Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

5423984 .. 5425840

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1077500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

ATGAGGCACGAAATTGCTAAGCTAGTCGCGAGTGGGTCGTACAGAGAAGCCCTCTGCTTACACGCGCAGCGCCACTCTGCTTCTCTGCGTCCTCACGAATTCACGTTCCCGCCTCTTTTCAAAGCCTGCGGGAAGCTCCGATCAGCTCTGCAGGCACAAGTTCTACATACCCATCTCGTCAAAACCGGGTTTTCGGCCGATGTTTACTCCGCCACTGCTCTGACCGATGCGTATATGAAACTTCGTTTTATGGAAGACGCACTCAAGGTGTTTGAGGAAATGCCTGAACGGAACTTGACTTCGTTGAACGCGGTGATTACCGGGTTTTTGCGAAATGGGTACTGTAGAGAGGCTCTGAGGTTGTTTAAGAACGTGGGGGTTGGAGGGTTCAAGCCCAATTCAGTTACGATAGCTAGTATGATATCGGCATGTGGGAGTGCAGAACAAGGCATGGAAATGCATTGCTTGGCTGTGAAGCTGGGCGTTGACAGCGATGTTTATGTTGGGACGTCGTTTCTGACGATGTATTCGAACTGCGGAAAGTTGGTTTTGGCTGAGAAGGTGTTTGAGGAAATGGCAATAAAGAATGTTGTGAGCTATAATGCTTTTGTTTCAGGGCTCTTGCAGAATGGCGTTCCTCATGTGGCGTTGGATGTGTTTAAGCAAATGAGAGCATGTACAGGTGAAAATCCCAATTCAGTTACGTTGATTTCGGTTGTTTCTACCTGTGCTAGTCTTTCGTATCTCCAATTTGGCAAGCAGGTTCACGCTTTGGTCGTTAAAATTGAGATGGGGCTTGATGTTATGATTGGAACAGCACTTGTGGACATGTATTCCAAGTGTGGTTGTTGGCAGCTGGCTTATGCTATTTTCAAAGAACTAGATGAAAAAAGGAACTTGTTTACATGGAATGCCATGATCGCCGGAATGATGTTGAATGCGCAAACTGAGAATGCCGTTGAGCTATTTGAACAGCTAGAAATTGAAGGATTTGAACCCGATTCAGTTACTTGGAATTCAATGATCAGTGGGTTTTCACAACTAGGGAAGGGGATTGAAGCTTTCAAATATTTTAAGAGAATGCAATCAGCTGGTGCAGTCCCCAGTTTAAAATCTATCACAAGTCTTCTACCAGCGTGTGCAGATTTATCTGCTCTGCAATGTGGAAAAGAAGTTCATGGGCACGCAGTTAGGACCTCTATTAGCAATGATCTGTTCATTTCAACTGCTCTTATTGACATGTACATGAAATGTGGGCAGTCTACTTGCGCAAGAAGAATTTTTGATGGGTTTCGAATAAAACCCAATGATCCAGCATTTTGGAATGCAATCATATCAGGGTATGGAAGAAACGGTGGGAGTGAATCTGCATTCGGAATCTTTGAGCAGATGTTGGAAGAAAAAGTACTACCAAATGCTGCAACTTTCACGAGTCTTCTATCTATGTGCAGTCACACTGGTTTGGTGGACAAGGGATGGCAAGTTTTTAGGATGATGAACAAAGATTTTGGTCTAAAACCAAATCAAGAGCATTTTGGTTGCATGGTTGATCTTCTGGGTCGAACTGGCAGGTTGGATGAAGCCCGAGAACTAATAGAAGAATTACCAGAGCCTTCTGGAGCAGTTTTCGCTTCTTTGCTAGGTGCCTGTGAATGCCATTTGGATTCAGAACTGGGGAAAGAAGTGGCTGTAAAACTTTCAGAATTAGAGCCAGTGGACCCGGTACCTTTCGTGATCCTTTCGAAGATATATGCTGCACTTGGAAGGTGGGAGGATGCAGAAAAGATTAGAGGATTGGTGAATGATAAAACACGAAGAAAGCTCCCTGGCTTTAGTTTATTAAGACTGCATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

619

Amino Acids

68.12

Weight (kDa)

6.46

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	101 - 144	4.1e-07	PPR repeat family
PPR_2	PF13041	195 - 244	2.3e-06	PPR repeat family
PPR_2	PF13041	299 - 346	3.9e-11	PPR repeat family
