	163, 894
Eco47III	AGCGCT	1 cut(s)	819
Eco57I	CTGAAG	1 cut(s)	1005
Eco88I	CYCGRG	2 cut(s)	479, 1584
EcoO109I	RGGNCCY	1 cut(s)	894
EcoRI	GAATTC	3 cut(s)	397, 694, 1015
EcoRII	CCWGG	1 cut(s)	1825
EcoT14I	CCWWGG	1 cut(s)	638
EcoT22I	ATGCAT	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	638
FaqI	GGGAC	1 cut(s)	1639
FauI	CCCGC	1 cut(s)	1022
FbaI	TGATCA	3 cut(s)	774, 1023, 1804
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	468, 555, 854, 1419
FokI	GGATG	8 cut(s)	463, 665, 1060, 1488, 1504, 1589, 1787, 1814
Fsp4HI	GCNGC	4 cut(s)	468, 555, 854, 1419
FspBI	CTAG	7 cut(s)	23, 732, 977, 1043, 1122, 1640, 1667
FspI	TGCGCA	1 cut(s)	942
GlaI	GCGC	5 cut(s)	8, 261, 466, 819, 942
GluI	GCNGC	4 cut(s)	468, 555, 854, 1419
GsaI	CCCAGC	1 cut(s)	1758
HaeII	RGCGCY	1 cut(s)	821
HaeIII	GGCC	1 cut(s)	1688
HapII	CCGG	4 cut(s)	186, 321, 810, 1585
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	5 cut(s)	9, 262, 467, 820, 943
Hin1I	GRCGYC	1 cut(s)	201
Hin6I	GCGC	5 cut(s)	7, 260, 465, 818, 941
HinP1I	GCGC	5 cut(s)	7, 260, 465, 818, 941
HindIII	AAGCTT	1 cut(s)	1059
HinfI	GANTC	6 cut(s)	980, 1001, 1145, 1286, 1364, 1652
HpaII	CCGG	4 cut(s)	186, 321, 810, 1585
HphI	GGTGA	4 cut(s)	214, 484, 604, 695
Hpy166II	GTNNAC	5 cut(s)	166, 205, 307, 826, 1166
Hpy188I	TCNGA	9 cut(s)	140, 199, 693, 749, 985, 1104, 1527, 1609, 1702
Hpy188III	TCNNGA	6 cut(s)	367, 583, 778, 1617, 1667, 1732
Hpy8I	GTNNAC	5 cut(s)	166, 205, 307, 826, 1166
Hpy99I	CGWCG	3 cut(s)	203, 230, 278
HpyAV	CCTTC	6 cut(s)	436, 869, 980, 1346, 1623, 1765
HpyCH4III	ACNGT	2 cut(s)	1457, 1740
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 152, 512, 920
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	201
HspAI	GCGC	5 cut(s)	7, 260, 465, 818, 941
Ksp22I	TGATCA	3 cut(s)	774, 1023, 1804
LmnI	GCTCC	3 cut(s)	141, 1105, 1827
Lsp1109I	GCAGC	4 cut(s)	454, 541, 865, 1430
LweI	GCATC	4 cut(s)	247, 790, 1380, 1765
MaeI	CTAG	7 cut(s)	23, 732, 977, 1043, 1122, 1640, 1667
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	6 cut(s)	403, 431, 700, 1006, 1117, 1451
MbiI	CCGCTC	1 cut(s)	218
MboII	GAAGA	7 cut(s)	184, 581, 1254, 1287, 1359, 1409, 1427
MfeI	CAATTG	1 cut(s)	1844
MflI	RGATCY	1 cut(s)	1522
MlsI	TGGCCA	1 cut(s)	1688
MluNI	TGGCCA	1 cut(s)	1688
MlyI	GAGTC	1 cut(s)	1661
MmeI	TCCRAC	3 cut(s)	222, 630, 1554
Mox20I	TGGCCA	1 cut(s)	1688
Mph1103I	ATGCAT	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	1688
MseI	TTAA	7 cut(s)	356, 660, 993, 1074, 1463, 1592, 1661
MslI	CAYNNNNRTG	3 cut(s)	1182, 1238, 1244
Msp20I	TGGCCA	1 cut(s)	1688
MspA1I	CMGCKG	2 cut(s)	515, 1029
MspI	CCGG	4 cut(s)	186, 321, 810, 1585
MspR9I	CCNGG	5 cut(s)	187, 322, 1585, 1586, 1827
MunI	CAATTG	1 cut(s)	1844
Mva1269I	GAATGC	5 cut(s)	462, 916, 943, 1086, 1330
MvaI	CCWGG	1 cut(s)	1827
MvnI	CGCG	2 cut(s)	9, 860
MwoI	GCNNNNNNNGC	4 cut(s)	15, 152, 512, 920
