Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

13801051 .. 13801641

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTCCACACCCATCTCCTCAAAATTGGGTTCTTCTCCGACGTCTCCGCAACCACCAATCTCACGGACGCTTCCATGAAGCTCAACCTCATGGACAATGCACTTAAGGTGTTCGACGAAATGCCTCACCAAAACTTGGCTCCGGTAAACACTATGATTTCCGGGTTGTTGCATAATGGACATCGTAGAGAGGCTTTAAAGCAGGGGATGGGAATAGATTGCGTGGCGGTGAAGCTCGGGGTTGAAAGTGATGTTTATGTTGCTACCTCAACTGTGAGTATGTATTGGAGCTGTGGGGAGTTGGTTTCTGCTGCAAAGTTGTTTGAACATATGCCTGTCAAGAATGTGGTGAGCTATAATGCTTTTATAACAAGGCTTTTGCAAAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAACAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGGTTTCGGTGCTTTCTGCTTGTGCTATTGTTTTGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

168

Amino Acids

18.43

Weight (kDa)

7.73

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	114 - 163	3.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AatII	GACGTC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	136
AciI	CCGC	2 cut(s)	48, 227
AcsI	RAATTY	1 cut(s)	451
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflII	CTTAAG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	245, 326
AluBI	AGCT	4 cut(s)	82, 235, 291, 354
AluI	AGCT	4 cut(s)	82, 235, 291, 354
Alw26I	GTCTC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	4 cut(s)	119, 241, 361, 452
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	21, 202
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	49
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	141, 393
BmrFI	CCNGG	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	2 cut(s)	213, 415
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	143, 162
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	236
BspACI	CCGC	2 cut(s)	48, 227
BspLI	GGNNCC	2 cut(s)	141, 393
BspTI	CTTAAG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	395
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	213, 415
BstMAI	GTCTC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	213, 415
BtsIMutI	CAGTG	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	77
CviAII	CATG	3 cut(s)	76, 91, 432
CviJI	RGCY	7 cut(s)	82, 140, 194, 235, 291, 354, 376
CviKI_1	RGCY	7 cut(s)	82, 140, 194, 235, 291, 354, 376
DraI	TTTAAA	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	3 cut(s)	79, 94, 435
FatI	CATG	3 cut(s)	75, 90, 431
FauNDI	CATATG	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	2 cut(s)	220, 422
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
HapII	CCGG	2 cut(s)	143, 162
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	79, 94, 435
HpaII	CCGG	2 cut(s)	143, 162
HphI	GGTGA	4 cut(s)	119, 241, 361, 452
Hpy166II	GTNNAC	2 cut(s)	7, 148
Hpy188I	TCNGA	3 cut(s)	40, 450, 506
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	2 cut(s)	7, 148
Hpy99I	CGWCG	2 cut(s)	44, 119
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	101, 172, 314, 382
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	79, 94, 435
LmnI	GCTCC	2 cut(s)	145, 288
LpnPI	CCDG	4 cut(s)	156, 175, 188, 348
Lsp1109I	GCAGC	1 cut(s)	298
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	457
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	2 cut(s)	24, 451
MmeI	TCCRAC	2 cut(s)	63, 387
MnlI	CCTC	6 cut(s)	29, 98, 135, 184, 277, 431
MseI	TTAA	3 cut(s)	105, 197, 417
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	2 cut(s)	143, 162
MspR9I	CCNGG	1 cut(s)	163
NciI	CCSGG	1 cut(s)	163
NdeI	CATATG	1 cut(s)	330
NlaIII	CATG	3 cut(s)	79, 94, 435
NlaIV	GGNNCC	2 cut(s)	141, 393
NmuCI	GTSAC	1 cut(s)	457
NspI	RCATGY	1 cut(s)	435
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	141, 393
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	105, 197, 417
SatI	GCNGC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	9 cut(s)	45, 84, 90, 111, 237, 269, 293, 356, 442
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	24, 451
SsiI	CCGC	2 cut(s)	48, 227
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	24, 451
Tru1I	TTAA	3 cut(s)	105, 197, 417
Tru9I	TTAA	3 cut(s)	105, 197, 417
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	462
Van91I	CCANNNNNTGG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	451
XceI	RCATGY	1 cut(s)	435
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.