PPR_2	PF13041	333 - 381	3.2e-09	PPR repeat family
PPR	PF01535	336 - 365	8e-09	PPR repeat
PPR_2	PF13041	440 - 484	7e-11	PPR repeat family
PPR	PF01535	441 - 468	7.6e-06	PPR repeat
PPR_3	PF13812	441 - 483	9.7e-06	Pentatricopeptide repeat domain
E_motif	PF20431	553 - 613	9.8e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	512
Acc16I	TGCGCA	2 cut(s)	942, 1270
Acc36I	ACCTGC	2 cut(s)	751, 1560
Acc65I	GGTACC	1 cut(s)	1723
AccB1I	GGYRCC	2 cut(s)	1643, 1723
AccI	GTMKAC	1 cut(s)	1262
AccII	CGCG	3 cut(s)	29, 65, 311
AciI	CCGC	5 cut(s)	110, 129, 210, 311, 537
AclWI	GGATC	2 cut(s)	1304, 1729
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	3 cut(s)	98, 1015, 1278
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	6 cut(s)	41, 341, 679, 1244, 1407, 1725
AflIII	ACRYGT	2 cut(s)	828, 1239
AjnI	CCWGG	1 cut(s)	1825
AloI	GAACNNNNNNTCC	2 cut(s)	1158, 1190
AlwI	GGATC	2 cut(s)	1304, 1729
Ama87I	CYCGRG	1 cut(s)	1584
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	4 cut(s)	67, 853, 1418, 1754
ApoI	RAATTY	3 cut(s)	98, 1015, 1278
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
Asp718I	GGTACC	1 cut(s)	1723
AspLEI	GCGC	4 cut(s)	67, 72, 943, 1271
AspS9I	GGNCC	2 cut(s)	1194, 1717
AsuC2I	CCSGG	3 cut(s)	187, 322, 1721
AsuHPI	GGTGA	3 cut(s)	325, 695, 1810
AsuII	TTCGAA	3 cut(s)	530, 1294, 1742
AvaI	CYCGRG	1 cut(s)	1584
AvaII	GGWCC	2 cut(s)	1194, 1717
BaeGI	GKGCMC	1 cut(s)	1185
BanI	GGYRCC	2 cut(s)	1643, 1723
BanII	GRGCYC	1 cut(s)	621
BarI	GAAGNNNNNNTAC	2 cut(s)	1389, 1421
BauI	CACGAG	1 cut(s)	1429
BbsI	GAAGAC	3 cut(s)	261, 1118, 1427
BbvI	GCAGC	4 cut(s)	79, 865, 1405, 1741
BccI	CCATC	4 cut(s)	180, 784, 1280, 1470
BceAI	ACGGC	1 cut(s)	941
BciT130I	CCWGG	1 cut(s)	1827
BclI	TGATCA	1 cut(s)	1023
BcnI	CCSGG	3 cut(s)	187, 322, 1721
BfaI	CTAG	7 cut(s)	23, 414, 732, 881, 977, 1043, 1640
BfmI	CTRYAG	2 cut(s)	149, 343
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	2 cut(s)	751, 1560
BisI	GCNGC	4 cut(s)	68, 854, 1419, 1755
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	4 cut(s)	69, 855, 1420, 1756
BmcAI	AGTACT	1 cut(s)	1407
Bme1390I	CCNGG	4 cut(s)	187, 322, 1721, 1827
Bme18I	GGWCC	2 cut(s)	1194, 1717
BmeT110I	CYCGRG	1 cut(s)	1584
BmgT120I	GGNCC	2 cut(s)	1194, 1717
BmiI	GGNNCC	3 cut(s)	1645, 1719, 1725
BmrFI	CCNGG	4 cut(s)	187, 322, 1721, 1827
BmrI	ACTGGG	2 cut(s)	1098, 1682
BmsI	GCATC	2 cut(s)	217, 1765
BmuI	ACTGGG	2 cut(s)	1098, 1682
