Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

32644531 .. 32645851

Gene Structure 1321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013526

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTTCCTCCTATTCTGCCGCTAGTTACACCACCGCCGCGCTGGAGAAAAGACCAGCGCCACGTAGAAGGTCTCAGTGATCACGGACGAGATCGGGGCTTACTCTGCTCGAGAGAGGCTTTAAAGGTGTGCAAGAATGTTGGTTTTGGAGGGCTCGGGTTGAATTTGGTTACTATACCTAGTGTGTTTTCGGCTTGTGACAATGCGAAGCAGGGGATGGGAATGGATTGCGTGGAGGTGATGCTCGGGGTTGAGAGTGATGTTTATGTTGCTACCTCAGCTGTGAGTATGTATTGGAGCTGTGGGGAGTTGGTTTTTGCTGCAAAGTTGTTTGAACATATGCCTGTCAAGAATGTGGTGAGCTATAATGCTTTTATAACAGAGCTTTTGCAGAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGGTTTTGGTTCTTTTTGCTTGTGCTAGTGTTTTGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

172

Amino Acids

18.78

Weight (kDa)

8.17

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	117 - 166	7.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AccII	CGCG	1 cut(s)	40
AciI	CCGC	3 cut(s)	20, 35, 38
AcsI	RAATTY	2 cut(s)	163, 460
AgsI	TTSAA	2 cut(s)	163, 335
AluBI	AGCT	4 cut(s)	281, 300, 363, 385
AluI	AGCT	4 cut(s)	281, 300, 363, 385
Alw26I	GTCTC	1 cut(s)	77
Ama87I	CYCGRG	3 cut(s)	109, 155, 245
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	163, 460
ArsI	GACNNNNNNTTYG	2 cut(s)	460, 492
AspLEI	GCGC	2 cut(s)	42, 60
AsuHPI	GGTGA	3 cut(s)	250, 370, 461
AvaI	CYCGRG	3 cut(s)	109, 155, 245
BanII	GRGCYC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	3 cut(s)	23, 180, 498
BfoI	RGCGCY	1 cut(s)	61
BisI	GCNGC	3 cut(s)	20, 38, 321
BlsI	GCNGC	3 cut(s)	21, 39, 322
BmeT110I	CYCGRG	3 cut(s)	109, 155, 245
BmiI	GGNNCC	1 cut(s)	402
BmsI	GCATC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	2 cut(s)	222, 424
BseMII	CTCAG	2 cut(s)	88, 291
BseXI	GCAGC	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	40
BsiHKCI	CYCGRG	3 cut(s)	109, 155, 245
BsmAI	GTCTC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	3 cut(s)	109, 155, 245
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	79, 91
BspACI	CCGC	3 cut(s)	20, 35, 38
BspCNI	CTCAG	2 cut(s)	87, 290
BspFNI	CGCG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	2 cut(s)	79, 91
BssT1I	CCWWGG	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	74, 277
BstF5I	GGATG	2 cut(s)	222, 424
BstFNI	CGCG	1 cut(s)	40
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	42, 60
BstKTI	GATC	2 cut(s)	82, 94
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	79, 91
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 278
BstNSI	RCATGY	1 cut(s)	444
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	222, 424
BtsIMutI	CAGTG	2 cut(s)	82, 471
CfoI	GCGC	2 cut(s)	42, 60
CviAII	CATG	1 cut(s)	441
CviJI	RGCY	8 cut(s)	99, 119, 154, 194, 281, 300, 363, 385
CviKI_1	RGCY	8 cut(s)	99, 119, 154, 194, 281, 300, 363, 385
DdeI	CTNAG	2 cut(s)	74, 277
DpnI	GATC	2 cut(s)	81, 93
DpnII	GATC	2 cut(s)	79, 91
DraI	TTTAAA	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	77
Eco88I	CYCGRG	3 cut(s)	109, 155, 245
EcoRI	GAATTC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	404
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	1 cut(s)	444
FaiI	YATR	8 cut(s)	176, 267, 290, 339, 341, 366, 377, 442
FatI	CATG	1 cut(s)	440
FauNDI	CATATG	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	20, 38, 321
FokI	GGATG	2 cut(s)	229, 431
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	20, 38, 321
FspBI	CTAG	3 cut(s)	23, 180, 498
GlaI	GCGC	2 cut(s)	41, 59
GluI	GCNGC	3 cut(s)	20, 38, 321
GsuI	CTGGAG	1 cut(s)	64
HaeII	RGCGCY	1 cut(s)	61
HhaI	GCGC	2 cut(s)	42, 60
Hin1II	CATG	1 cut(s)	444
Hin6I	GCGC	2 cut(s)	40, 58
HinP1I	GCGC	2 cut(s)	40, 58
HphI	GGTGA	3 cut(s)	250, 370, 461
Hpy188I	TCNGA	2 cut(s)	459, 515
Hpy188III	TCNNGA	2 cut(s)	111, 349
HpyAV	CCTTC	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	132, 323, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 278
HpyF3I	CTNAG	2 cut(s)	74, 277
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	444
HspAI	GCGC	2 cut(s)	40, 58
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	79, 91
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	4 cut(s)	28, 68, 197, 357
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	3 cut(s)	23, 180, 498
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	4 cut(s)	25, 169, 197, 466
MalI	GATC	2 cut(s)	81, 93
MboI	GATC	2 cut(s)	79, 91
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	2 cut(s)	163, 460
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	6 cut(s)	18, 109, 143, 229, 286, 440
MseI	TTAA	2 cut(s)	122, 426
MspA1I	CMGCKG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	105, 278
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	2 cut(s)	79, 91
NlaIII	CATG	1 cut(s)	444
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	197, 466
NspI	RCATGY	1 cut(s)	444
PaeR7I	CTCGAG	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	21, 39, 322
Ppu21I	YACGTR	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	402
PvuII	CAGCTG	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	122, 426
SatI	GCNGC	3 cut(s)	20, 38, 321
Sau3AI	GATC	2 cut(s)	79, 91
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	231
Sfr274I	CTCGAG	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	163, 460
SsiI	CCGC	3 cut(s)	20, 35, 38
SspMI	CTAG	3 cut(s)	23, 180, 498
StyI	CCWWGG	1 cut(s)	404
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	163, 460
TauI	GCSGC	2 cut(s)	22, 40
Tru1I	TTAA	2 cut(s)	122, 426
Tru9I	TTAA	2 cut(s)	122, 426
TscAI	CASTG	2 cut(s)	82, 471
TseFI	GTSAC	2 cut(s)	197, 466
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	2 cut(s)	197, 466
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	2 cut(s)	82, 471
XapI	RAATTY	2 cut(s)	163, 460
XceI	RCATGY	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	3 cut(s)	23, 180, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.