Prupe.1G269600_v2.0.a1

Pentatricopeptide repeat domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
27674167 .. 27676026
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G269600.1

Sequence Viewer

Length: 1860 bp
ATGAAGCGCGAAATAGCTCGACTTGTCGCAGATGGGTTATACAGAGATGCCCTCTGCTTATACGCTCAGCTCCACTCTGCTTCTTTGCGTCCTCACAAATTCACATTCCCTCCTCTTCTCAAAGCTTGTGGCAAGCTTCAATCAGCCCCACATGCCCAAATTCTGCATACCCATCTTATGAAAACTGGGTTTTCGGCTGATGTTTATTCAGCCACGGCTCTCACCGATGTGTACATGAAACTTCATCTTATCGGCGACGCAGTGAAGGTGTTCGAAGAAATGCCTGAACGGAACTTGGCTTCGTTGAATGCGGTGATTTCAGGGTTTCTGCATAATGGGTACTGTACAGAGGCTTTGCGGTTATTTAAGAACGTAGGGCCTGGAGGGTTCAGGCCCAATTCAGTTACAATAGCTAGTATGTTATCTGCATGTGGAACTGTAGAGCATGGCATGGAAATGCACTGCTTGGCGGTAAAGCTGGGTGTTGAGAGTGATGTTTATGTTGCAACCTCGGTTCTGACTATGTATTCTAACTGCGGAGGGTTGTTTTCGGCTGCAAAGGTGTTTGAAGAAATGCCCATCAAGAATATAGTGAGCTGTAATGCTTTTATTTCAGGGCTTTTGCAGAATGGGGTTCCTCATGTGGTGTTGGATATTTTTAAGAAAATGAGAGCATGTACAGGTGAAAATCCCAATTCAGTTACGTTGCTGTCTGTTCTTTCTGCCTGTGCTAGTCTTTTGTATCTCCGATTTGGCAAGCAGGTTCACGGGTTGATGATGAAAATTGAAGTGGAGCTTGATACTATGCTTGGAACAGCACTTGTGGACATGTATTCTAAGTGTGGTTGTTGGCAGCTGGCATATGGTACTTTCAAAGAACTAAATGAAAACAGGAATTTGTTTACATGGAACGCCATGATTTCTGGAATGATGTTGAATGCGCAGAATGAGAATGCTGTTGAGCTATTTGAACAGTTGGAATCTGAAGGATTTAAACCGGATTCGGTTACTTGGAATTCCATGATCAGTGGGTTTTCACAACTAGGGAAGGCGATTGAAGCTTTTGTGTATTTTAGGAGAATGCAATCAGCTGGTGTCGTCCCAAGTTTAAAATCTATCACAAGTCTTCTACCAGCGTGTGCAGATTTATCTGCTCTGCAATGTGGAAAAGAGGTCCATGGGCTTGCAGTTAGAACCTCTATTAGCAATGATCTGTTCATTTCCACTGCTCTTATTGACATGTACATGAAATGTGGGCAGTCTTCTTGGGCAACAAGAATTTTTGATTGGTTTCAGATAAAACCTAATGATCCTGCATTTTGGAACGCAATCATATCTGGGTATGGAAGGAATGGAGATAATGAATCTGCATTTGGGATCTTCGACCAGATGTTGGAAGCAAAAGTACAACCTAATGCAGCAACTTTCACGAGTCTTCTATCTATGTGCAGTCACACTGGTTTAGTGGACAAAGGATGGCAAGTTTTTAGGATGATGGACAGAGATTTTGGTCTAAAACCAAATCCAGCTCATTTTGGATGCATGATTGATCTTTTGGGTAGAACTGGCAGGTTGGATGAAGCCCGAGAGTTGATACAAGAATTATCAGAGCCTTCTGGAGCAGTTCTTGCATCTTTGCTAGGTGCTTGTGAATCTCATTTAGATTCCCAACTGGGGAAAGAAATGGCTATAAAACTTTCAGAATTAGAACCAGAGAACCCAACACCTTTCGTGATCCTGTCAAAGATATATGCTGCACTTGGCAGGTGGGAGGATGCAGAAAAGATTAGAGAATTGATGAATGATAAAACACTGAGAAAGCTCCCCGGCTTTAGTTTATTAAGAATGCATCAAAAGTAG