BpiI	GAAGAC	3 cut(s)	261, 1118, 1427
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BpmI	CTGGAG	1 cut(s)	1638
Bpu1102I	GCTNAGC	1 cut(s)	18
Bpu14I	TTCGAA	3 cut(s)	530, 1294, 1742
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	3 cut(s)	187, 322, 1721
BsaHI	GRCGYC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	1825
Bse1I	ACTGG	5 cut(s)	1104, 1462, 1570, 1677, 1712
Bse3DI	GCAATG	3 cut(s)	460, 1166, 1213
BseBI	CCWGG	1 cut(s)	1827
BseDI	CCNNGG	1 cut(s)	1825
BseGI	GGATG	5 cut(s)	658, 1481, 1497, 1582, 1780
BseMI	GCAATG	3 cut(s)	460, 1166, 1213
BseMII	CTCAG	3 cut(s)	347, 546, 939
BseNI	ACTGG	5 cut(s)	1104, 1462, 1570, 1677, 1712
BseSI	GKGCMC	1 cut(s)	1185
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	4 cut(s)	79, 865, 1405, 1741
BseYI	CCCAGC	1 cut(s)	478
BsgI	GTGCAG	5 cut(s)	459, 1116, 1161, 1468, 1740
Bsh1236I	CGCG	3 cut(s)	29, 65, 311
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	2 cut(s)	1643, 1723
BsiEI	CGRYCG	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	1584
BsiSI	CCGG	4 cut(s)	186, 321, 924, 1721
BslFI	GGGAC	2 cut(s)	520, 1085
BsmFI	GGGAC	2 cut(s)	520, 1085
BsmI	GAATGC	7 cut(s)	916, 943, 958, 1086, 1330, 1370, 1658
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	1584
Bsp119I	TTCGAA	3 cut(s)	530, 1294, 1742
Bsp1286I	GDGCHC	2 cut(s)	621, 1185
Bsp1407I	TGTACA	2 cut(s)	677, 1242
Bsp143I	GATC	7 cut(s)	140, 918, 1023, 1210, 1309, 1549, 1734
Bsp1720I	GCTNAGC	1 cut(s)	18
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	5 cut(s)	110, 129, 210, 311, 537
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	3 cut(s)	348, 547, 940
BspFNI	CGCG	3 cut(s)	29, 65, 311
BspLI	GGNNCC	3 cut(s)	1645, 1719, 1725
BspMAI	CTGCAG	1 cut(s)	153
BspMI	ACCTGC	2 cut(s)	751, 1560
BspPI	GGATC	2 cut(s)	1304, 1729
BspT104I	TTCGAA	3 cut(s)	530, 1294, 1742
BspT107I	GGYRCC	2 cut(s)	1643, 1723
BsrDI	GCAATG	3 cut(s)	460, 1166, 1213
BsrGI	TGTACA	2 cut(s)	677, 1242
BsrI	ACTGG	5 cut(s)	1104, 1462, 1570, 1677, 1712
BssECI	CCNNGG	1 cut(s)	1825
BssMI	GATC	7 cut(s)	140, 918, 1023, 1210, 1309, 1549, 1734
BssNI	GRCGYC	1 cut(s)	509
BssSI	CACGAG	1 cut(s)	1429
Bst2BI	CACGAG	1 cut(s)	1429
Bst2UI	CCWGG	1 cut(s)	1827
Bst4CI	ACNGT	2 cut(s)	344, 1355
BstACI	GRCGYC	1 cut(s)	509
BstAUI	TGTACA	2 cut(s)	677, 1242
BstBI	TTCGAA	3 cut(s)	530, 1294, 1742
BstC8I	GCNNGC	5 cut(s)	127, 153, 758, 858, 1185
