Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

15457934 .. 15458356

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG090100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGACTGCTTGAAAGAGAAGACGGCGTTTGATGTGAAGCTTGATTCTTGGTGGGCATTCAAAAGAGGCGCTGTAGCATTTGAGACCCTATGCCAAGACCACTCCGCTTCTTTCCCCCCTCACAAATTCACATTTCTTCCTATTCTCAAAGCCTGTGCCAAGTTCCGATCAGCCCCTCAAGTCCAAATGGTCCACACCCATCTCCTCAAAATAGGGTTCTTCTCCGACGTCTACGCAGCCACTGCTCTCACGGACGCTTCCATGAAGCTCAACCTCATGGACGATGCACTCAAGGTGTTCGACGAAATGCCTCACCGAAACTTGGCTCCCGTAAACACTGTGATTTCCGGGTTGTTGCATAATGGACATCGCAGAGAGGCTTTAAAGGTGTGCAAGAGCGTTGGTTTGGAGGGCTCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

140

Amino Acids

15.61

Weight (kDa)

8.72

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	13, 61
AluBI	AGCT	2 cut(s)	40, 268
AluI	AGCT	2 cut(s)	40, 268
Alw26I	GTCTC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	26
BpuEI	CTTGAG	2 cut(s)	162, 275
BpuMI	CCSGG	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	77
BssMI	GATC	1 cut(s)	167
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	170
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	240, 336
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	1 cut(s)	263
CviAII	CATG	2 cut(s)	262, 277
CviJI	RGCY	8 cut(s)	40, 152, 173, 239, 268, 326, 380, 414
CviKI_1	RGCY	8 cut(s)	40, 152, 173, 239, 268, 326, 380, 414
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
DraI	TTTAAA	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	416
FaeI	CATG	2 cut(s)	265, 280
FaiI	YATR	4 cut(s)	91, 263, 278, 360
FatI	CATG	2 cut(s)	261, 276
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	237
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	72
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	265, 280
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	3 cut(s)	193, 232, 334
Hpy188I	TCNGA	2 cut(s)	167, 226
Hpy8I	GTNNAC	3 cut(s)	193, 232, 334
Hpy99I	CGWCG	2 cut(s)	230, 305
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	287, 358, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	265, 280
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	2 cut(s)	166, 361
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	228
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	3 cut(s)	31, 128, 211
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	8 cut(s)	59, 129, 186, 215, 284, 321, 370, 403
MseI	TTAA	1 cut(s)	383
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	265, 280
NlaIV	GGNNCC	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	415
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	190
PspXI	VCTCGAGB	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	6 cut(s)	42, 231, 270, 276, 297, 390
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	415
SinI	GGWCC	1 cut(s)	190
SlaI	CTCGAG	1 cut(s)	415
SmlI	CTYRAG	3 cut(s)	177, 290, 415
SmoI	CTYRAG	3 cut(s)	177, 290, 415
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	300, 416
TasI	AATT	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	2 cut(s)	247, 343
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	247, 343
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	231
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.