Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

23895907 .. 23897062

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCATGTTTCCTCCCATTCCGTCACCAGTTACACCACCGCCACGCTGGAGAAAAGACCAGCCTCACCTAGAAGGTCTCAACGATCACGGACGAGATCGGGGCTTACTCTACTCGAGGTCTCAGACCTGACGGAGGCGGAGGAGAAGAAAGAGAAGACGGCGTTTGATGTGAAGCTTGATTCTTGGTGGGCATTCATAGGAGGCGTTGTGGCATCTGAGACCCTATGCCAAGACCAGTCCGCTTCTTTCCCCCATCACAAATTCACATTTCCTCCTATTCTTAAAGTTTGTGCCAAGCTCCGATCAGCCCCTCAAGTCCAAATGGTCCACACCCATCTCCTCAAAACCGGGTTCTTCTCTGACATCTACGCAACCACCACTCTCACGGACGCTTCTATGAAGCTCAAGCTCATGGATTATGCACTCAAGCGCAGAGAGGCTTTAAAGGTGTTCAAGAGCATTGGTTTTGGAGGGCTCGGGTTGAATTCGGTTACTATAGATAATGTGTTTTCGGCGTGTGACAATGCGAACCGGGGGATGGGAATGGATTGCGTGGCGGTGAAGCTCGAGGTTGAGTGTGATGTTTATGTTGCTACCTTAGCTGGGAGTATGTATTCGAGCTATGGGGAGTTGGTTTCTGCTTCAAAGTTGTTTGAACATATGCCTGTCAATAATGTGGTGAGCTATAATGCTTTTATAACAGGGGTTTTGCAGAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGGTTTCGATTCTTTCTGCTTGTGCTAGTGTTTTGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

279

Amino Acids

30.53

Weight (kDa)