BstDEI	CTNAG	4 cut(s)	18, 356, 555, 948
BstF5I	GGATG	5 cut(s)	658, 1481, 1497, 1582, 1780
BstFNI	CGCG	3 cut(s)	29, 65, 311
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	4 cut(s)	67, 72, 943, 1271
BstKTI	GATC	7 cut(s)	143, 921, 1026, 1213, 1312, 1552, 1737
BstMBI	GATC	7 cut(s)	140, 918, 1023, 1210, 1309, 1549, 1734
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 489, 920, 1628
BstNI	CCWGG	1 cut(s)	1827
BstNSI	RCATGY	4 cut(s)	432, 678, 832, 1243
BstSCI	CCNGG	4 cut(s)	185, 320, 1719, 1825
BstSFI	CTRYAG	2 cut(s)	149, 343
BstSLI	GKGCMC	1 cut(s)	1185
BstUI	CGCG	3 cut(s)	29, 65, 311
BstV1I	GCAGC	4 cut(s)	79, 865, 1405, 1741
BstV2I	GAAGAC	3 cut(s)	261, 1118, 1427
BstXI	CCANNNNNNTGG	1 cut(s)	1320
BstZI	CGGCCG	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	5 cut(s)	658, 1481, 1497, 1582, 1780
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	4 cut(s)	213, 1033, 1455, 1719
BtuMI	TCGCGA	1 cut(s)	29
BveI	ACCTGC	2 cut(s)	751, 1560
Cac8I	GCNNGC	5 cut(s)	127, 153, 758, 858, 1185
CfoI	GCGC	4 cut(s)	67, 72, 943, 1271
Cfr13I	GGNCC	2 cut(s)	1194, 1717
CseI	GACGC	2 cut(s)	77, 266
Csp6I	GTAC	6 cut(s)	40, 340, 678, 1243, 1406, 1724
CviQI	GTAC	6 cut(s)	40, 340, 678, 1243, 1406, 1724
DdeI	CTNAG	4 cut(s)	18, 356, 555, 948
DpnI	GATC	7 cut(s)	142, 920, 1025, 1212, 1311, 1551, 1736
DpnII	GATC	7 cut(s)	140, 918, 1023, 1210, 1309, 1549, 1734
DraI	TTTAAA	1 cut(s)	1110
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	621
Eco32I	GATATC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	1194, 1717
Eco52I	CGGCCG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	1584
EcoO109I	RGGNCCY	1 cut(s)	1194
EcoRI	GAATTC	2 cut(s)	98, 1015
EcoRII	CCWGG	1 cut(s)	1825
EcoRV	GATATC	1 cut(s)	423
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	621
FaqI	GGGAC	2 cut(s)	520, 1085
FauI	CCCGC	2 cut(s)	117, 122
FbaI	TGATCA	1 cut(s)	1023
FblI	GTMKAC	1 cut(s)	1262
Fnu4HI	GCNGC	4 cut(s)	68, 854, 1419, 1755
FokI	GGATG	5 cut(s)	665, 1488, 1504, 1589, 1787
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	4 cut(s)	68, 854, 1419, 1755
FspBI	CTAG	7 cut(s)	23, 414, 732, 881, 977, 1043, 1640
FspI	TGCGCA	2 cut(s)	942, 1270
GlaI	GCGC	4 cut(s)	66, 71, 942, 1270
GluI	GCNGC	4 cut(s)	68, 854, 1419, 1755
GsaI	CCCAGC	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	1638
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	4 cut(s)	186, 321, 924, 1721
