Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012764.1

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

52856 .. 56653

Gene Structure 3798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012764.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atggtccctgcacttccaaattacatcaaactagtccaaaatttgactttgactcaaaacatgacgtcatacactgatgtggaaccgacatggggtcccacctttcagactctgaccctcaatttgaacgaaaagtccaaactgccctacttcttcatattttttttttctttttctttcttcctttccctaattctattccctttcgtcttcttcctttcttccaaccctcttcctactccgatttcttcttcttctcaattcaaaattctcctccagaaccctaatctccaatcaagatcttatgtctcctcttattctgccgccagttacaccaccgccgcgctggagaaaagaccagccccacctagaaggtttcagcgatcacggacaagatcggggcttactctgctcgaggtctcagacctaatggaggtcttgagagtgaaattggggatgaagccgacaacgatgatgatgatgccggggatgggaatcgacgggctttggggtgccgataagggcagcgatgcgacactgggaaggctgaggagaacggcgtcgtttttgttgtcatttgagaccctatgccaagaccactctgcttcttttgcccctcacaaattcacatttcctcctattctcaaagactgtgccaagctcctatcagcccctcaagtccaaatggtccacacccatctcctgaaaaccgggttcttcaccaacatctacactatcaccgctctcacggactcttccatgaagctcaacctcatggacgatgcactcaaggtctcaaggtgttcgacgaaatgcctcactgaaacttggctccttgcgaagcaggggatgggaatggattgtgtggcggtgaagctcagggttaagagtgatgtttatgttgctaccttagctgtgcatggtttgatcatgaaagatgatggtatcggcgttggagttcggatgcgcttcgctgggttacgagggcgtcacccttgcttcgctggtggtatcgatggcagtagcactggcagtcggctcgcgagaagactaggactagaagtacgatcgccgggtttcaacagggttgaaggtttgctccggggaggctttgtaatcgctgggattgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

377

Amino Acids

41.72

Weight (kDa)