Protein Analysis

620

Amino Acids

68.3

Weight (kDa)

6.48

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1755
Acc16I TGCGCA 1 cut(s) 942
Acc36I ACCTGC 3 cut(s) 751, 1560, 1755
AccB7I CCANNNNNTGG 1 cut(s) 1393
AccII CGCG 1 cut(s) 9
AciI CCGC 4 cut(s) 311, 358, 470, 537
AclWI GGATC 3 cut(s) 1304, 1385, 1729
AcsI RAATTY 5 cut(s) 98, 159, 895, 1015, 1278
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 7 cut(s) 233, 341, 346, 679, 868, 1244, 1407
AfiI CCNNNNNNNGG 2 cut(s) 1393, 1674
AflIII ACRYGT 2 cut(s) 828, 1239
AgsI TTSAA 8 cut(s) 140, 307, 569, 788, 874, 937, 971, 1058
AjnI CCWGG 1 cut(s) 379
AjuI GAANNNNNNNTTGG 4 cut(s) 1270, 1302, 1356, 1388
AleI CACNNNNGTG 1 cut(s) 227
AlwI GGATC 3 cut(s) 1304, 1385, 1729
Ama87I CYCGRG 1 cut(s) 1584
AoxI GGCC 2 cut(s) 377, 392
ApeKI GCWGC 4 cut(s) 554, 853, 1418, 1754
ApoI RAATTY 5 cut(s) 98, 159, 895, 1015, 1278
ArsI GACNNNNNNTTYG 2 cut(s) 1490, 1522
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 9, 943
AspS9I GGNCC 3 cut(s) 377, 393, 1174
AsuC2I CCSGG 1 cut(s) 1827
AsuHPI GGTGA 3 cut(s) 214, 325, 695
AsuII TTCGAA 1 cut(s) 273
AvaI CYCGRG 1 cut(s) 1584
AvaII GGWCC 1 cut(s) 1174
BarI GAAGNNNNNNTAC 2 cut(s) 1389, 1421
BauI CACGAG 1 cut(s) 1429
BbsI GAAGAC 3 cut(s) 1118, 1254, 1427
BbvI GCAGC 4 cut(s) 541, 865, 1430, 1741
BccI CCATC 5 cut(s) 26, 180, 587, 1470, 1489
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 381
BclI TGATCA 1 cut(s) 1023
BcnI CCSGG 1 cut(s) 1827
BfaI CTAG 4 cut(s) 414, 732, 1043, 1640
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 3 cut(s) 751, 1560, 1755
BisI GCNGC 4 cut(s) 555, 854, 1419, 1755
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 4 cut(s) 556, 855, 1420, 1756
Bme1390I CCNGG 2 cut(s) 381, 1827
Bme18I GGWCC 1 cut(s) 1174
BmeT110I CYCGRG 1 cut(s) 1584
BmgT120I GGNCC 3 cut(s) 377, 393, 1174
BmiI GGNNCC 1 cut(s) 636
BmrFI CCNGG 2 cut(s) 381, 1827
BmrI ACTGGG 2 cut(s) 195, 1682
BmsI GCATC 4 cut(s) 37, 1529, 1640, 1765
BmuI ACTGGG 2 cut(s) 195, 1682
BpiI GAAGAC 3 cut(s) 1118, 1254, 1427
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 2 cut(s) 402, 1638
Bpu1102I GCTNAGC 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 1827
BsaJI CCNNGG 4 cut(s) 213, 510, 1177, 1825
BsaWI WCCGGW 1 cut(s) 997
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 2 cut(s) 1393, 1674
Bse1I ACTGG 4 cut(s) 190, 1462, 1570, 1677
Bse3DI GCAATG 2 cut(s) 1166, 1213
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 4 cut(s) 213, 510, 1177, 1825
BseGI GGATG 5 cut(s) 1481, 1497, 1544, 1582, 1780
BseLI CCNNNNNNNGG 2 cut(s) 1393, 1674
BseMI GCAATG 2 cut(s) 1166, 1213
BseMII CTCAG 2 cut(s) 80, 1805