HgaI	GACGC	2 cut(s)	77, 266
HhaI	GCGC	4 cut(s)	67, 72, 943, 1271
Hin1I	GRCGYC	1 cut(s)	509
Hin6I	GCGC	4 cut(s)	65, 70, 941, 1269
HinP1I	GCGC	4 cut(s)	65, 70, 941, 1269
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	1059
HinfI	GANTC	5 cut(s)	1001, 1364, 1377, 1432, 1664
HpaII	CCGG	4 cut(s)	186, 321, 924, 1721
HphI	GGTGA	3 cut(s)	325, 695, 1810
Hpy166II	GTNNAC	8 cut(s)	205, 487, 766, 826, 903, 1263, 1468, 1717
Hpy188I	TCNGA	7 cut(s)	140, 222, 357, 519, 1376, 1669, 1702
Hpy188III	TCNNGA	6 cut(s)	28, 95, 1429, 1526, 1617, 1732
Hpy8I	GTNNAC	8 cut(s)	205, 487, 766, 826, 903, 1263, 1468, 1717
Hpy99I	CGWCG	1 cut(s)	514
HpyAV	CCTTC	5 cut(s)	553, 980, 1042, 1623, 1758
HpyCH4III	ACNGT	2 cut(s)	344, 1355
HpyCH4IV	ACGT	4 cut(s)	104, 372, 509, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 489, 920, 1628
HpyF3I	CTNAG	4 cut(s)	18, 356, 555, 948
HpySE526I	ACGT	4 cut(s)	104, 372, 509, 704
Hsp92I	GRCGYC	1 cut(s)	509
HspAI	GCGC	4 cut(s)	65, 70, 941, 1269
KpnI	GGTACC	1 cut(s)	1727
Ksp22I	TGATCA	1 cut(s)	1023
Kzo9I	GATC	7 cut(s)	140, 918, 1023, 1210, 1309, 1549, 1734
LmnI	GCTCC	3 cut(s)	141, 1619, 1827
Lsp1109I	GCAGC	4 cut(s)	79, 865, 1405, 1741
LweI	GCATC	2 cut(s)	217, 1765
MaeI	CTAG	7 cut(s)	23, 414, 732, 881, 977, 1043, 1640
MaeII	ACGT	4 cut(s)	104, 372, 509, 704
MaeIII	GTNAC	4 cut(s)	403, 700, 1006, 1451
MalI	GATC	7 cut(s)	142, 920, 1025, 1212, 1311, 1551, 1736
MboI	GATC	7 cut(s)	140, 918, 1023, 1210, 1309, 1549, 1734
MhlI	GDGCHC	2 cut(s)	621, 1185
MlyI	GAGTC	1 cut(s)	1441
MmeI	TCCRAC	4 cut(s)	361, 630, 1374, 1554
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	6 cut(s)	366, 660, 780, 1074, 1109, 1841
MslI	CAYNNNNRTG	2 cut(s)	455, 1244
MspA1I	CMGCKG	2 cut(s)	856, 1091
MspI	CCGG	4 cut(s)	186, 321, 924, 1721
MspR9I	CCNGG	4 cut(s)	187, 322, 1721, 1827
MteI	GCGCNGCGC	1 cut(s)	68
Mva1269I	GAATGC	7 cut(s)	916, 943, 958, 1086, 1330, 1370, 1658
MvaI	CCWGG	1 cut(s)	1827
MvnI	CGCG	3 cut(s)	29, 65, 311
MwoI	GCNNNNNNNGC	4 cut(s)	152, 489, 920, 1628
NciI	CCSGG	3 cut(s)	187, 322, 1721
NdeII	GATC	7 cut(s)	140, 918, 1023, 1210, 1309, 1549, 1734
NlaIV	GGNNCC	3 cut(s)	1645, 1719, 1725
NmuCI	GTSAC	1 cut(s)	1451
NruI	TCGCGA	1 cut(s)	29
NsbI	TGCGCA	2 cut(s)	942, 1270
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	4 cut(s)	432, 678, 832, 1243
NspV	TTCGAA	3 cut(s)	530, 1294, 1742
PciI	ACATGT	2 cut(s)	828, 1239
