Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

43078277 .. 43079533

Gene Structure 1257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG303800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCGACATTGGGACTTAAAGGAGAACGGCGTCGTTTTTGTTGTGTTGAATAATCAGGACTTAAAGGAGCTGCCTTCTTCGTTGCCCATAAGCTCCGAGGCTCAATTTTACCTGGAGGCACATGGCCCACAGCTGCCGGGGTCGAACTTTGATCAGCCCTACATGCAACGCGGAACCCAGAAGACGACATTTGATATGAAGCTTAGTTCTTGGTGGGCACCCATAGGAAGCACTGTAGCATTTGAGACCCTATGCCAAGACCACTCTGCTTCTTTTCCCCCTCATAAATTCACATTTCCTCCTATTCTCAAAGCCTGTGCCAAGCTCCTATCAGCCCCTCAAGTCCAAATGGTCCACACCCATCTCCTGAAAATTGGGTTCTTCTCCGACATCTACACTATCACCGCTCTCATGGACTCTTCCATGAAGCTCAACCTCATGGACTCTTCCATGAAGCTCAACCTCATGGACGATGCACTCAAGGTGCATGATTTGATCATGAAAGATGATGGTATCGGCGTTGGAGTTCGGATGCGGTGGAGGAGGGCGTGTGTTGAATCGATTTGGCTTTTAGGCTTGGGAGATCTGAGAGAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

199

Amino Acids

22.57

Weight (kDa)

6.64

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AccBSI	CCGCTC	1 cut(s)	407
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	171, 405, 535
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	49, 557
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	7 cut(s)	70, 93, 133, 202, 325, 430, 457
AluI	AGCT	7 cut(s)	70, 93, 133, 202, 325, 430, 457
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	70, 133
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	125, 352
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	57, 120
BccI	CCATC	2 cut(s)	369, 503
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	2 cut(s)	151, 495
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	234
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	2 cut(s)	71, 134
BlsI	GCNGC	2 cut(s)	72, 135
Bme1390I	CCNGG	2 cut(s)	113, 138
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	125, 352
BmiI	GGNNCC	2 cut(s)	175, 219
BmrFI	CCNGG	2 cut(s)	113, 138
BmsI	GCATC	2 cut(s)	463, 522
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	2 cut(s)	324, 464
BpuMI	CCSGG	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	96, 137
BsaXI	ACNNNNNCTCC	4 cut(s)	283, 313, 535, 565
BseBI	CCWGG	1 cut(s)	113
BseCI	ATCGAT	1 cut(s)	560
BseDI	CCNNGG	2 cut(s)	96, 137
BseGI	GGATG	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	578
BseRI	GAGGAG	1 cut(s)	556
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	57, 120
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	217
BshVI	ATCGAT	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	151, 495, 583
BspACI	CCGC	3 cut(s)	171, 405, 535
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	579
BspDI	ATCGAT	1 cut(s)	560
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	175, 219
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	96, 137
BssMI	GATC	3 cut(s)	151, 495, 583
BssNI	GRCGYC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	424, 451
BstACI	GRCGYC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	203, 587
BstF5I	GGATG	1 cut(s)	537
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	3 cut(s)	154, 498, 586
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	3 cut(s)	151, 495, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	111, 136
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	57, 120
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu15I	ATCGAT	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	560
BtsCI	GGATG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	231
CciI	TCATGA	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	125, 352
ClaI	ATCGAT	1 cut(s)	560
CseI	GACGC	1 cut(s)	19
CviAII	CATG	9 cut(s)	122, 163, 412, 424, 439, 451, 466, 488, 499
DdeI	CTNAG	2 cut(s)	203, 587
DpnI	GATC	3 cut(s)	153, 497, 585
DpnII	GATC	3 cut(s)	151, 495, 583
Eam1104I	CTCTTC	2 cut(s)	424, 451
EarI	CTCTTC	2 cut(s)	424, 451
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	111
FaeI	CATG	9 cut(s)	125, 166, 415, 427, 442, 454, 469, 491, 502
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	9 cut(s)	121, 162, 411, 423, 438, 450, 465, 487, 498
FbaI	TGATCA	2 cut(s)	151, 495
Fnu4HI	GCNGC	2 cut(s)	71, 134
FokI	GGATG	1 cut(s)	544
Fsp4HI	GCNGC	2 cut(s)	71, 134
GluI	GCNGC	2 cut(s)	71, 134
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	9 cut(s)	125, 166, 415, 427, 442, 454, 469, 491, 502
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	3 cut(s)	416, 443, 557
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	4 cut(s)	97, 388, 531, 588
Hpy188III	TCNNGA	3 cut(s)	56, 367, 499
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	166, 476, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	203, 587
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	9 cut(s)	125, 166, 415, 427, 442, 454, 469, 491, 502
Ksp22I	TGATCA	2 cut(s)	151, 495
Kzo9I	GATC	3 cut(s)	151, 495, 583
LmnI	GCTCC	3 cut(s)	67, 98, 330
LpnPI	CCDG	7 cut(s)	41, 98, 125, 150, 191, 328, 380
Lsp1109I	GCAGC	2 cut(s)	57, 120
LweI	GCATC	2 cut(s)	463, 522
MalI	GATC	3 cut(s)	153, 497, 585
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	3 cut(s)	151, 495, 583
MboII	GAAGA	5 cut(s)	69, 193, 373, 411, 438
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	3 cut(s)	104, 287, 372
MlyI	GAGTC	2 cut(s)	410, 437
MmeI	TCCRAC	2 cut(s)	411, 502
MseI	TTAA	2 cut(s)	17, 62
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	113, 138
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	151, 495, 583
NlaIII	CATG	9 cut(s)	125, 166, 415, 427, 442, 454, 469, 491, 502
NlaIV	GGNNCC	2 cut(s)	175, 219
NspI	RCATGY	1 cut(s)	166
PagI	TCATGA	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	72, 135
PleI	GAGTC	2 cut(s)	410, 437
PpsI	GAGTC	2 cut(s)	410, 437
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	175, 219
PspPI	GGNCC	2 cut(s)	125, 352
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	17, 62
SatI	GCNGC	2 cut(s)	71, 134
Sau3AI	GATC	3 cut(s)	151, 495, 583
Sau96I	GGNCC	2 cut(s)	125, 352
SchI	GAGTC	2 cut(s)	410, 437
ScrFI	CCNGG	2 cut(s)	113, 138
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	2 cut(s)	463, 522
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	339, 479
SmoI	CTYRAG	2 cut(s)	339, 479
Sse9I	AATT	3 cut(s)	104, 287, 372
SsiI	CCGC	3 cut(s)	171, 405, 535
StyD4I	CCNGG	2 cut(s)	111, 136
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	143, 560
TasI	AATT	3 cut(s)	104, 287, 372
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	17, 62
Tru9I	TTAA	2 cut(s)	17, 62
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	2 cut(s)	70, 133
TspDTI	ATGAA	4 cut(s)	212, 440, 467, 515
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.