BseNI ACTGG 4 cut(s) 190, 1462, 1570, 1677
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 4 cut(s) 541, 865, 1430, 1741
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 3 cut(s) 1161, 1468, 1740
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 379, 394
BsiHKCI CYCGRG 1 cut(s) 1584
BsiSI CCGG 2 cut(s) 998, 1827
BslFI GGGAC 1 cut(s) 1085
BslI CCNNNNNNNGG 2 cut(s) 1393, 1674
BsmFI GGGAC 1 cut(s) 1085
BsmI GAATGC 5 cut(s) 313, 943, 958, 1086, 1851
BsnI GGCC 2 cut(s) 379, 394
BsoBI CYCGRG 1 cut(s) 1584
Bsp119I TTCGAA 1 cut(s) 273
Bsp1407I TGTACA 4 cut(s) 231, 344, 677, 1242
Bsp143I GATC 6 cut(s) 1023, 1210, 1309, 1377, 1549, 1734
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 1177
BspACI CCGC 4 cut(s) 311, 358, 470, 537
BspANI GGCC 2 cut(s) 379, 394
BspCNI CTCAG 2 cut(s) 79, 1806
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 636
BspMI ACCTGC 3 cut(s) 751, 1560, 1755
BspPI GGATC 3 cut(s) 1304, 1385, 1729
BspT104I TTCGAA 1 cut(s) 273
BsrDI GCAATG 2 cut(s) 1166, 1213
BsrGI TGTACA 4 cut(s) 231, 344, 677, 1242
BsrI ACTGG 4 cut(s) 190, 1462, 1570, 1677
BssECI CCNNGG 4 cut(s) 213, 510, 1177, 1825
BssMI GATC 6 cut(s) 1023, 1210, 1309, 1377, 1549, 1734
BssSI CACGAG 1 cut(s) 1429
BssT1I CCWWGG 1 cut(s) 1177
Bst2BI CACGAG 1 cut(s) 1429
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 3 cut(s) 344, 439, 975
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 1628
BstAUI TGTACA 4 cut(s) 231, 344, 677, 1242
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 4 cut(s) 134, 758, 858, 1185
BstDEI CTNAG 3 cut(s) 66, 837, 1814
BstDSI CCRYGG 2 cut(s) 213, 1177
BstF5I GGATG 5 cut(s) 1481, 1497, 1544, 1582, 1780
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 2 cut(s) 9, 943
BstKTI GATC 6 cut(s) 1026, 1213, 1312, 1380, 1552, 1737
BstMBI GATC 6 cut(s) 1023, 1210, 1309, 1377, 1549, 1734
BstMWI GCNNNNNNNGC 3 cut(s) 152, 1058, 1628
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 5 cut(s) 155, 432, 678, 832, 1243
BstSCI CCNGG 2 cut(s) 379, 1825
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 4 cut(s) 541, 865, 1430, 1741
BstV2I GAAGAC 3 cut(s) 1118, 1254, 1427
BstX2I RGATCY 1 cut(s) 1377
BstYI RGATCY 1 cut(s) 1377
BsuRI GGCC 2 cut(s) 379, 394
BtgI CCRYGG 2 cut(s) 213, 1177
BtsCI GGATG 5 cut(s) 1481, 1497, 1544, 1582, 1780
BtsI GCAGTG 3 cut(s) 267, 460, 1224
BtsIMutI CAGTG 6 cut(s) 267, 460, 1033, 1224, 1455, 1811
BveI ACCTGC 3 cut(s) 751, 1560, 1755
Cac8I GCNNGC 4 cut(s) 134, 758, 858, 1185
CfoI GCGC 2 cut(s) 9, 943
Cfr13I GGNCC 3 cut(s) 377, 393, 1174
CseI GACGC 2 cut(s) 77, 266
Csp6I GTAC 7 cut(s) 232, 340, 345, 678, 867, 1243, 1406