PcsI	WCGNNNNNNNCGW	3 cut(s)	518, 527, 774
PctI	GAATGC	7 cut(s)	916, 943, 958, 1086, 1330, 1370, 1658
PfeI	GAWTC	4 cut(s)	1001, 1364, 1377, 1664
PkrI	GCNGC	4 cut(s)	69, 855, 1420, 1756
PleI	GAGTC	1 cut(s)	1440
PpsI	GAGTC	1 cut(s)	1440
PpuMI	RGGWCCY	1 cut(s)	1194
PscI	ACATGT	2 cut(s)	828, 1239
Psp5II	RGGWCCY	1 cut(s)	1194
Psp6I	CCWGG	1 cut(s)	1825
PspFI	CCCAGC	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	1825
PspN4I	GGNNCC	3 cut(s)	1645, 1719, 1725
PspPI	GGNCC	2 cut(s)	1194, 1717
PspPPI	RGGWCCY	1 cut(s)	1194
PstI	CTGCAG	1 cut(s)	153
PvuII	CAGCTG	2 cut(s)	856, 1091
RruI	TCGCGA	1 cut(s)	29
RsaI	GTAC	6 cut(s)	41, 341, 679, 1244, 1407, 1725
RsaNI	GTAC	6 cut(s)	40, 340, 678, 1243, 1406, 1724
RseI	CAYNNNNRTG	2 cut(s)	455, 1244
SaqAI	TTAA	6 cut(s)	366, 660, 780, 1074, 1109, 1841
SatI	GCNGC	4 cut(s)	68, 854, 1419, 1755
Sau3AI	GATC	7 cut(s)	140, 918, 1023, 1210, 1309, 1549, 1734
Sau96I	GGNCC	2 cut(s)	1194, 1717
ScaI	AGTACT	1 cut(s)	1407
SchI	GAGTC	1 cut(s)	1441
ScrFI	CCNGG	4 cut(s)	187, 322, 1721, 1827
SduI	GDGCHC	2 cut(s)	621, 1185
SfaNI	GCATC	2 cut(s)	217, 1765
SfcI	CTRYAG	2 cut(s)	149, 343
SfuI	TTCGAA	3 cut(s)	530, 1294, 1742
SinI	GGWCC	2 cut(s)	1194, 1717
SmiMI	CAYNNNNRTG	2 cut(s)	455, 1244
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SsiI	CCGC	5 cut(s)	110, 129, 210, 311, 537
SspI	AATATT	1 cut(s)	1070
SspMI	CTAG	7 cut(s)	23, 414, 732, 881, 977, 1043, 1640
StyD4I	CCNGG	4 cut(s)	185, 320, 1719, 1825
TaaI	ACNGT	2 cut(s)	344, 1355
TaiI	ACGT	4 cut(s)	107, 375, 512, 707
TaqI	TCGA	4 cut(s)	530, 1294, 1561, 1742
TaqII	GACCGA	1 cut(s)	239
TatI	WGTACW	3 cut(s)	677, 1242, 1405
TfiI	GAWTC	4 cut(s)	1001, 1364, 1377, 1664
Tru1I	TTAA	6 cut(s)	366, 660, 780, 1074, 1109, 1841
Tru9I	TTAA	6 cut(s)	366, 660, 780, 1074, 1109, 1841
TscAI	CASTG	4 cut(s)	220, 1033, 1462, 1719
TseFI	GTSAC	1 cut(s)	1451
TseI	GCWGC	4 cut(s)	67, 853, 1418, 1754
Tsp45I	GTSAC	1 cut(s)	1451
TspDTI	ATGAA	7 cut(s)	251, 900, 1166, 1207, 1262, 1511, 1593
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	4 cut(s)	220, 1033, 1462, 1719
VpaK11BI	GGWCC	2 cut(s)	1194, 1717
XapI	RAATTY	3 cut(s)	98, 1015, 1278
XceI	RCATGY	4 cut(s)	432, 678, 832, 1243
XmiI	GTMKAC	1 cut(s)	1262
XspI	CTAG	7 cut(s)	23, 414, 732, 881, 977, 1043, 1640
ZraI	GACGTC	1 cut(s)	510
ZrmI	AGTACT	1 cut(s)	1407
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.