Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

41284993 .. 41285869

Gene Structure 877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAGCTTGGTTCTTGGTGGGCACCCATAGGAAGCACTGTAGCATTTGAGACCCTATGCCAAGACCATTCTGCTTCTTTTCCCCCTCACAAATTCACATTTCCTCCTATTCTCAAAGCCTGTGCCAAGCTCCTATCAGCCCCTCAAGTCCAAATAGTCCACACCCATCTCCTGAAAACCGGGTTCTTCTCCGACATCTACACTATCACCGCTCTCATGGACTCTTCCATGAAGCTCAACCTCATGGATGATGCACTCAAGGTCTCAAGGGTTTCTGCTGCAAAGTTGTTTGAACATATGTCTGTCAAGAATGTGGTGAGCTATAATGCTTTTATAATAGGGCGTTTACAGAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCACTGACATTGGTTTCGGTGCATGGTTTGATCATGAAAGATGATGGTATCGGCGTTGGAGTTCGGATGTGGTGGAGGAGGGCGTGTGTTGAATCGATTTGGCTTTTAGGCTTGGGAGATCTGAGAGAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

184

Amino Acids

20.56

Weight (kDa)

9.57

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	22
AccBSI	CCGCTC	1 cut(s)	212
AciI	CCGC	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	92, 418
AgsI	TTSAA	2 cut(s)	293, 512
AluBI	AGCT	4 cut(s)	7, 130, 235, 321
AluI	AGCT	4 cut(s)	7, 130, 235, 321
Alw26I	GTCTC	2 cut(s)	44, 268
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	92, 418
ArsI	GACNNNNNNTTYG	2 cut(s)	418, 450
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	199, 328, 419
BaeGI	GKGCMC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	174, 458
BclI	TGATCA	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	44, 268
BfmI	CTRYAG	1 cut(s)	39
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	24, 360
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	241
BpuEI	CTTGAG	3 cut(s)	129, 242, 250
BpuMI	CCSGG	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	515
BsaI	GGTCTC	2 cut(s)	44, 268
BsaJI	CCNNGG	1 cut(s)	362
BsaXI	ACNNNNNCTCC	4 cut(s)	88, 118, 490, 520
BseCI	ATCGAT	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	3 cut(s)	253, 382, 492
BseMII	CTCAG	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	511
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	22
BshVI	ATCGAT	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	44, 268
Bso31I	GGTCTC	2 cut(s)	44, 268
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	450, 538
BspACI	CCGC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	534
BspDI	ATCGAT	1 cut(s)	515
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	2 cut(s)	24, 360
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	2 cut(s)	44, 268
BsrBI	CCGCTC	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	2 cut(s)	450, 538
BssT1I	CCWWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	542
BstF5I	GGATG	3 cut(s)	253, 382, 492
BstKTI	GATC	2 cut(s)	453, 541
BstMAI	GTCTC	2 cut(s)	44, 268
BstMBI	GATC	2 cut(s)	450, 538
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	515
BsuTUI	ATCGAT	1 cut(s)	515
BtsCI	GGATG	3 cut(s)	253, 382, 492
BtsIMutI	CAGTG	2 cut(s)	36, 422
CciI	TCATGA	1 cut(s)	453
ClaI	ATCGAT	1 cut(s)	515
CviAII	CATG	6 cut(s)	217, 229, 244, 399, 443, 454
CviJI	RGCY	8 cut(s)	7, 119, 130, 140, 235, 321, 523, 531
CviKI_1	RGCY	8 cut(s)	7, 119, 130, 140, 235, 321, 523, 531
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	2 cut(s)	452, 540
DpnII	GATC	2 cut(s)	450, 538
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	362
Eco31I	GGTCTC	2 cut(s)	44, 268
EcoRI	GAATTC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	6 cut(s)	220, 232, 247, 402, 446, 457
FatI	CATG	6 cut(s)	216, 228, 243, 398, 442, 453
FauNDI	CATATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	3 cut(s)	260, 389, 499
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	6 cut(s)	220, 232, 247, 402, 446, 457
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	2 cut(s)	221, 512
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	3 cut(s)	199, 328, 419
Hpy166II	GTNNAC	2 cut(s)	160, 347
Hpy188I	TCNGA	4 cut(s)	193, 417, 486, 543
Hpy188III	TCNNGA	3 cut(s)	172, 307, 454
Hpy8I	GTNNAC	2 cut(s)	160, 347
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	254, 281, 442
HpyF3I	CTNAG	1 cut(s)	542
Hsp92II	CATG	6 cut(s)	220, 232, 247, 402, 446, 457
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	450, 538
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	3 cut(s)	133, 185, 193
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	241
MalI	GATC	2 cut(s)	452, 540
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	2 cut(s)	450, 538
MboII	GAAGA	2 cut(s)	178, 216
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	2 cut(s)	92, 418
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	3 cut(s)	216, 354, 457
MnlI	CCTC	8 cut(s)	96, 114, 153, 251, 398, 489, 492, 543
MseI	TTAA	1 cut(s)	384
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	181
NciI	CCSGG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	2 cut(s)	450, 538
NlaIII	CATG	6 cut(s)	220, 232, 247, 402, 446, 457
NlaIV	GGNNCC	2 cut(s)	24, 360
NspI	RCATGY	1 cut(s)	402
PagI	TCATGA	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	24, 360
PsuI	RGATCY	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	450, 538
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	8 cut(s)	9, 132, 237, 243, 264, 323, 409, 554
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	39
SmlI	CTYRAG	3 cut(s)	144, 257, 265
SmoI	CTYRAG	3 cut(s)	144, 257, 265
Sse9I	AATT	2 cut(s)	92, 418
SsiI	CCGC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	515
TasI	AATT	2 cut(s)	92, 418
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	43, 429
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	17, 245, 470
TspRI	CASTG	2 cut(s)	43, 429
XapI	RAATTY	2 cut(s)	92, 418
XceI	RCATGY	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.