Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

30856504 .. 30857826

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTTCCTCCCATTCAGCTGCCAGTTACACCACCGCCGCGCTGGAGAAAAGACCAGCCCCACCTAGAAGGGCAGCGATGCGGCATTAGGAAGGTGGAGGAGCACGGCGTCGTTTTTGTTGTGTTGAATAATCAAGACTCAAATGAGCTGCCTTCTTCGCTGTCCACGAGCTCCGAGGCTCAGTTTTACCCTGAGGCACATGGCCCACAGCTGCTGGGGTCGGACTTTGACCAGCCCTACATGCAACCAGGAACCCAGAAGACGACGTTTGATGTGAAGTTTGATTCTTGGTGGGCATTCATAAGAGGCGTTGTAGCATCTGAGACCCTATGCCAAGACCACTCCGCTTCTTTCCCCCCTCACAAATTCACATTTCCTCCTATTCTCAAAGCCTGTGCCAAGCTCCGATCAGCCCCTCAATTCCAAATGGTCCACACCCATCTCTTTAAAACCAGGTTCTTCTCTAACGTCTACGCAGCCACCGCTCTCACGGATGCTTCCATGAAGCTCAACCTCATGGACGATGCACTCAAGGTGTTTGATGAAATGCCTCACCGAAACTTGGCTCCCTTGCATAATGGACATCCCAGAGAGGCTTTAAAGGTGTGCAAGAGCGTTGGTTTTGGAAGGCTCAGGTTGAATTCGGTTACTATAGCTAGTGTGTTTTCGGCGTGTGACAATGCGAAGCAGGGGATACGAATGGATTGTGTGGCGGTGAAGCTCGTGGTTAAGAGTGATGTATATGTTGCTACCTCAGCTAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTATAGGCGAAAATCCGAATTCAGTGACATTGGTTTCAGTTCTTTCTGCTTGTACTAGTGTTTTGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

294

Amino Acids

32.53

Weight (kDa)