8.9

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	225 - 273	9.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	698
AciI	CCGC	4 cut(s)	39, 137, 240, 557
AcsI	RAATTY	3 cut(s)	260, 484, 781
AfiI	CCNNNNNNNGG	3 cut(s)	133, 538, 603
AgsI	TTSAA	4 cut(s)	454, 484, 645, 656
AluBI	AGCT	8 cut(s)	175, 298, 403, 409, 565, 602, 621, 684
AluI	AGCT	8 cut(s)	175, 298, 403, 409, 565, 602, 621, 684
Alw26I	GTCTC	3 cut(s)	81, 124, 212
Ama87I	CYCGRG	3 cut(s)	113, 476, 566
ApoI	RAATTY	3 cut(s)	260, 484, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	781, 813
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	2 cut(s)	349, 533
AsuHPI	GGTGA	5 cut(s)	16, 57, 571, 691, 782
AvaI	CYCGRG	3 cut(s)	113, 476, 566
AvaII	GGWCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	161
BccI	CCATC	3 cut(s)	261, 342, 532
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	349, 533
BcoDI	GTCTC	3 cut(s)	81, 124, 212
BfaI	CTAG	2 cut(s)	69, 819
BfmI	CTRYAG	1 cut(s)	495
Bme1390I	CCNGG	2 cut(s)	349, 533
Bme18I	GGWCC	1 cut(s)	325
BmeT110I	CYCGRG	3 cut(s)	113, 476, 566
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	723
BmrFI	CCNGG	2 cut(s)	349, 533
BmsI	GCATC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	598
BpuEI	CTTGAG	3 cut(s)	297, 389, 410
BpuMI	CCSGG	2 cut(s)	349, 533
BsaI	GGTCTC	3 cut(s)	81, 124, 212
BsaJI	CCNNGG	2 cut(s)	532, 725
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 256, 286
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 538, 603
Bse1I	ACTGG	2 cut(s)	27, 235
BseDI	CCNNGG	2 cut(s)	532, 725
BseGI	GGATG	2 cut(s)	543, 745
BseLI	CCNNNNNNNGG	3 cut(s)	133, 538, 603
BseMII	CTCAG	2 cut(s)	135, 207
BseNI	ACTGG	2 cut(s)	27, 235
BseRI	GAGGAG	2 cut(s)	155, 329
BseYI	CCCAGC	1 cut(s)	602
BsiHKCI	CYCGRG	3 cut(s)	113, 476, 566
BsiSI	CCGG	2 cut(s)	348, 532
BslI	CCNNNNNNNGG	3 cut(s)	133, 538, 603
BsmAI	GTCTC	3 cut(s)	81, 124, 212
BsmI	GAATGC	1 cut(s)	191
Bso31I	GGTCTC	3 cut(s)	81, 124, 212
BsoBI	CYCGRG	3 cut(s)	113, 476, 566
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	83, 95, 302
BspACI	CCGC	4 cut(s)	39, 137, 240, 557
BspCNI	CTCAG	2 cut(s)	134, 208
BspLI	GGNNCC	1 cut(s)	723
BspTNI	GGTCTC	3 cut(s)	81, 124, 212
BsrI	ACTGG	2 cut(s)	27, 235
BssECI	CCNNGG	2 cut(s)	532, 725
BssMI	GATC	3 cut(s)	83, 95, 302
BssT1I	CCWWGG	1 cut(s)	725
BstDEI	CTNAG	3 cut(s)	121, 216, 598
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	543, 745
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	3 cut(s)	86, 98, 305
BstMAI	GTCTC	3 cut(s)	81, 124, 212
BstMBI	GATC	3 cut(s)	83, 95, 302
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNSI	RCATGY	2 cut(s)	8, 765
BstSCI	CCNGG	2 cut(s)	347, 531
BstSFI	CTRYAG	1 cut(s)	495
BstV2I	GAAGAC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	543, 745
BtsIMutI	CAGTG	1 cut(s)	792
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	398
CviAII	CATG	3 cut(s)	5, 412, 762
DdeI	CTNAG	3 cut(s)	121, 216, 598
DpnI	GATC	3 cut(s)	85, 97, 304
DpnII	GATC	3 cut(s)	83, 95, 302
DraI	TTTAAA	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	725
Eco24I	GRGCYC	1 cut(s)	477
Eco31I	GGTCTC	3 cut(s)	81, 124, 212
Eco47I	GGWCC	1 cut(s)	325
Eco88I	CYCGRG	3 cut(s)	113, 476, 566
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoRI	GAATTC	2 cut(s)	484, 781
EcoT14I	CCWWGG	1 cut(s)	725
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	3 cut(s)	8, 415, 765
FatI	CATG	3 cut(s)	4, 411, 761
FauNDI	CATATG	1 cut(s)	660
FokI	GGATG	2 cut(s)	550, 752
FriOI	GRGCYC	1 cut(s)	477
FspBI	CTAG	2 cut(s)	69, 819
GlaI	GCGC	1 cut(s)	431
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	68
HapII	CCGG	2 cut(s)	348, 532
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	8, 415, 765
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	179, 802
HpaII	CCGG	2 cut(s)	348, 532
HphI	GGTGA	5 cut(s)	16, 57, 571, 691, 782
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	6 cut(s)	124, 217, 302, 361, 780, 836
Hpy188III	TCNNGA	1 cut(s)	454
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	4, 422, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	3 cut(s)	121, 216, 598
Hsp92II	CATG	3 cut(s)	8, 415, 765
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	3 cut(s)	83, 95, 302
LmnI	GCTCC	1 cut(s)	303
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	69, 819
MaeIII	GTNAC	5 cut(s)	22, 29, 490, 518, 787
MalI	GATC	3 cut(s)	85, 97, 304
MboI	GATC	3 cut(s)	83, 95, 302
MboII	GAAGA	3 cut(s)	157, 166, 346
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	3 cut(s)	260, 484, 781
MmeI	TCCRAC	1 cut(s)	717
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	282, 443, 747
MspI	CCGG	2 cut(s)	348, 532
MspR9I	CCNGG	2 cut(s)	349, 533
Mva1269I	GAATGC	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	599
NciI	CCSGG	2 cut(s)	349, 533
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	3 cut(s)	83, 95, 302
NlaIII	CATG	3 cut(s)	8, 415, 765
NlaIV	GGNNCC	1 cut(s)	723
NmuCI	GTSAC	3 cut(s)	22, 518, 787
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 765
PaeR7I	CTCGAG	2 cut(s)	113, 566
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	179, 802
PsiI	TTATAA	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	602
PspN4I	GGNNCC	1 cut(s)	723
PspPI	GGNCC	1 cut(s)	325
PspXI	VCTCGAGB	2 cut(s)	113, 566
SaqAI	TTAA	3 cut(s)	282, 443, 747
Sau3AI	GATC	3 cut(s)	83, 95, 302
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	349, 533
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	495
Sfr274I	CTCGAG	2 cut(s)	113, 566
SinI	GGWCC	1 cut(s)	325
SlaI	CTCGAG	2 cut(s)	113, 566
SmlI	CTYRAG	5 cut(s)	113, 312, 404, 425, 566
SmoI	CTYRAG	5 cut(s)	113, 312, 404, 425, 566
Sse9I	AATT	3 cut(s)	260, 484, 781
SsiI	CCGC	4 cut(s)	39, 137, 240, 557
SspMI	CTAG	2 cut(s)	69, 819
StyD4I	CCNGG	2 cut(s)	347, 531
StyI	CCWWGG	1 cut(s)	725
TaqI	TCGA	4 cut(s)	114, 567, 617, 800
TasI	AATT	3 cut(s)	260, 484, 781
TfiI	GAWTC	2 cut(s)	179, 802
Tru1I	TTAA	3 cut(s)	282, 443, 747
Tru9I	TTAA	3 cut(s)	282, 443, 747
TscAI	CASTG	1 cut(s)	792
TseFI	GTSAC	3 cut(s)	22, 518, 787
Tsp45I	GTSAC	3 cut(s)	22, 518, 787
TspDTI	ATGAA	2 cut(s)	184, 413
TspGWI	ACGGA	4 cut(s)	10, 103, 146, 401
TspRI	CASTG	1 cut(s)	792
VpaK11BI	GGWCC	1 cut(s)	325
XagI	CCTNNNNNAGG	1 cut(s)	131
XapI	RAATTY	3 cut(s)	260, 484, 781
XceI	RCATGY	2 cut(s)	8, 765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XhoI	CTCGAG	2 cut(s)	113, 566
XspI	CTAG	2 cut(s)	69, 819
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.