Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

15102765 .. 15103181

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG163100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTCCACACGCATCTCCTCAAAACTGGGTTCTTCTCCGACGTCTACGCAGCCACCATTCTCATGGACGCTTCCATGAAGCTCAACCTCATGGACAATGCACTCAAGGTGTTCGACGAAATGCCTCACCGAAACTTGGCTCCCGTAAACACTGTGATTTCAGGGTTGTTGCATAATGGACATCGCAGAGAGGCTTTAAAGGTGTGCAAGAGCGTTGGTTTTGGAGGGCTCAGATTGAATTTGGTTACTATAGCTAGTGTGTTTTCGGCGTGTGACAATGTGAAGCAGGGGATGGGAATGGATTGCGTGGCGATGAAGCTCGGGGTTGAGAGTGATGTTTATGTTGCTACCTCAGCTATGGGGAGTTGGTTTCTGCTGCAAAGTTGTTTGAACATATGCTTGTCAAGAATGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

138

Amino Acids

15.14

Weight (kDa)

8.33

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	238, 391
AluBI	AGCT	4 cut(s)	82, 254, 319, 356
AluI	AGCT	4 cut(s)	82, 254, 319, 356
Ama87I	CYCGRG	1 cut(s)	320
ApeKI	GCWGC	2 cut(s)	50, 376
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	62, 363
BccI	CCATC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	51, 377
BlsI	GCNGC	2 cut(s)	52, 378
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	22
BmuI	ACTGGG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	244, 366
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	62, 363
BsiHKCI	CYCGRG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	243, 365
BspLI	GGNNCC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	230, 352
BstF5I	GGATG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	62, 363
BstXI	CCANNNNNNTGG	1 cut(s)	64
BtgZI	GCGATG	2 cut(s)	167, 326
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	77
CviAII	CATG	3 cut(s)	64, 76, 91
CviJI	RGCY	8 cut(s)	53, 82, 140, 194, 229, 254, 319, 356
CviKI_1	RGCY	8 cut(s)	53, 82, 140, 194, 229, 254, 319, 356
DdeI	CTNAG	2 cut(s)	230, 352
DraI	TTTAAA	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	3 cut(s)	67, 79, 94
FaiI	YATR	9 cut(s)	65, 77, 92, 174, 251, 342, 359, 395, 397
FatI	CATG	3 cut(s)	63, 75, 90
FauNDI	CATATG	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	51, 377
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	51, 377
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	51, 377
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	67, 79, 94
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	3 cut(s)	7, 46, 148
Hpy188I	TCNGA	2 cut(s)	40, 233
Hpy188III	TCNNGA	1 cut(s)	405
Hpy8I	GTNNAC	3 cut(s)	7, 46, 148
Hpy99I	CGWCG	2 cut(s)	44, 119
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	101, 172, 207, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	230, 352
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	67, 79, 94
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	12, 147, 272
Lsp1109I	GCAGC	2 cut(s)	62, 363
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	244, 272
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	6 cut(s)	29, 98, 135, 184, 218, 361
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeI	CATATG	1 cut(s)	395
NlaIII	CATG	3 cut(s)	67, 79, 94
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	52, 378
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	2 cut(s)	51, 377
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	45, 84, 90, 111, 204, 256, 321, 353, 358
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	50, 376
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	92, 329
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.