9.81

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	743
AccII	CGCG	2 cut(s)	344, 1043
AciI	CCGC	5 cut(s)	324, 339, 342, 741, 869
AcsI	RAATTY	3 cut(s)	40, 267, 623
AcyI	GRCGYC	3 cut(s)	65, 560, 988
AfaI	GTAC	1 cut(s)	1065
AfiI	CCNNNNNNNGG	3 cut(s)	92, 433, 491
AgsI	TTSAA	4 cut(s)	127, 265, 1081, 1091
AhdI	GACNNNNNGTC	1 cut(s)	93
AhlI	ACTAGT	1 cut(s)	31
AleI	CACNNNNGTG	1 cut(s)	77
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	4 cut(s)	661, 766, 877, 914
AluI	AGCT	4 cut(s)	661, 766, 877, 914
Alw26I	GTCTC	4 cut(s)	313, 424, 575, 799
AlwNI	CAGNNNCTG	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	413
ApeKI	GCWGC	1 cut(s)	525
ApoI	RAATTY	3 cut(s)	40, 267, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspLEI	GCGC	2 cut(s)	346, 969
AspS9I	GGNCC	3 cut(s)	4, 95, 688
AsuC2I	CCSGG	4 cut(s)	486, 712, 1074, 1103
AsuHPI	GGTGA	4 cut(s)	712, 730, 883, 983
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	3 cut(s)	4, 95, 688
BanI	GGYRCC	1 cut(s)	512
BbsI	GAAGAC	2 cut(s)	202, 1054
BbvCI	CCTCAGC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	537
BccI	CCATC	5 cut(s)	484, 705, 844, 935, 1010
BceAI	ACGGC	1 cut(s)	573
BcgI	CGANNNNNNTGC	2 cut(s)	1021, 1055
BclI	TGATCA	1 cut(s)	927
BcnI	CCSGG	4 cut(s)	486, 712, 1074, 1103
BcoDI	GTCTC	4 cut(s)	313, 424, 575, 799
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	4 cut(s)	32, 369, 1052, 1058
BglII	AGATCT	1 cut(s)	299
BisI	GCNGC	3 cut(s)	324, 342, 526
BlsI	GCNGC	3 cut(s)	325, 343, 527
Bme1390I	CCNGG	4 cut(s)	486, 712, 1074, 1103
Bme18I	GGWCC	3 cut(s)	4, 95, 688
BmeRI	GACNNNNNGTC	1 cut(s)	93
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	3 cut(s)	4, 95, 688
BmiI	GGNNCC	6 cut(s)	6, 84, 96, 97, 514, 833
BmrFI	CCNGG	4 cut(s)	486, 712, 1074, 1103
BmrI	ACTGGG	1 cut(s)	548
BmsI	GCATC	4 cut(s)	471, 520, 772, 954
BmuI	ACTGGG	1 cut(s)	548
BpiI	GAAGAC	2 cut(s)	202, 1054
BpmI	CTGGAG	2 cut(s)	260, 368
Bpu10I	CCTNAGC	3 cut(s)	548, 878, 910
BpuEI	CTTGAG	4 cut(s)	460, 660, 773, 781
BpuMI	CCSGG	4 cut(s)	486, 712, 1074, 1103
Bsa29I	ATCGAT	1 cut(s)	1014
BsaBI	GATNNNNATC	1 cut(s)	494
BsaHI	GRCGYC	3 cut(s)	65, 560, 988
BsaI	GGTCTC	3 cut(s)	424, 575, 799
BsaJI	CCNNGG	2 cut(s)	485, 1102
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 649, 1098, 1128
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 433, 491
Bse1I	ACTGG	3 cut(s)	327, 543, 1033
Bse8I	GATNNNNATC	1 cut(s)	494
BseCI	ATCGAT	1 cut(s)	1014
BseDI	CCNNGG	2 cut(s)	485, 1102
BseGI	GGATG	4 cut(s)	462, 495, 855, 969
BseJI	GATNNNNATC	1 cut(s)	494
BseLI	CCNNNNNNNGG	3 cut(s)	92, 433, 491
BseMII	CTCAG	3 cut(s)	435, 539, 892
BseNI	ACTGG	3 cut(s)	327, 543, 1033
BseRI	GAGGAG	3 cut(s)	263, 301, 565
BseXI	GCAGC	1 cut(s)	537
BseYI	CCCAGC	2 cut(s)	974, 1121
Bsh1236I	CGCG	2 cut(s)	344, 1043
Bsh1285I	CGRYCG	1 cut(s)	1070
BshNI	GGYRCC	1 cut(s)	512
BshVI	ATCGAT	1 cut(s)	1014
BsiEI	CGRYCG	1 cut(s)	1070
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	4 cut(s)	485, 711, 1073, 1102
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	92, 433, 491
BsmAI	GTCTC	4 cut(s)	313, 424, 575, 799
BsmFI	GGGAC	1 cut(s)	81
Bso31I	GGTCTC	3 cut(s)	424, 575, 799
BsoBI	CYCGRG	1 cut(s)	413
Bsp143I	GATC	5 cut(s)	299, 383, 395, 927, 1067
Bsp68I	TCGCGA	1 cut(s)	1043
BspACI	CCGC	5 cut(s)	324, 339, 342, 741, 869
