Pentatricopeptide repeat domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 95 |
| Acc16I | TGCGCA | 2 cut(s) | 525, 853 |
| Acc36I | ACCTGC | 2 cut(s) | 334, 1143 |
| AccB1I | GGYRCC | 3 cut(s) | 677, 1226, 1306 |
| AccI | GTMKAC | 2 cut(s) | 845, 1477 |
| AciI | CCGC | 3 cut(s) | 15, 120, 1463 |
| AclWI | GGATC | 2 cut(s) | 887, 1312 |
| AcsI | RAATTY | 5 cut(s) | 365, 563, 598, 861, 1502 |
| AcyI | GRCGYC | 1 cut(s) | 92 |
| AfaI | GTAC | 3 cut(s) | 262, 827, 990 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 594 |
| AflIII | ACRYGT | 2 cut(s) | 411, 822 |
| AjnI | CCWGG | 1 cut(s) | 1408 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 741, 773 |
| AluBI | AGCT | 7 cut(s) | 61, 180, 439, 547, 559, 644, 674 |
| AluI | AGCT | 7 cut(s) | 61, 180, 439, 547, 559, 644, 674 |
| AlwI | GGATC | 2 cut(s) | 887, 1312 |
| Ama87I | CYCGRG | 1 cut(s) | 1167 |
| ApeKI | GCWGC | 3 cut(s) | 436, 1001, 1337 |
| ApoI | RAATTY | 5 cut(s) | 365, 563, 598, 861, 1502 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 94, 126 |
| AspLEI | GCGC | 2 cut(s) | 526, 854 |
| AspS9I | GGNCC | 2 cut(s) | 777, 1405 |
| AsuC2I | CCSGG | 1 cut(s) | 1304 |
| AsuHPI | GGTGA | 1 cut(s) | 278 |
| AsuII | TTCGAA | 3 cut(s) | 113, 567, 1325 |
| AvaI | CYCGRG | 1 cut(s) | 1167 |
| AvaII | GGWCC | 2 cut(s) | 777, 1405 |
| BaeGI | GKGCMC | 1 cut(s) | 768 |
| BanI | GGYRCC | 3 cut(s) | 677, 1226, 1306 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 972, 1004 |
| BbsI | GAAGAC | 2 cut(s) | 701, 1010 |
| BbvI | GCAGC | 3 cut(s) | 448, 988, 1324 |
| BccI | CCATC | 2 cut(s) | 863, 1053 |
| BceAI | ACGGC | 3 cut(s) | 46, 524, 665 |
| BciT130I | CCWGG | 1 cut(s) | 1410 |
| BclI | TGATCA | 1 cut(s) | 606 |
| BcnI | CCSGG | 1 cut(s) | 1304 |
| BfaI | CTAG | 6 cut(s) | 315, 464, 560, 626, 1223, 1289 |
| BfmI | CTRYAG | 2 cut(s) | 740, 1478 |
| BfuAI | ACCTGC | 2 cut(s) | 334, 1143 |
| BisI | GCNGC | 3 cut(s) | 437, 1002, 1338 |
| BlsI | GCNGC | 3 cut(s) | 438, 1003, 1339 |
| BmcAI | AGTACT | 1 cut(s) | 990 |
| Bme1390I | CCNGG | 2 cut(s) | 1304, 1410 |
| Bme18I | GGWCC | 2 cut(s) | 777, 1405 |
| BmeT110I | CYCGRG | 1 cut(s) | 1167 |
| BmgT120I | GGNCC | 2 cut(s) | 777, 1405 |
| BmiI | GGNNCC | 5 cut(s) | 219, 679, 1228, 1308, 1407 |
| BmrFI | CCNGG | 2 cut(s) | 1304, 1410 |
| BmrI | ACTGGG | 2 cut(s) | 681, 1265 |
| BmsI | GCATC | 2 cut(s) | 1348, 1435 |
| BmuI | ACTGGG | 2 cut(s) | 681, 1265 |
| BpiI | GAAGAC | 2 cut(s) | 701, 1010 |
| Bpu14I | TTCGAA | 3 cut(s) | 113, 567, 1325 |