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviQI GTAC 7 cut(s) 232, 340, 345, 678, 867, 1243, 1406
DdeI CTNAG 3 cut(s) 66, 837, 1814
DpnI GATC 6 cut(s) 1025, 1212, 1311, 1379, 1551, 1736
DpnII GATC 6 cut(s) 1023, 1210, 1309, 1377, 1549, 1734
DraI TTTAAA 2 cut(s) 994, 1110
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 1177
Eco47I GGWCC 1 cut(s) 1174
Eco57I CTGAAG 1 cut(s) 1005
Eco88I CYCGRG 1 cut(s) 1584
EcoO109I RGGNCCY 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 1015
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 1177
EcoT22I ATGCAT 2 cut(s) 1544, 1851
ErhI CCWWGG 1 cut(s) 1177
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FaqI GGGAC 1 cut(s) 1085
FauNDI CATATG 1 cut(s) 862
FbaI TGATCA 1 cut(s) 1023
Fnu4HI GCNGC 4 cut(s) 555, 854, 1419, 1755
FokI GGATG 5 cut(s) 1488, 1504, 1551, 1589, 1787
Fsp4HI GCNGC 4 cut(s) 555, 854, 1419, 1755
FspBI CTAG 4 cut(s) 414, 732, 1043, 1640
FspI TGCGCA 1 cut(s) 942
GlaI GCGC 2 cut(s) 8, 942
GluI GCNGC 4 cut(s) 555, 854, 1419, 1755
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 402, 1638
HaeIII GGCC 2 cut(s) 379, 394
HapII CCGG 2 cut(s) 998, 1827
HgaI GACGC 2 cut(s) 77, 266
HhaI GCGC 2 cut(s) 9, 943
Hin6I GCGC 2 cut(s) 7, 941
HinP1I GCGC 2 cut(s) 7, 941
HindIII AAGCTT 3 cut(s) 123, 134, 1059
HinfI GANTC 6 cut(s) 980, 1001, 1364, 1432, 1652, 1664
HpaII CCGG 2 cut(s) 998, 1827
HphI GGTGA 3 cut(s) 214, 325, 695
Hpy166II GTNNAC 5 cut(s) 232, 766, 826, 903, 1468
Hpy188I TCNGA 6 cut(s) 519, 749, 985, 1296, 1609, 1702
Hpy188III TCNNGA 5 cut(s) 583, 924, 1429, 1617, 1732
Hpy8I GTNNAC 5 cut(s) 232, 766, 826, 903, 1468
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 5 cut(s) 259, 980, 1042, 1341, 1623
HpyCH4III ACNGT 3 cut(s) 344, 439, 975
HpyCH4IV ACGT 2 cut(s) 372, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 1058, 1628
HpyF3I CTNAG 3 cut(s) 66, 837, 1814
HpySE526I ACGT 2 cut(s) 372, 704
HspAI GCGC 2 cut(s) 7, 941
Ksp22I TGATCA 1 cut(s) 1023
Kzo9I GATC 6 cut(s) 1023, 1210, 1309, 1377, 1549, 1734
LmnI GCTCC 4 cut(s) 75, 793, 1619, 1827
Lsp1109I GCAGC 4 cut(s) 541, 865, 1430, 1741
LweI GCATC 4 cut(s) 37, 1529, 1640, 1765
MaeI CTAG 4 cut(s) 414, 732, 1043, 1640
MaeII ACGT 2 cut(s) 372, 704
MaeIII GTNAC 4 cut(s) 403, 700, 1006, 1451
MalI GATC 6 cut(s) 1025, 1212, 1311, 1379, 1551, 1736
MboI GATC 6 cut(s) 1023, 1210, 1309, 1377, 1549, 1734
MboII GAAGA 7 cut(s) 107, 287, 581, 1118, 1254, 1372, 1427
MflI RGATCY 1 cut(s) 1377
MlyI GAGTC 1 cut(s) 1441
MmeI TCCRAC 4 cut(s) 630, 957, 1374, 1554
Mph1103I ATGCAT 2 cut(s) 1544, 1851
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 5 cut(s) 366, 660, 993, 1109, 1841
