Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004520.1

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

71235 .. 71930

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004520.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgccaagaccactctgtttcttttccccctcacaaattcacatttcctcctatgctcaaagcttgtgccaagctcctatcagcccctcaagtccaaatggtccacacccatctcctgaaaaccgggttcttctccgacgtctacactatcaccgctctcacggatgcttccatgaagctcaacctcatggacgatgcactcgaggtctcaaggtgttcgacgaaatgcctcaccgaaacttggctcctgtaaacactctgatttttgggttgttgcataatggacattgcatagaggctttaaaagtgtgcaagagcgttggttttggagggctcgggttgaattcggttactatagctagtgtgttttcggcgtgtgaccatgcgaagcaggggatgggaatggattgcgtggcggtgaagctcagggttaagagtgatgtttatgttgctaccttagctgtgagtatgtatttgagctgtggggagttggtttatgctgcaaagttgtttgaacatatgtctgtcaagaatgtggttagctataatgcttttataatagggcgtttgcagaatggggttccaagggtggtgttggatgtgtttaagaaaatgagagcatgtagaggtgaaaatccgaattcactgacattggtttcggttctttctgcttgtgctagtgttttgtatctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

231

Amino Acids

25.25

Weight (kDa)

9.28

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
AatII	GACGTC	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	142
AciI	CCGC	2 cut(s)	154, 416
AcsI	RAATTY	3 cut(s)	36, 343, 640
AcyI	GRCGYC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	343, 515
AluBI	AGCT	8 cut(s)	63, 74, 179, 359, 424, 461, 480, 543
AluI	AGCT	8 cut(s)	63, 74, 179, 359, 424, 461, 480, 543
Alw26I	GTCTC	1 cut(s)	212
Ama87I	CYCGRG	2 cut(s)	201, 335
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	3 cut(s)	36, 343, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	4 cut(s)	143, 224, 430, 641
AvaI	CYCGRG	2 cut(s)	201, 335
AvaII	GGWCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	2 cut(s)	118, 391
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	360, 678
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	2 cut(s)	201, 335
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	246, 582
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	155, 185
Bpu10I	CCTNAGC	2 cut(s)	425, 457
BpuEI	CTTGAG	2 cut(s)	73, 194
BpuMI	CCSGG	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	584
BseGI	GGATG	3 cut(s)	170, 402, 604
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	487
BsiHKCI	CYCGRG	2 cut(s)	201, 335
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	2 cut(s)	201, 335
Bsp1286I	GDGCHC	1 cut(s)	336
BspACI	CCGC	2 cut(s)	154, 416
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	246, 582
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	584
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	584
BstACI	GRCGYC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	425, 457
BstF5I	GGATG	3 cut(s)	170, 402, 604
BstMAI	GTCTC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	170, 402, 604
BtsIMutI	CAGTG	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	101
CviAII	CATG	4 cut(s)	173, 188, 383, 621
DdeI	CTNAG	2 cut(s)	425, 457
DraI	TTTAAA	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	101
Eco88I	CYCGRG	2 cut(s)	201, 335
EcoRI	GAATTC	2 cut(s)	343, 640
EcoT14I	CCWWGG	1 cut(s)	584
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	584
FaeI	CATG	4 cut(s)	176, 191, 386, 624
FatI	CATG	4 cut(s)	172, 187, 382, 620
FauNDI	CATATG	1 cut(s)	519
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	3 cut(s)	177, 409, 611
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	2 cut(s)	360, 678
GluI	GCNGC	1 cut(s)	501
HapII	CCGG	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	4 cut(s)	176, 191, 386, 624
HindIII	AAGCTT	1 cut(s)	61
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	4 cut(s)	143, 224, 430, 641
Hpy166II	GTNNAC	3 cut(s)	104, 143, 253
Hpy188I	TCNGA	4 cut(s)	137, 261, 639, 695
Hpy188III	TCNNGA	2 cut(s)	116, 529
Hpy8I	GTNNAC	3 cut(s)	104, 143, 253
Hpy99I	CGWCG	2 cut(s)	141, 224
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	6 cut(s)	198, 277, 291, 312, 503, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	425, 457
HpySE526I	ACGT	1 cut(s)	139
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	176, 191, 386, 624
LmnI	GCTCC	2 cut(s)	79, 250
LpnPI	CCDG	5 cut(s)	129, 137, 261, 377, 412
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	2 cut(s)	155, 185
MaeI	CTAG	2 cut(s)	360, 678
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	349, 377
MbiI	CCGCTC	1 cut(s)	156
MboII	GAAGA	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	3 cut(s)	36, 343, 640
MmeI	TCCRAC	2 cut(s)	160, 576
MnlI	CCTC	9 cut(s)	40, 58, 97, 195, 197, 240, 289, 323, 620
MseI	TTAA	3 cut(s)	302, 432, 606
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	458
NciI	CCSGG	1 cut(s)	125
NdeI	CATATG	1 cut(s)	519
NlaIII	CATG	4 cut(s)	176, 191, 386, 624
NlaIV	GGNNCC	2 cut(s)	246, 582
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	624
PaeR7I	CTCGAG	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	557
PspN4I	GGNNCC	2 cut(s)	246, 582
PspPI	GGNCC	1 cut(s)	101
PspXI	VCTCGAGB	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	302, 432, 606
SatI	GCNGC	1 cut(s)	501
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	155, 185
SfcI	CTRYAG	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	3 cut(s)	88, 201, 209
SmoI	CTYRAG	3 cut(s)	88, 201, 209
Sse9I	AATT	3 cut(s)	36, 343, 640
SsiI	CCGC	2 cut(s)	154, 416
SspMI	CTAG	2 cut(s)	360, 678
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	584
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	202, 219
TasI	AATT	3 cut(s)	36, 343, 640
Tru1I	TTAA	3 cut(s)	302, 432, 606
Tru9I	TTAA	3 cut(s)	302, 432, 606
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	651
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	3 cut(s)	36, 343, 640
XceI	RCATGY	1 cut(s)	624
XhoI	CTCGAG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	2 cut(s)	360, 678
ZraI	GACGTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.