| BpuMI | CCSGG | 1 cut(s) | 1304 |
| BsaHI | GRCGYC | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 1 cut(s) | 1408 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 594 |
| Bse1I | ACTGG | 6 cut(s) | 687, 1045, 1153, 1260, 1295, 1434 |
| Bse3DI | GCAATG | 2 cut(s) | 43, 796 |
| BseBI | CCWGG | 1 cut(s) | 1410 |
| BseDI | CCNNGG | 1 cut(s) | 1408 |
| BseGI | GGATG | 5 cut(s) | 241, 1064, 1080, 1165, 1363 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 594 |
| BseMI | GCAATG | 2 cut(s) | 43, 796 |
| BseMII | CTCAG | 2 cut(s) | 129, 522 |
| BseNI | ACTGG | 6 cut(s) | 687, 1045, 1153, 1260, 1295, 1434 |
| BseSI | GKGCMC | 1 cut(s) | 768 |
| BseXI | GCAGC | 3 cut(s) | 448, 988, 1324 |
| BseYI | CCCAGC | 1 cut(s) | 61 |
| BsgI | GTGCAG | 4 cut(s) | 42, 744, 1051, 1323 |
| BshNI | GGYRCC | 3 cut(s) | 677, 1226, 1306 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1167 |
| BsiSI | CCGG | 2 cut(s) | 507, 1304 |
| BslFI | GGGAC | 4 cut(s) | 103, 668, 1391, 1476 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 594 |
| BsmFI | GGGAC | 4 cut(s) | 103, 668, 1391, 1476 |
| BsmI | GAATGC | 6 cut(s) | 499, 526, 541, 669, 953, 1241 |
| BsoBI | CYCGRG | 1 cut(s) | 1167 |
| Bsp119I | TTCGAA | 3 cut(s) | 113, 567, 1325 |
| Bsp1286I | GDGCHC | 1 cut(s) | 768 |
| Bsp1407I | TGTACA | 2 cut(s) | 260, 825 |
| Bsp143I | GATC | 6 cut(s) | 501, 606, 793, 892, 1132, 1317 |
| BspACI | CCGC | 3 cut(s) | 15, 120, 1463 |
| BspCNI | CTCAG | 2 cut(s) | 130, 523 |
| BspLI | GGNNCC | 5 cut(s) | 219, 679, 1228, 1308, 1407 |
| BspMAI | CTGCAG | 1 cut(s) | 744 |
| BspMI | ACCTGC | 2 cut(s) | 334, 1143 |
| BspPI | GGATC | 2 cut(s) | 887, 1312 |
| BspT104I | TTCGAA | 3 cut(s) | 113, 567, 1325 |
| BspT107I | GGYRCC | 3 cut(s) | 677, 1226, 1306 |
| BsrDI | GCAATG | 2 cut(s) | 43, 796 |
| BsrGI | TGTACA | 2 cut(s) | 260, 825 |
| BsrI | ACTGG | 6 cut(s) | 687, 1045, 1153, 1260, 1295, 1434 |
| BssECI | CCNNGG | 1 cut(s) | 1408 |
| BssMI | GATC | 6 cut(s) | 501, 606, 793, 892, 1132, 1317 |
| BssNI | GRCGYC | 1 cut(s) | 92 |
| Bst2UI | CCWGG | 1 cut(s) | 1410 |
| Bst4CI | ACNGT | 2 cut(s) | 353, 1482 |
| BstACI | GRCGYC | 1 cut(s) | 92 |
| BstAUI | TGTACA | 2 cut(s) | 260, 825 |
| BstBI | TTCGAA | 3 cut(s) | 113, 567, 1325 |
| BstC8I | GCNNGC | 4 cut(s) | 13, 341, 441, 768 |
| BstDEI | CTNAG | 2 cut(s) | 138, 531 |
| BstF5I | GGATG | 5 cut(s) | 241, 1064, 1080, 1165, 1363 |
| BstHHI | GCGC | 2 cut(s) | 526, 854 |
| BstKTI | GATC | 6 cut(s) | 504, 609, 796, 895, 1135, 1320 |