BspCNI	CTCAG	3 cut(s)	434, 540, 891
BspDI	ATCGAT	1 cut(s)	1014
BspFNI	CGCG	2 cut(s)	344, 1043
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	6 cut(s)	6, 84, 96, 97, 514, 833
BspT107I	GGYRCC	1 cut(s)	512
BspTNI	GGTCTC	3 cut(s)	424, 575, 799
BsrBI	CCGCTC	1 cut(s)	743
BsrI	ACTGG	3 cut(s)	327, 543, 1033
BssECI	CCNNGG	2 cut(s)	485, 1102
BssMI	GATC	5 cut(s)	299, 383, 395, 927, 1067
BssNI	GRCGYC	3 cut(s)	65, 560, 988
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	2 cut(s)	237, 760
BstACI	GRCGYC	3 cut(s)	65, 560, 988
BstC8I	GCNNGC	1 cut(s)	1041
BstDEI	CTNAG	4 cut(s)	421, 548, 878, 910
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	4 cut(s)	462, 495, 855, 969
BstFNI	CGCG	2 cut(s)	344, 1043
BstHHI	GCGC	2 cut(s)	346, 969
BstKTI	GATC	5 cut(s)	302, 386, 398, 930, 1070
BstMAI	GTCTC	4 cut(s)	313, 424, 575, 799
BstMBI	GATC	5 cut(s)	299, 383, 395, 927, 1067
BstMCI	CGRYCG	1 cut(s)	1070
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 611, 911
BstSCI	CCNGG	4 cut(s)	484, 710, 1072, 1101
BstUI	CGCG	2 cut(s)	344, 1043
BstV1I	GCAGC	1 cut(s)	537
BstV2I	GAAGAC	2 cut(s)	202, 1054
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	1014
BsuTUI	ATCGAT	1 cut(s)	1014
BtgZI	GCGATG	1 cut(s)	543
BtsCI	GGATG	4 cut(s)	462, 495, 855, 969
BtsIMutI	CAGTG	4 cut(s)	72, 536, 819, 1026
BtuMI	TCGCGA	1 cut(s)	1043
Cac8I	GCNNGC	1 cut(s)	1041
CaiI	CAGNNNCTG	1 cut(s)	112
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	2 cut(s)	346, 969
Cfr13I	GGNCC	3 cut(s)	4, 95, 688
ClaI	ATCGAT	1 cut(s)	1014
CseI	GACGC	2 cut(s)	549, 977
Csp6I	GTAC	1 cut(s)	1064
CviAII	CATG	6 cut(s)	61, 90, 760, 775, 920, 931
CviQI	GTAC	1 cut(s)	1064
DdeI	CTNAG	4 cut(s)	421, 548, 878, 910
DpnI	GATC	5 cut(s)	301, 385, 397, 929, 1069
DpnII	GATC	5 cut(s)	299, 383, 395, 927, 1067
DriI	GACNNNNNGTC	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	237, 760
Eam1105I	GACNNNNNGTC	1 cut(s)	93
EarI	CTCTTC	2 cut(s)	237, 760
Eco31I	GGTCTC	3 cut(s)	424, 575, 799
Eco47I	GGWCC	3 cut(s)	4, 95, 688
Eco88I	CYCGRG	1 cut(s)	413
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	95
FaeI	CATG	6 cut(s)	64, 93, 763, 778, 923, 934
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	6 cut(s)	60, 89, 759, 774, 919, 930
FbaI	TGATCA	1 cut(s)	927
Fnu4HI	GCNGC	3 cut(s)	324, 342, 526
FokI	GGATG	4 cut(s)	469, 502, 862, 976
Fsp4HI	GCNGC	3 cut(s)	324, 342, 526
FspBI	CTAG	4 cut(s)	32, 369, 1052, 1058
GlaI	GCGC	2 cut(s)	345, 968
GluI	GCNGC	3 cut(s)	324, 342, 526
GsaI	CCCAGC	2 cut(s)	978, 1125
GsuI	CTGGAG	2 cut(s)	260, 368
HapII	CCGG	4 cut(s)	485, 711, 1073, 1102
HgaI	GACGC	2 cut(s)	549, 977
HhaI	GCGC	2 cut(s)	346, 969
Hin1I	GRCGYC	3 cut(s)	65, 560, 988
Hin1II	CATG	6 cut(s)	64, 93, 763, 778, 923, 934
Hin6I	GCGC	2 cut(s)	344, 967
HinP1I	GCGC	2 cut(s)	344, 967
HinfI	GANTC	4 cut(s)	52, 109, 495, 752
HpaII	CCGG	4 cut(s)	485, 711, 1073, 1102
HphI	GGTGA	4 cut(s)	712, 730, 883, 983
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	5 cut(s)	108, 114, 243, 424, 963
Hpy188III	TCNNGA	6 cut(s)	277, 297, 439, 703, 931, 1042
Hpy8I	GTNNAC	1 cut(s)	691
Hpy99I	CGWCG	3 cut(s)	503, 565, 811
HpyAV	CCTTC	3 cut(s)	366, 537, 1085
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	3 cut(s)	11, 785, 919
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 611, 911