NciI	CCSGG	4 cut(s)	187, 322, 1585, 1586
NlaIV	GGNNCC	1 cut(s)	636
NmuCI	GTSAC	5 cut(s)	431, 700, 1006, 1117, 1451
NsbI	TGCGCA	1 cut(s)	942
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	4 cut(s)	678, 832, 1187, 1243
NspV	TTCGAA	3 cut(s)	873, 969, 1375
PaeI	GCATGC	1 cut(s)	1187
PagI	TCATGA	1 cut(s)	777
PciI	ACATGT	2 cut(s)	828, 1239
PctI	GAATGC	5 cut(s)	462, 916, 943, 1086, 1330
PfeI	GAWTC	5 cut(s)	980, 1001, 1145, 1286, 1364
PkrI	GCNGC	4 cut(s)	469, 556, 855, 1420
PleI	GAGTC	1 cut(s)	1660
PpsI	GAGTC	1 cut(s)	1660
PpuMI	RGGWCCY	1 cut(s)	894
PscI	ACATGT	2 cut(s)	828, 1239
PsiI	TTATAA	2 cut(s)	611, 1430
Psp5II	RGGWCCY	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	1825
PspFI	CCCAGC	1 cut(s)	1754
PspGI	CCWGG	1 cut(s)	1825
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	2 cut(s)	163, 894
PspPPI	RGGWCCY	1 cut(s)	894
PsuI	RGATCY	1 cut(s)	1522
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	3 cut(s)	863, 1244, 1407
RsaNI	GTAC	3 cut(s)	862, 1243, 1406
RseI	CAYNNNNRTG	3 cut(s)	1182, 1238, 1244
SaqAI	TTAA	7 cut(s)	356, 660, 993, 1074, 1463, 1592, 1661
SatI	GCNGC	4 cut(s)	468, 555, 854, 1419
Sau96I	GGNCC	2 cut(s)	163, 894
SchI	GAGTC	1 cut(s)	1661
ScrFI	CCNGG	5 cut(s)	187, 322, 1585, 1586, 1827
SfaNI	GCATC	4 cut(s)	247, 790, 1380, 1765
SfcI	CTRYAG	1 cut(s)	408
SfuI	TTCGAA	3 cut(s)	873, 969, 1375
SinI	GGWCC	2 cut(s)	163, 894
SmaI	CCCGGG	1 cut(s)	1586
SmiI	ATTTAAAT	1 cut(s)	1662
SmiMI	CAYNNNNRTG	3 cut(s)	1182, 1238, 1244
SmlI	CTYRAG	2 cut(s)	150, 263
SmoI	CTYRAG	2 cut(s)	150, 263
SpeI	ACTAGT	2 cut(s)	22, 1121
SphI	GCATGC	1 cut(s)	1187
SsiI	CCGC	4 cut(s)	78, 216, 470, 1029
SspI	AATATT	1 cut(s)	1380
SspMI	CTAG	7 cut(s)	23, 732, 977, 1043, 1122, 1640, 1667
StyD4I	CCNGG	5 cut(s)	185, 320, 1583, 1584, 1825
StyI	CCWWGG	1 cut(s)	638
SwaI	ATTTAAAT	1 cut(s)	1662
TaaI	ACNGT	2 cut(s)	1457, 1740
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	8 cut(s)	273, 530, 873, 969, 1088, 1375, 1395, 1548
TaqII	GACCGA	1 cut(s)	303
TatI	WGTACW	2 cut(s)	1242, 1405
TfiI	GAWTC	5 cut(s)	980, 1001, 1145, 1286, 1364
Tru1I	TTAA	7 cut(s)	356, 660, 993, 1074, 1463, 1592, 1661
Tru9I	TTAA	7 cut(s)	356, 660, 993, 1074, 1463, 1592, 1661
TscAI	CASTG	6 cut(s)	421, 705, 950, 1011, 1213, 1462
TseFI	GTSAC	5 cut(s)	431, 700, 1006, 1117, 1451
TseI	GCWGC	4 cut(s)	467, 554, 853, 1418
Tsp45I	GTSAC	5 cut(s)	431, 700, 1006, 1117, 1451
TspMI	CCCGGG	1 cut(s)	1584
TspRI	CASTG	6 cut(s)	421, 705, 950, 1011, 1213, 1462
VpaK11BI	GGWCC	2 cut(s)	163, 894
XapI	RAATTY	5 cut(s)	98, 397, 694, 1015, 1482
XbaI	TCTAGA	1 cut(s)	1666
XceI	RCATGY	4 cut(s)	678, 832, 1187, 1243
XmaI	CCCGGG	1 cut(s)	1584
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	7 cut(s)	23, 732, 977, 1043, 1122, 1640, 1667
ZraI	GACGTC	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.