| BstMBI | GATC | 6 cut(s) | 501, 606, 793, 892, 1132, 1317 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 72, 503, 1211 |
| BstNI | CCWGG | 1 cut(s) | 1410 |
| BstNSI | RCATGY | 3 cut(s) | 261, 415, 826 |
| BstSCI | CCNGG | 2 cut(s) | 1302, 1408 |
| BstSFI | CTRYAG | 2 cut(s) | 740, 1478 |
| BstSLI | GKGCMC | 1 cut(s) | 768 |
| BstV1I | GCAGC | 3 cut(s) | 448, 988, 1324 |
| BstV2I | GAAGAC | 2 cut(s) | 701, 1010 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 903 |
| BtgZI | GCGATG | 1 cut(s) | 90 |
| BtsCI | GGATG | 5 cut(s) | 241, 1064, 1080, 1165, 1363 |
| BtsI | GCAGTG | 2 cut(s) | 60, 749 |
| BtsIMutI | CAGTG | 5 cut(s) | 60, 616, 749, 1038, 1302 |
| BveI | ACCTGC | 2 cut(s) | 334, 1143 |
| Cac8I | GCNNGC | 4 cut(s) | 13, 341, 441, 768 |
| CfoI | GCGC | 2 cut(s) | 526, 854 |
| Cfr13I | GGNCC | 2 cut(s) | 777, 1405 |
| Csp6I | GTAC | 3 cut(s) | 261, 826, 989 |
| CviQI | GTAC | 3 cut(s) | 261, 826, 989 |
| DdeI | CTNAG | 2 cut(s) | 138, 531 |
| DpnI | GATC | 6 cut(s) | 503, 608, 795, 894, 1134, 1319 |
| DpnII | GATC | 6 cut(s) | 501, 606, 793, 892, 1132, 1317 |
| DraI | TTTAAA | 2 cut(s) | 693, 1275 |
| Eco32I | GATATC | 1 cut(s) | 6 |
| Eco47I | GGWCC | 2 cut(s) | 777, 1405 |
| Eco88I | CYCGRG | 1 cut(s) | 1167 |
| EcoO109I | RGGNCCY | 2 cut(s) | 777, 1405 |
| EcoRI | GAATTC | 2 cut(s) | 563, 598 |
| EcoRII | CCWGG | 1 cut(s) | 1408 |
| EcoRV | GATATC | 1 cut(s) | 6 |
| EcoT22I | ATGCAT | 1 cut(s) | 45 |
| FaqI | GGGAC | 4 cut(s) | 103, 668, 1391, 1476 |
| FauI | CCCGC | 1 cut(s) | 8 |
| FbaI | TGATCA | 1 cut(s) | 606 |
| FblI | GTMKAC | 2 cut(s) | 845, 1477 |
| Fnu4HI | GCNGC | 3 cut(s) | 437, 1002, 1338 |
| FokI | GGATG | 5 cut(s) | 248, 1071, 1087, 1172, 1370 |
| Fsp4HI | GCNGC | 3 cut(s) | 437, 1002, 1338 |
| FspBI | CTAG | 6 cut(s) | 315, 464, 560, 626, 1223, 1289 |
| FspI | TGCGCA | 2 cut(s) | 525, 853 |
| GlaI | GCGC | 2 cut(s) | 525, 853 |
| GluI | GCNGC | 3 cut(s) | 437, 1002, 1338 |
| GsaI | CCCAGC | 1 cut(s) | 65 |
| HapII | CCGG | 2 cut(s) | 507, 1304 |
| HhaI | GCGC | 2 cut(s) | 526, 854 |
| Hin1I | GRCGYC | 1 cut(s) | 92 |
| Hin6I | GCGC | 2 cut(s) | 524, 852 |
| HinP1I | GCGC | 2 cut(s) | 524, 852 |
| HincII | GTYRAC | 1 cut(s) | 70 |
| HindII | GTYRAC | 1 cut(s) | 70 |
| HindIII | AAGCTT | 1 cut(s) | 642 |
| HinfI | GANTC | 5 cut(s) | 584, 947, 960, 1247, 1489 |
| HpaII | CCGG | 2 cut(s) | 507, 1304 |
| HphI | GGTGA | 1 cut(s) | 278 |
| Hpy166II | GTNNAC | 8 cut(s) | 70, 349, 409, 486, 846, 1051, 1300, 1478 |