8.88

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	471
AccII	CGCG	1 cut(s)	40
AciI	CCGC	6 cut(s)	35, 38, 81, 345, 483, 713
AcsI	RAATTY	3 cut(s)	365, 640, 826
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	862
AfiI	CCNNNNNNNGG	1 cut(s)	562
AgsI	TTSAA	2 cut(s)	127, 640
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	2 cut(s)	247, 452
AluBI	AGCT	9 cut(s)	19, 148, 171, 211, 403, 508, 656, 721, 758
AluI	AGCT	9 cut(s)	19, 148, 171, 211, 403, 508, 656, 721, 758
Alw21I	GWGCWC	2 cut(s)	105, 173
Alw26I	GTCTC	1 cut(s)	317
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	5 cut(s)	19, 73, 148, 211, 476
ApoI	RAATTY	3 cut(s)	365, 640, 826
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	203, 430
AsuHPI	GGTGA	2 cut(s)	545, 727
AvaII	GGWCC	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	2 cut(s)	166, 722
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	2 cut(s)	105, 173
BbvCI	CCTCAGC	1 cut(s)	754
BbvI	GCAGC	5 cut(s)	6, 85, 135, 198, 488
BccI	CCATC	1 cut(s)	447
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	249, 454
BciVI	GTATCC	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	317
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	3 cut(s)	65, 657, 864
BfmI	CTRYAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	687
BisI	GCNGC	7 cut(s)	20, 38, 74, 82, 149, 212, 477
BlsI	GCNGC	7 cut(s)	21, 39, 75, 83, 150, 213, 478
Bme1390I	CCNGG	2 cut(s)	249, 454
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	203, 430
BmiI	GGNNCC	3 cut(s)	253, 567, 768
BmrFI	CCNGG	2 cut(s)	249, 454
BmsI	GCATC	4 cut(s)	68, 326, 484, 514
BpiI	GAAGAC	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	64
Bpu10I	CCTNAGC	2 cut(s)	632, 754
BpuEI	CTTGAG	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	174, 770
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	249, 454
BseDI	CCNNGG	2 cut(s)	174, 770
BseGI	GGATG	3 cut(s)	499, 583, 790
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	5 cut(s)	183, 194, 312, 646, 768
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	5 cut(s)	6, 85, 135, 198, 488
BseYI	CCCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	105, 173
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	105, 173
Bsp143I	GATC	1 cut(s)	407
BspACI	CCGC	6 cut(s)	35, 38, 81, 345, 483, 713
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	5 cut(s)	184, 193, 313, 645, 767
BspFNI	CGCG	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	253, 567, 768
BspTNI	GGTCTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	174, 770
BssMI	GATC	1 cut(s)	407
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	2 cut(s)	166, 722
BssT1I	CCWWGG	1 cut(s)	770
Bst2BI	CACGAG	2 cut(s)	166, 722
Bst2UI	CCWGG	2 cut(s)	249, 454
BstACI	GRCGYC	1 cut(s)	108
BstDEI	CTNAG	5 cut(s)	180, 192, 321, 632, 754
BstF5I	GGATG	3 cut(s)	499, 583, 790
BstFNI	CGCG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	1 cut(s)	410
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 241, 482, 755
BstNI	CCWGG	2 cut(s)	249, 454
BstNSI	RCATGY	2 cut(s)	244, 810
BstSCI	CCNGG	2 cut(s)	247, 452
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	5 cut(s)	6, 85, 135, 198, 488
BstV2I	GAAGAC	1 cut(s)	266
Bsu36I	CCTNAGG	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	3 cut(s)	499, 583, 790
BtsIMutI	CAGTG	1 cut(s)	837
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	203, 430
CseI	GACGC	1 cut(s)	97
CsiI	ACCWGGT	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	861
CviAII	CATG	5 cut(s)	200, 241, 502, 517, 807
CviQI	GTAC	1 cut(s)	861
DdeI	CTNAG	5 cut(s)	180, 192, 321, 632, 754
DpnI	GATC	1 cut(s)	409
DpnII	GATC	1 cut(s)	407
DraI	TTTAAA	2 cut(s)	448, 600
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	770
Eco24I	GRGCYC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	171
EcoRI	GAATTC	2 cut(s)	640, 826
EcoRII	CCWGG	2 cut(s)	247, 452
EcoT14I	CCWWGG	1 cut(s)	770
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	5 cut(s)	203, 244, 505, 520, 810
FatI	CATG	5 cut(s)	199, 240, 501, 516, 806
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	7 cut(s)	20, 38, 74, 82, 149, 212, 477
FokI	GGATG	3 cut(s)	506, 570, 797
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	7 cut(s)	20, 38, 74, 82, 149, 212, 477
FspBI	CTAG	3 cut(s)	65, 657, 864
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	7 cut(s)	20, 38, 74, 82, 149, 212, 477
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	204
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	5 cut(s)	203, 244, 505, 520, 810
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	137, 284
HphI	GGTGA	2 cut(s)	545, 727
Hpy166II	GTNNAC	3 cut(s)	165, 433, 472
Hpy188I	TCNGA	6 cut(s)	175, 223, 322, 407, 825, 881
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	3 cut(s)	165, 433, 472
Hpy99I	CGWCG	2 cut(s)	113, 268
HpyAV	CCTTC	4 cut(s)	62, 85, 162, 621
HpyCH4IV	ACGT	2 cut(s)	266, 468
HpyCH4V	TGCA	4 cut(s)	244, 527, 574, 609
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 241, 482, 755
HpyF3I	CTNAG	5 cut(s)	180, 192, 321, 632, 754
HpySE526I	ACGT	2 cut(s)	266, 468
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	5 cut(s)	203, 244, 505, 520, 810
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	407
LmnI	GCTCC	4 cut(s)	100, 176, 408, 571
Lsp1109I	GCAGC	5 cut(s)	6, 85, 135, 198, 488
LweI	GCATC	4 cut(s)	68, 326, 484, 514
MabI	ACCWGGT	1 cut(s)	452
MaeI	CTAG	3 cut(s)	65, 657, 864
MaeII	ACGT	2 cut(s)	266, 468
MaeIII	GTNAC	4 cut(s)	25, 646, 674, 832
MalI	GATC	1 cut(s)	409
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	1 cut(s)	407
MboII	GAAGA	3 cut(s)	147, 271, 451
MhlI	GDGCHC	2 cut(s)	105, 173
MluCI	AATT	4 cut(s)	365, 419, 640, 826
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	201, 762
MseI	TTAA	4 cut(s)	447, 599, 729, 792
MspA1I	CMGCKG	2 cut(s)	19, 211
MspR9I	CCNGG	2 cut(s)	249, 454
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	249, 454
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	4 cut(s)	157, 241, 482, 755
NdeII	GATC	1 cut(s)	407
NlaIII	CATG	5 cut(s)	203, 244, 505, 520, 810
NlaIV	GGNNCC	3 cut(s)	253, 567, 768
NmuCI	GTSAC	2 cut(s)	674, 832
NspI	RCATGY	2 cut(s)	244, 810
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	7 cut(s)	21, 39, 75, 83, 150, 213, 478
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	247, 452
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	2 cut(s)	247, 452
PspN4I	GGNNCC	3 cut(s)	253, 567, 768
PspPI	GGNCC	2 cut(s)	203, 430
PstNI	CAGNNNCTG	1 cut(s)	214
PvuII	CAGCTG	2 cut(s)	19, 211
RsaI	GTAC	1 cut(s)	862
RsaNI	GTAC	1 cut(s)	861
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	447, 599, 729, 792
SatI	GCNGC	7 cut(s)	20, 38, 74, 82, 149, 212, 477
Sau3AI	GATC	1 cut(s)	407
Sau96I	GGNCC	2 cut(s)	203, 430
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	249, 454
SduI	GDGCHC	2 cut(s)	105, 173
SexAI	ACCWGGT	1 cut(s)	452
SfaNI	GCATC	4 cut(s)	68, 326, 484, 514
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	4 cut(s)	365, 419, 640, 826
SsiI	CCGC	6 cut(s)	35, 38, 81, 345, 483, 713
SspMI	CTAG	3 cut(s)	65, 657, 864
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	247, 452
StyI	CCWWGG	1 cut(s)	770
TaiI	ACGT	2 cut(s)	269, 471
TasI	AATT	4 cut(s)	365, 419, 640, 826
TatI	WGTACW	1 cut(s)	860
TauI	GCSGC	2 cut(s)	40, 84
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	4 cut(s)	447, 599, 729, 792
Tru9I	TTAA	4 cut(s)	447, 599, 729, 792
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	2 cut(s)	674, 832
TseI	GCWGC	5 cut(s)	19, 73, 148, 211, 476
Tsp45I	GTSAC	2 cut(s)	674, 832
TspDTI	ATGAA	3 cut(s)	289, 518, 558
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	837
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	3 cut(s)	365, 640, 826
XceI	RCATGY	2 cut(s)	244, 810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	3 cut(s)	65, 657, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.