Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

25860839 .. 25861429

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTCCACACCCATCTCCTCAAAACCGGGTTCTTCTCCGACGTCTCCGAAGCTACCGCTCTCACGGACGCTTCCATGAAGCTCAACCTCTTGGACAATGCACTCAAGGTGTTCGATGAAATGTCTCACCGAAACTTGGCACCCGTAAACACTGTGATTTCCTGGTTGTTGCATAATGGACATCGCAGAGAGGCTTTAAAGGTGTGCAAGAGCGTTGGTTTTGGAGGGCTCGGGTTGAATTCGGTTACTATAGCTAGTGTGTTTTCGGCGTGTGACAATGCGAAGCAGGGGATGGGAATGGATTGCGTGGCGGTGAAGCTCGGGGTTGAGAGTGATGTTTATGTTGCTACCTTAGCTGTGAGTATGTATTGGAGCTGTGGGGAGTTGGTTTCTGCTTCAAAGTTGTTTGAACATATGCCTGTCAAGAATGTGGTGAGCTATAATGCTTTTATAATAGGGCTTTTGCAGAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGGTTTCGGTTCTTTCTGCTCGTGCTAGTGTTTTGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

196

Amino Acids

21.21

Weight (kDa)

8.61

Isoelectric Point (pI)

27.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	142 - 188	2.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AatII	GACGTC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	139
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	2 cut(s)	57, 311
AcsI	RAATTY	2 cut(s)	238, 535
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	238, 399, 410
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	7 cut(s)	53, 82, 254, 319, 356, 375, 438
AluI	AGCT	7 cut(s)	53, 82, 254, 319, 356, 375, 438
Alw26I	GTCTC	2 cut(s)	49, 129
Ama87I	CYCGRG	2 cut(s)	230, 320
ApoI	RAATTY	2 cut(s)	238, 535
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	4 cut(s)	119, 325, 445, 536
AvaI	CYCGRG	2 cut(s)	230, 320
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	567
BccI	CCATC	2 cut(s)	21, 286
BciT130I	CCWGG	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	49, 129
BfaI	CTAG	2 cut(s)	255, 573
BfmI	CTRYAG	1 cut(s)	249
Bme1390I	CCNGG	2 cut(s)	28, 163
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	230, 320
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	141, 477
BmrFI	CCNGG	2 cut(s)	28, 163
Bpu10I	CCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	2 cut(s)	297, 499
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	139
BsiHKCI	CYCGRG	2 cut(s)	230, 320
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	2 cut(s)	49, 129
BsmBI	CGTCTC	1 cut(s)	49
BsoBI	CYCGRG	2 cut(s)	230, 320
Bsp1286I	GDGCHC	1 cut(s)	231
BspACI	CCGC	2 cut(s)	57, 311
BspLI	GGNNCC	2 cut(s)	141, 477
BspT107I	GGYRCC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	479
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	297, 499
BstMAI	GTCTC	2 cut(s)	49, 129
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	26, 161
BstSFI	CTRYAG	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	297, 499
BtsIMutI	CAGTG	2 cut(s)	150, 546
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	77
CviAII	CATG	2 cut(s)	76, 516
DdeI	CTNAG	1 cut(s)	352
DraI	TTTAAA	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	2 cut(s)	230, 320
EcoRI	GAATTC	2 cut(s)	238, 535
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	479
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	2 cut(s)	79, 519
FatI	CATG	2 cut(s)	75, 515
FauNDI	CATATG	1 cut(s)	414
FokI	GGATG	2 cut(s)	304, 506
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	255, 573
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	79, 519
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	4 cut(s)	119, 325, 445, 536
Hpy166II	GTNNAC	2 cut(s)	7, 148
Hpy188I	TCNGA	4 cut(s)	40, 49, 534, 590
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	2 cut(s)	7, 148
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	101, 172, 207, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	79, 519
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	5 cut(s)	40, 148, 175, 272, 432
MaeI	CTAG	2 cut(s)	255, 573
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	244, 272, 541
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	238, 535
MmeI	TCCRAC	2 cut(s)	63, 471
MnlI	CCTC	5 cut(s)	29, 98, 184, 218, 515
MseI	TTAA	2 cut(s)	197, 501
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	28, 163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	414
NlaIII	CATG	2 cut(s)	79, 519
NlaIV	GGNNCC	2 cut(s)	141, 477
NmuCI	GTSAC	2 cut(s)	272, 541
NspI	RCATGY	1 cut(s)	519
PsiI	TTATAA	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	141, 477
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	197, 501
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	28, 163
SduI	GDGCHC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	238, 535
SsiI	CCGC	2 cut(s)	57, 311
SspMI	CTAG	2 cut(s)	255, 573
StyD4I	CCNGG	2 cut(s)	26, 161
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	238, 535
Tru1I	TTAA	2 cut(s)	197, 501
Tru9I	TTAA	2 cut(s)	197, 501
TscAI	CASTG	2 cut(s)	157, 546
TseFI	GTSAC	2 cut(s)	272, 541
Tsp45I	GTSAC	2 cut(s)	272, 541
TspDTI	ATGAA	2 cut(s)	92, 132
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	157, 546
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	238, 535
XceI	RCATGY	1 cut(s)	519
XspI	CTAG	2 cut(s)	255, 573
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.