Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

44896884 .. 44897636

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013972

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGCTCCGAGGCTCAGTTTTACCTGGAGGCACATAGCCTACAACTGCCGTGGTCGGACTTTGACCAGCCCTACATGCAAGCCGGAACCCAGTGGGCATTCATAGGAGGCGCTGTAGCATCTGAGACCCTATGCCAAGACCACTCCGCTTCTCCCCCCCCCCACAAATTCACATTTCCTCCTATTCTCAAAGCCTATGCCAAGCTCCGATCAGCCCTTCAAGTCCAAATGGTCCACACCCATCTCCTGAAAATTGGGTTCTTCTCCGACATCTACACTGTCACCGCTCTCACGAACGCTTCCATGAAGCTCAACCTCATGGACAATGCACTCAAGGCTTTAAAGGTGTGCAAGAGCGTTGGTTTTGGAGGGCTCGGGTTGAATTCGGTGTGTGACAATGCGAAGCAGAGGATGGGAATGGATTGCGTGGCAGTGAAGCTCGGGGTTGAGAGTGATGTTTGTTTGGACCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

159

Amino Acids

17.24

Weight (kDa)

6.94

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	287
AciI	CCGC	2 cut(s)	147, 285
AcsI	RAATTY	2 cut(s)	167, 382
AgsI	TTSAA	2 cut(s)	221, 382
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	6, 205, 310, 439
AluI	AGCT	4 cut(s)	6, 205, 310, 439
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	119
Ama87I	CYCGRG	2 cut(s)	374, 440
ApoI	RAATTY	2 cut(s)	167, 382
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	232, 466
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	2 cut(s)	374, 440
AvaII	GGWCC	2 cut(s)	232, 466
BanII	GRGCYC	2 cut(s)	8, 375
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	2 cut(s)	249, 406
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	2 cut(s)	232, 466
BmeT110I	CYCGRG	2 cut(s)	374, 440
BmgT120I	GGNCC	2 cut(s)	232, 466
BmiI	GGNNCC	2 cut(s)	88, 468
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	9, 50
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 163, 193
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	9, 50
BseGI	GGATG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	29, 114
BseNI	ACTGG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	374, 440
BsiSI	CCGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	2 cut(s)	374, 440
Bsp1286I	GDGCHC	2 cut(s)	8, 375
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	2 cut(s)	147, 285
BspCNI	CTCAG	2 cut(s)	28, 115
BspLI	GGNNCC	2 cut(s)	88, 468
BspTNI	GGTCTC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	9, 50
BssMI	GATC	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	15, 123
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	417
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 335
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	417
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	3 cut(s)	98, 276, 438
Cac8I	GCNNGC	1 cut(s)	81
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	232, 466
CspCI	CAANNNNNGTGG	2 cut(s)	32, 67
CviAII	CATG	3 cut(s)	76, 304, 319
DdeI	CTNAG	2 cut(s)	15, 123
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
DraI	TTTAAA	1 cut(s)	342
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	8, 375
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	232, 466
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	2 cut(s)	374, 440
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	2 cut(s)	8, 375
FaeI	CATG	3 cut(s)	79, 307, 322
FaiI	YATR	7 cut(s)	36, 77, 104, 133, 198, 305, 320
FatI	CATG	3 cut(s)	75, 303, 318
FokI	GGATG	1 cut(s)	424
FriOI	GRGCYC	2 cut(s)	8, 375
GlaI	GCGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	114
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	79, 307, 322
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	5 cut(s)	10, 58, 124, 209, 268
Hpy188III	TCNNGA	2 cut(s)	247, 292
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	79, 329, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 335
HpyF3I	CTNAG	2 cut(s)	15, 123
Hsp92II	CATG	3 cut(s)	79, 307, 322
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	11, 210
LpnPI	CCDG	6 cut(s)	11, 38, 80, 97, 104, 260
LweI	GCATC	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	280, 392
MalI	GATC	1 cut(s)	211
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	8, 375
MluCI	AATT	3 cut(s)	167, 252, 382
MmeI	TCCRAC	2 cut(s)	36, 291
MnlI	CCTC	7 cut(s)	4, 22, 101, 189, 326, 362, 402
MseI	TTAA	1 cut(s)	341
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	76, 335
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	79, 307, 322
NlaIV	GGNNCC	2 cut(s)	88, 468
NmuCI	GTSAC	2 cut(s)	280, 392
NspI	RCATGY	1 cut(s)	79
PctI	GAATGC	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	88, 468
PspPI	GGNCC	2 cut(s)	232, 466
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	2 cut(s)	232, 466
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	8, 375
SetI	ASST	7 cut(s)	8, 27, 207, 312, 318, 348, 441
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	232, 466
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	167, 252, 382
SsiI	CCGC	2 cut(s)	147, 285
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	280
TasI	AATT	3 cut(s)	167, 252, 382
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	3 cut(s)	98, 283, 438
TseFI	GTSAC	2 cut(s)	280, 392
Tsp45I	GTSAC	2 cut(s)	280, 392
TspDTI	ATGAA	2 cut(s)	91, 320
TspRI	CASTG	3 cut(s)	98, 283, 438
VpaK11BI	GGWCC	2 cut(s)	232, 466
XapI	RAATTY	2 cut(s)	167, 382
XceI	RCATGY	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.