| Hpy188I | TCNGA | 5 cut(s) | 102, 332, 959, 1252, 1285 |
| Hpy188III | TCNNGA | 4 cut(s) | 166, 1109, 1200, 1315 |
| Hpy8I | GTNNAC | 8 cut(s) | 70, 349, 409, 486, 846, 1051, 1300, 1478 |
| Hpy99I | CGWCG | 2 cut(s) | 97, 893 |
| HpyAV | CCTTC | 4 cut(s) | 136, 563, 1206, 1341 |
| HpyCH4III | ACNGT | 2 cut(s) | 353, 1482 |
| HpyCH4IV | ACGT | 2 cut(s) | 92, 287 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 72, 503, 1211 |
| HpyF3I | CTNAG | 2 cut(s) | 138, 531 |
| HpySE526I | ACGT | 2 cut(s) | 92, 287 |
| Hsp92I | GRCGYC | 1 cut(s) | 92 |
| HspAI | GCGC | 2 cut(s) | 524, 852 |
| Ksp22I | TGATCA | 1 cut(s) | 606 |
| Kzo9I | GATC | 6 cut(s) | 501, 606, 793, 892, 1132, 1317 |
| Lsp1109I | GCAGC | 3 cut(s) | 448, 988, 1324 |
| LweI | GCATC | 2 cut(s) | 1348, 1435 |
| MaeI | CTAG | 6 cut(s) | 315, 464, 560, 626, 1223, 1289 |
| MaeII | ACGT | 2 cut(s) | 92, 287 |
| MaeIII | GTNAC | 2 cut(s) | 589, 1034 |
| MalI | GATC | 6 cut(s) | 503, 608, 795, 894, 1134, 1319 |
| MboI | GATC | 6 cut(s) | 501, 606, 793, 892, 1132, 1317 |
| MboII | GAAGA | 8 cut(s) | 701, 870, 942, 992, 1010, 1193, 1339, 1410 |
| MhlI | GDGCHC | 1 cut(s) | 768 |
| MluCI | AATT | 8 cut(s) | 277, 365, 563, 598, 861, 1184, 1466, 1502 |
| MlyI | GAGTC | 1 cut(s) | 1498 |
| MmeI | TCCRAC | 3 cut(s) | 213, 957, 1137 |
| MnlI | CCTC | 4 cut(s) | 231, 790, 1348, 1367 |
| Mph1103I | ATGCAT | 1 cut(s) | 45 |
| MseI | TTAA | 6 cut(s) | 150, 243, 657, 692, 1274, 1424 |
| MslI | CAYNNNNRTG | 2 cut(s) | 38, 827 |
| MspA1I | CMGCKG | 2 cut(s) | 439, 674 |
| MspI | CCGG | 2 cut(s) | 507, 1304 |
| MspR9I | CCNGG | 2 cut(s) | 1304, 1410 |
| Mva1269I | GAATGC | 6 cut(s) | 499, 526, 541, 669, 953, 1241 |
| MvaI | CCWGG | 1 cut(s) | 1410 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 72, 503, 1211 |
| NciI | CCSGG | 1 cut(s) | 1304 |
| NdeII | GATC | 6 cut(s) | 501, 606, 793, 892, 1132, 1317 |
| NlaIV | GGNNCC | 5 cut(s) | 219, 679, 1228, 1308, 1407 |
| NmuCI | GTSAC | 1 cut(s) | 1034 |
| NsbI | TGCGCA | 2 cut(s) | 525, 853 |
| NsiI | ATGCAT | 1 cut(s) | 45 |
| NspI | RCATGY | 3 cut(s) | 261, 415, 826 |
| NspV | TTCGAA | 3 cut(s) | 113, 567, 1325 |
| PciI | ACATGT | 2 cut(s) | 411, 822 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 357 |
| PctI | GAATGC | 6 cut(s) | 499, 526, 541, 669, 953, 1241 |
| PfeI | GAWTC | 4 cut(s) | 584, 947, 960, 1247 |
| PkrI | GCNGC | 3 cut(s) | 438, 1003, 1339 |
| PleI | GAGTC | 1 cut(s) | 1497 |
| PpsI | GAGTC | 1 cut(s) | 1497 |