HpyF3I	CTNAG	4 cut(s)	421, 548, 878, 910
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	3 cut(s)	65, 560, 988
Hsp92II	CATG	6 cut(s)	64, 93, 763, 778, 923, 934
HspAI	GCGC	2 cut(s)	344, 967
KflI	GGGWCCC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	927
Kzo9I	GATC	5 cut(s)	299, 383, 395, 927, 1067
LmnI	GCTCC	3 cut(s)	666, 837, 1104
Lsp1109I	GCAGC	1 cut(s)	537
LweI	GCATC	4 cut(s)	471, 520, 772, 954
MaeI	CTAG	4 cut(s)	32, 369, 1052, 1058
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	3 cut(s)	329, 978, 989
MalI	GATC	5 cut(s)	301, 385, 397, 929, 1069
MbiI	CCGCTC	1 cut(s)	743
MboI	GATC	5 cut(s)	299, 383, 395, 927, 1067
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	8 cut(s)	19, 40, 121, 192, 260, 267, 449, 623
MlyI	GAGTC	3 cut(s)	46, 103, 746
MmeI	TCCRAC	2 cut(s)	249, 934
MseI	TTAA	1 cut(s)	885
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	4 cut(s)	485, 711, 1073, 1102
MspR9I	CCNGG	4 cut(s)	486, 712, 1074, 1103
MvnI	CGCG	2 cut(s)	344, 1043
MwoI	GCNNNNNNNGC	3 cut(s)	409, 611, 911
NciI	CCSGG	4 cut(s)	486, 712, 1074, 1103
NdeII	GATC	5 cut(s)	299, 383, 395, 927, 1067
NlaIII	CATG	6 cut(s)	64, 93, 763, 778, 923, 934
NlaIV	GGNNCC	6 cut(s)	6, 84, 96, 97, 514, 833
NmuCI	GTSAC	1 cut(s)	989
NruI	TCGCGA	1 cut(s)	1043
OliI	CACNNNNGTG	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	930
PfeI	GAWTC	1 cut(s)	495
PkrI	GCNGC	3 cut(s)	325, 343, 527
Ple19I	CGATCG	1 cut(s)	1070
PleI	GAGTC	3 cut(s)	46, 103, 746
PpsI	GAGTC	3 cut(s)	46, 103, 746
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
PspFI	CCCAGC	2 cut(s)	974, 1121
PspN4I	GGNNCC	6 cut(s)	6, 84, 96, 97, 514, 833
PspPI	GGNCC	3 cut(s)	4, 95, 688
PspPPI	RGGWCCY	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	299
PvuI	CGATCG	1 cut(s)	1070
RruI	TCGCGA	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	1065
RsaNI	GTAC	1 cut(s)	1064
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	885
SatI	GCNGC	3 cut(s)	324, 342, 526
Sau3AI	GATC	5 cut(s)	299, 383, 395, 927, 1067
Sau96I	GGNCC	3 cut(s)	4, 95, 688
SchI	GAGTC	3 cut(s)	46, 103, 746
ScrFI	CCNGG	4 cut(s)	486, 712, 1074, 1103
SfaNI	GCATC	4 cut(s)	471, 520, 772, 954
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	3 cut(s)	4, 95, 688
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	5 cut(s)	413, 439, 675, 788, 796
SmoI	CTYRAG	5 cut(s)	413, 439, 675, 788, 796
SpeI	ACTAGT	1 cut(s)	31
Sse9I	AATT	8 cut(s)	19, 40, 121, 192, 260, 267, 449, 623
SsiI	CCGC	5 cut(s)	324, 339, 342, 741, 869
SspMI	CTAG	4 cut(s)	32, 369, 1052, 1058
StyD4I	CCNGG	4 cut(s)	484, 710, 1072, 1101
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	4 cut(s)	414, 498, 806, 1014
TasI	AATT	8 cut(s)	19, 40, 121, 192, 260, 267, 449, 623
TauI	GCSGC	2 cut(s)	326, 344
TfiI	GAWTC	1 cut(s)	495
Tru1I	TTAA	1 cut(s)	885
Tru9I	TTAA	1 cut(s)	885
TscAI	CASTG	4 cut(s)	79, 543, 826, 1033
TseFI	GTSAC	1 cut(s)	989
TseI	GCWGC	1 cut(s)	525
Tsp45I	GTSAC	1 cut(s)	989
TspDTI	ATGAA	4 cut(s)	145, 473, 776, 947
TspGWI	ACGGA	2 cut(s)	403, 764
TspRI	CASTG	4 cut(s)	79, 543, 826, 1033
VpaK11BI	GGWCC	3 cut(s)	4, 95, 688
XagI	CCTNNNNNAGG	1 cut(s)	431
XapI	RAATTY	3 cut(s)	40, 267, 623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	4 cut(s)	32, 369, 1052, 1058
ZraI	GACGTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.