Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

70780047 .. 70781626

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG409600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGATTGCGTGGCGGTGAAGCTCGGGGTTGAGAGTGATGTTTATGTTGCTACCTCAGCTGTGAGTATGTATTGGAGCTGTGGGGAGTTGGTTTCTGCTGCAAAGTTGTTTGAACATATGCCTATCAAGAATGTGAACGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACGTTGGTTTCGATCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

76

Amino Acids

8.27

Weight (kDa)

7.71

Isoelectric Point (pI)

22.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	3 cut(s)	22, 59, 78
AluI	AGCT	3 cut(s)	22, 59, 78
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	202
ArsI	GACNNNNNNTTYG	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	28, 203
AvaI	CYCGRG	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	85
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	213
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	3 cut(s)	22, 59, 78
CviKI_1	RGCY	3 cut(s)	22, 59, 78
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	186
FaiI	YATR	6 cut(s)	45, 68, 117, 119, 184, 229
FatI	CATG	1 cut(s)	182
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	186
HphI	GGTGA	2 cut(s)	28, 203
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	85
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MluCI	AATT	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	64, 182
MseI	TTAA	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	222
SetI	ASST	6 cut(s)	24, 56, 61, 80, 193, 215
SgeI	CNNG	7 cut(s)	22, 35, 37, 139, 151, 159, 195
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	146
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	221
TasI	AATT	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	208
TspRI	CASTG	1 cut(s)	213
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.