Pentatricopeptide repeat domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 236 |
| AcsI | RAATTY | 2 cut(s) | 163, 301 |
| AfaI | GTAC | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 61 |
| AflIII | ACRYGT | 1 cut(s) | 33 |
| AgsI | TTSAA | 2 cut(s) | 163, 306 |
| AluBI | AGCT | 3 cut(s) | 7, 179, 244 |
| AluI | AGCT | 3 cut(s) | 7, 179, 244 |
| Ama87I | CYCGRG | 2 cut(s) | 155, 245 |
| ApoI | RAATTY | 2 cut(s) | 163, 301 |
| AsuC2I | CCSGG | 1 cut(s) | 88 |
| AsuHPI | GGTGA | 1 cut(s) | 250 |
| AvaI | CYCGRG | 2 cut(s) | 155, 245 |
| BanII | GRGCYC | 1 cut(s) | 156 |
| BccI | CCATC | 1 cut(s) | 211 |
| BcnI | CCSGG | 1 cut(s) | 88 |
| BfaI | CTAG | 1 cut(s) | 180 |
| BfmI | CTRYAG | 1 cut(s) | 174 |
| Bme1390I | CCNGG | 1 cut(s) | 88 |
| BmeT110I | CYCGRG | 2 cut(s) | 155, 245 |
| BmiI | GGNNCC | 1 cut(s) | 66 |
| BmrFI | CCNGG | 1 cut(s) | 88 |
| BpuMI | CCSGG | 1 cut(s) | 88 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseGI | GGATG | 1 cut(s) | 222 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseMII | CTCAG | 1 cut(s) | 291 |
| BsiHKCI | CYCGRG | 2 cut(s) | 155, 245 |
| BsiSI | CCGG | 1 cut(s) | 87 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BsoBI | CYCGRG | 2 cut(s) | 155, 245 |
| Bsp1286I | GDGCHC | 1 cut(s) | 156 |
| BspACI | CCGC | 1 cut(s) | 236 |
| BspCNI | CTCAG | 1 cut(s) | 290 |
| BspLI | GGNNCC | 1 cut(s) | 66 |
| Bst4CI | ACNGT | 1 cut(s) | 79 |
| Bst6I | CTCTTC | 1 cut(s) | 281 |
| BstDEI | CTNAG | 1 cut(s) | 277 |
| BstF5I | GGATG | 1 cut(s) | 222 |
| BstSCI | CCNGG | 1 cut(s) | 86 |
| BstSFI | CTRYAG | 1 cut(s) | 174 |
| BtgZI | GCGATG | 1 cut(s) | 92 |
| BtsCI | GGATG | 1 cut(s) | 222 |
| BtsIMutI | CAGTG | 1 cut(s) | 75 |
| Csp6I | GTAC | 1 cut(s) | 297 |
| CviAII | CATG | 1 cut(s) | 16 |
| CviJI | RGCY | 6 cut(s) | 7, 65, 119, 154, 179, 244 |
| CviKI_1 | RGCY | 6 cut(s) | 7, 65, 119, 154, 179, 244 |
| CviQI | GTAC | 1 cut(s) | 297 |
| DdeI | CTNAG | 1 cut(s) | 277 |
| DraI | TTTAAA | 1 cut(s) | 123 |
| Eam1104I | CTCTTC | 1 cut(s) | 281 |
| EarI | CTCTTC | 1 cut(s) | 281 |
| Eco24I | GRGCYC | 1 cut(s) | 156 |
| Eco88I | CYCGRG | 2 cut(s) | 155, 245 |
| EcoRI | GAATTC | 1 cut(s) | 163 |
| EcoT38I | GRGCYC | 1 cut(s) | 156 |
| FaeI | CATG | 1 cut(s) | 19 |
| FaiI | YATR | 7 cut(s) | 17, 71, 99, 113, 176, 267, 294 |
| FatI | CATG | 1 cut(s) | 15 |
| FokI | GGATG | 1 cut(s) | 229 |
| FriOI | GRGCYC | 1 cut(s) | 156 |
| FspBI | CTAG | 1 cut(s) | 180 |
| HapII | CCGG | 1 cut(s) | 87 |
| Hin1II | CATG | 1 cut(s) | 19 |
| HpaII | CCGG | 1 cut(s) | 87 |
| HphI | GGTGA | 1 cut(s) | 250 |
| Hpy99I | CGWCG | 1 cut(s) | 44 |
| HpyCH4III | ACNGT | 1 cut(s) | 79 |
| HpyCH4IV | ACGT | 1 cut(s) | 33 |
| HpyCH4V | TGCA | 3 cut(s) | 26, 97, 132 |
| HpyF3I | CTNAG | 1 cut(s) | 277 |
| HpySE526I | ACGT | 1 cut(s) | 33 |
| Hsp92II | CATG | 1 cut(s) | 19 |
| LmnI | GCTCC | 1 cut(s) | 70 |
| LpnPI | CCDG | 1 cut(s) | 100 |
| MaeI | CTAG | 1 cut(s) | 180 |
| MaeII | ACGT | 1 cut(s) | 33 |
| MaeIII | GTNAC | 2 cut(s) | 197, 313 |
| MboII | GAAGA | 1 cut(s) | 298 |
| MhlI | GDGCHC | 1 cut(s) | 156 |
| MluCI | AATT | 3 cut(s) | 163, 301, 334 |
| MnlI | CCTC | 5 cut(s) | 23, 60, 109, 143, 286 |
| MseI | TTAA | 1 cut(s) | 122 |
| MspI | CCGG | 1 cut(s) | 87 |
| MspR9I | CCNGG | 1 cut(s) | 88 |
| NciI | CCSGG | 1 cut(s) | 88 |
| NlaIII | CATG | 1 cut(s) | 19 |
| NlaIV | GGNNCC | 1 cut(s) | 66 |
| NmuCI | GTSAC | 1 cut(s) | 197 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 39 |
| PspN4I | GGNNCC | 1 cut(s) | 66 |
| RsaI | GTAC | 1 cut(s) | 298 |
| RsaNI | GTAC | 1 cut(s) | 297 |
| SaqAI | TTAA | 1 cut(s) | 122 |
| ScrFI | CCNGG | 1 cut(s) | 88 |
| SduI | GDGCHC | 1 cut(s) | 156 |
| SetI | ASST | 7 cut(s) | 9, 15, 36, 129, 181, 246, 278 |
| SfcI | CTRYAG | 1 cut(s) | 174 |
| Sse9I | AATT | 3 cut(s) | 163, 301, 334 |
| SsiI | CCGC | 1 cut(s) | 236 |
| SspMI | CTAG | 1 cut(s) | 180 |
| StyD4I | CCNGG | 1 cut(s) | 86 |
| TaaI | ACNGT | 1 cut(s) | 79 |
| TaiI | ACGT | 1 cut(s) | 36 |
| TaqI | TCGA | 1 cut(s) | 39 |
| TasI | AATT | 3 cut(s) | 163, 301, 334 |
| Tru1I | TTAA | 1 cut(s) | 122 |
| Tru9I | TTAA | 1 cut(s) | 122 |
| TscAI | CASTG | 1 cut(s) | 82 |
| TseFI | GTSAC | 1 cut(s) | 197 |
| Tsp45I | GTSAC | 1 cut(s) | 197 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 82 |
| XapI | RAATTY | 2 cut(s) | 163, 301 |
| XspI | CTAG | 1 cut(s) | 180 |