MslI CAYNNNNRTG 3 cut(s) 227, 455, 1244
MspA1I CMGCKG 2 cut(s) 856, 1091
MspI CCGG 2 cut(s) 998, 1827
MspR9I CCNGG 2 cut(s) 381, 1827
Mva1269I GAATGC 5 cut(s) 313, 943, 958, 1086, 1851
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 3 cut(s) 152, 1058, 1628
NciI CCSGG 1 cut(s) 1827
NcoI CCATGG 1 cut(s) 1177
NdeI CATATG 1 cut(s) 862
NdeII GATC 6 cut(s) 1023, 1210, 1309, 1377, 1549, 1734
NlaIV GGNNCC 1 cut(s) 636
NmuCI GTSAC 1 cut(s) 1451
NsbI TGCGCA 1 cut(s) 942
NsiI ATGCAT 2 cut(s) 1544, 1851
NspI RCATGY 5 cut(s) 155, 432, 678, 832, 1243
NspV TTCGAA 1 cut(s) 273
OliI CACNNNNGTG 1 cut(s) 227
PaqCI CACCTGC 1 cut(s) 1755
PciI ACATGT 2 cut(s) 828, 1239
PctI GAATGC 5 cut(s) 313, 943, 958, 1086, 1851
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 5 cut(s) 980, 1001, 1364, 1652, 1664
PflMI CCANNNNNTGG 1 cut(s) 1393
PkrI GCNGC 4 cut(s) 556, 855, 1420, 1756
PleI GAGTC 1 cut(s) 1440
PpsI GAGTC 1 cut(s) 1440
PscI ACATGT 2 cut(s) 828, 1239
Psp6I CCWGG 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 636
PspPI GGNCC 3 cut(s) 377, 393, 1174
PsuI RGATCY 1 cut(s) 1377
PvuII CAGCTG 2 cut(s) 856, 1091
RsaI GTAC 7 cut(s) 233, 341, 346, 679, 868, 1244, 1407
RsaNI GTAC 7 cut(s) 232, 340, 345, 678, 867, 1243, 1406
RseI CAYNNNNRTG 3 cut(s) 227, 455, 1244
SaqAI TTAA 5 cut(s) 366, 660, 993, 1109, 1841
SatI GCNGC 4 cut(s) 555, 854, 1419, 1755
Sau3AI GATC 6 cut(s) 1023, 1210, 1309, 1377, 1549, 1734
Sau96I GGNCC 3 cut(s) 377, 393, 1174
SchI GAGTC 1 cut(s) 1441
ScrFI CCNGG 2 cut(s) 381, 1827
SfaNI GCATC 4 cut(s) 37, 1529, 1640, 1765
SfcI CTRYAG 1 cut(s) 438
SfuI TTCGAA 1 cut(s) 273
SinI GGWCC 1 cut(s) 1174
SmiMI CAYNNNNRTG 3 cut(s) 227, 455, 1244
SsiI CCGC 4 cut(s) 311, 358, 470, 537
SspMI CTAG 4 cut(s) 414, 732, 1043, 1640
StyD4I CCNGG 2 cut(s) 379, 1825
StyI CCWWGG 1 cut(s) 1177
TaaI ACNGT 3 cut(s) 344, 439, 975
TaiI ACGT 2 cut(s) 375, 707
TaqI TCGA 3 cut(s) 19, 273, 1383
TatI WGTACW 5 cut(s) 231, 344, 677, 1242, 1405
TfiI GAWTC 5 cut(s) 980, 1001, 1364, 1652, 1664
Tru1I TTAA 5 cut(s) 366, 660, 993, 1109, 1841
Tru9I TTAA 5 cut(s) 366, 660, 993, 1109, 1841
TscAI CASTG 6 cut(s) 267, 467, 1033, 1231, 1462, 1818
TseFI GTSAC 1 cut(s) 1451
TseI GCWGC 4 cut(s) 554, 853, 1418, 1754
Tsp45I GTSAC 1 cut(s) 1451
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 6 cut(s) 267, 467, 1033, 1231, 1462, 1818
Van91I CCANNNNNTGG 1 cut(s) 1393
VpaK11BI GGWCC 1 cut(s) 1174
XapI RAATTY 5 cut(s) 98, 159, 895, 1015, 1278
XceI RCATGY 5 cut(s) 155, 432, 678, 832, 1243
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 4 cut(s) 414, 732, 1043, 1640
Zsp2I ATGCAT 2 cut(s) 1544, 1851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.