| PpuMI | RGGWCCY | 2 cut(s) | 777, 1405 |
| PscI | ACATGT | 2 cut(s) | 411, 822 |
| Psp5II | RGGWCCY | 2 cut(s) | 777, 1405 |
| Psp6I | CCWGG | 1 cut(s) | 1408 |
| PspFI | CCCAGC | 1 cut(s) | 61 |
| PspGI | CCWGG | 1 cut(s) | 1408 |
| PspN4I | GGNNCC | 5 cut(s) | 219, 679, 1228, 1308, 1407 |
| PspPI | GGNCC | 2 cut(s) | 777, 1405 |
| PspPPI | RGGWCCY | 2 cut(s) | 777, 1405 |
| PstI | CTGCAG | 1 cut(s) | 744 |
| PvuII | CAGCTG | 2 cut(s) | 439, 674 |
| RsaI | GTAC | 3 cut(s) | 262, 827, 990 |
| RsaNI | GTAC | 3 cut(s) | 261, 826, 989 |
| RseI | CAYNNNNRTG | 2 cut(s) | 38, 827 |
| SaqAI | TTAA | 6 cut(s) | 150, 243, 657, 692, 1274, 1424 |
| SatI | GCNGC | 3 cut(s) | 437, 1002, 1338 |
| Sau3AI | GATC | 6 cut(s) | 501, 606, 793, 892, 1132, 1317 |
| Sau96I | GGNCC | 2 cut(s) | 777, 1405 |
| ScaI | AGTACT | 1 cut(s) | 990 |
| SchI | GAGTC | 1 cut(s) | 1498 |
| ScrFI | CCNGG | 2 cut(s) | 1304, 1410 |
| SduI | GDGCHC | 1 cut(s) | 768 |
| SfaNI | GCATC | 2 cut(s) | 1348, 1435 |
| SfcI | CTRYAG | 2 cut(s) | 740, 1478 |
| SfuI | TTCGAA | 3 cut(s) | 113, 567, 1325 |
| SinI | GGWCC | 2 cut(s) | 777, 1405 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 38, 827 |
| Sse9I | AATT | 8 cut(s) | 277, 365, 563, 598, 861, 1184, 1466, 1502 |
| SsiI | CCGC | 3 cut(s) | 15, 120, 1463 |
| SspMI | CTAG | 6 cut(s) | 315, 464, 560, 626, 1223, 1289 |
| StyD4I | CCNGG | 2 cut(s) | 1302, 1408 |
| TaaI | ACNGT | 2 cut(s) | 353, 1482 |
| TaiI | ACGT | 2 cut(s) | 95, 290 |
| TaqI | TCGA | 5 cut(s) | 113, 567, 877, 1144, 1325 |
| TasI | AATT | 8 cut(s) | 277, 365, 563, 598, 861, 1184, 1466, 1502 |
| TatI | WGTACW | 3 cut(s) | 260, 825, 988 |
| TfiI | GAWTC | 4 cut(s) | 584, 947, 960, 1247 |
| Tru1I | TTAA | 6 cut(s) | 150, 243, 657, 692, 1274, 1424 |
| Tru9I | TTAA | 6 cut(s) | 150, 243, 657, 692, 1274, 1424 |
| TscAI | CASTG | 5 cut(s) | 60, 616, 749, 1045, 1302 |
| TseFI | GTSAC | 1 cut(s) | 1034 |
| TseI | GCWGC | 3 cut(s) | 436, 1001, 1337 |
| Tsp45I | GTSAC | 1 cut(s) | 1034 |
| TspDTI | ATGAA | 7 cut(s) | 483, 749, 790, 845, 1094, 1176, 1397 |
| TspGWI | ACGGA | 2 cut(s) | 577, 951 |
| TspRI | CASTG | 5 cut(s) | 60, 616, 749, 1045, 1302 |
| VpaK11BI | GGWCC | 2 cut(s) | 777, 1405 |
| XapI | RAATTY | 5 cut(s) | 365, 563, 598, 861, 1502 |
| XceI | RCATGY | 3 cut(s) | 261, 415, 826 |
| XmiI | GTMKAC | 2 cut(s) | 845, 1477 |
| XspI | CTAG | 6 cut(s) | 315, 464, 560, 626, 1223, 1289 |
| ZraI | GACGTC | 1 cut(s) | 93 |
| ZrmI | AGTACT | 1 cut(s) | 990 |
| Zsp2I | ATGCAT | 1 cut(s) | 45 |