Pentatricopeptide repeat domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1755 |
| Acc16I | TGCGCA | 1 cut(s) | 942 |
| Acc36I | ACCTGC | 3 cut(s) | 751, 1560, 1755 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1393 |
| AccII | CGCG | 1 cut(s) | 9 |
| AciI | CCGC | 4 cut(s) | 311, 358, 470, 537 |
| AclWI | GGATC | 3 cut(s) | 1304, 1385, 1729 |
| AcsI | RAATTY | 5 cut(s) | 98, 159, 895, 1015, 1278 |
| AcuI | CTGAAG | 1 cut(s) | 1005 |
| AfaI | GTAC | 7 cut(s) | 233, 341, 346, 679, 868, 1244, 1407 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1393, 1674 |
| AflIII | ACRYGT | 2 cut(s) | 828, 1239 |
| AgsI | TTSAA | 8 cut(s) | 140, 307, 569, 788, 874, 937, 971, 1058 |
| AjnI | CCWGG | 1 cut(s) | 379 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1270, 1302, 1356, 1388 |
| AleI | CACNNNNGTG | 1 cut(s) | 227 |
| AlwI | GGATC | 3 cut(s) | 1304, 1385, 1729 |
| Ama87I | CYCGRG | 1 cut(s) | 1584 |
| AoxI | GGCC | 2 cut(s) | 377, 392 |
| ApeKI | GCWGC | 4 cut(s) | 554, 853, 1418, 1754 |
| ApoI | RAATTY | 5 cut(s) | 98, 159, 895, 1015, 1278 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1490, 1522 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 269 |
| AspLEI | GCGC | 2 cut(s) | 9, 943 |
| AspS9I | GGNCC | 3 cut(s) | 377, 393, 1174 |
| AsuC2I | CCSGG | 1 cut(s) | 1827 |
| AsuHPI | GGTGA | 3 cut(s) | 214, 325, 695 |
| AsuII | TTCGAA | 1 cut(s) | 273 |
| AvaI | CYCGRG | 1 cut(s) | 1584 |
| AvaII | GGWCC | 1 cut(s) | 1174 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1389, 1421 |
| BauI | CACGAG | 1 cut(s) | 1429 |
| BbsI | GAAGAC | 3 cut(s) | 1118, 1254, 1427 |
| BbvI | GCAGC | 4 cut(s) | 541, 865, 1430, 1741 |
| BccI | CCATC | 5 cut(s) | 26, 180, 587, 1470, 1489 |
| BceAI | ACGGC | 1 cut(s) | 231 |
| BciT130I | CCWGG | 1 cut(s) | 381 |
| BclI | TGATCA | 1 cut(s) | 1023 |
| BcnI | CCSGG | 1 cut(s) | 1827 |
| BfaI | CTAG | 4 cut(s) | 414, 732, 1043, 1640 |
| BfmI | CTRYAG | 1 cut(s) | 438 |
| BfuAI | ACCTGC | 3 cut(s) | 751, 1560, 1755 |
| BisI | GCNGC | 4 cut(s) | 555, 854, 1419, 1755 |
| BlpI | GCTNAGC | 1 cut(s) | 66 |
| BlsI | GCNGC | 4 cut(s) | 556, 855, 1420, 1756 |
| Bme1390I | CCNGG | 2 cut(s) | 381, 1827 |
| Bme18I | GGWCC | 1 cut(s) | 1174 |
| BmeT110I | CYCGRG | 1 cut(s) | 1584 |
| BmgT120I | GGNCC | 3 cut(s) | 377, 393, 1174 |
| BmiI | GGNNCC | 1 cut(s) | 636 |
| BmrFI | CCNGG | 2 cut(s) | 381, 1827 |
| BmrI | ACTGGG | 2 cut(s) | 195, 1682 |
| BmsI | GCATC | 4 cut(s) | 37, 1529, 1640, 1765 |
| BmuI | ACTGGG | 2 cut(s) | 195, 1682 |
| BpiI | GAAGAC | 3 cut(s) | 1118, 1254, 1427 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 36, 68 |
| BpmI | CTGGAG | 2 cut(s) | 402, 1638 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 66 |
| Bpu14I | TTCGAA | 1 cut(s) | 273 |
| BpuMI | CCSGG | 1 cut(s) | 1827 |
| BsaJI | CCNNGG | 4 cut(s) | 213, 510, 1177, 1825 |
| BsaWI | WCCGGW | 1 cut(s) | 997 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 94, 124 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1393, 1674 |
| Bse1I | ACTGG | 4 cut(s) | 190, 1462, 1570, 1677 |
| Bse3DI | GCAATG | 2 cut(s) | 1166, 1213 |
| BseBI | CCWGG | 1 cut(s) | 381 |
| BseDI | CCNNGG | 4 cut(s) | 213, 510, 1177, 1825 |
| BseGI | GGATG | 5 cut(s) | 1481, 1497, 1544, 1582, 1780 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1393, 1674 |
| BseMI | GCAATG | 2 cut(s) | 1166, 1213 |
| BseMII | CTCAG | 2 cut(s) | 80, 1805 |
| BseNI | ACTGG | 4 cut(s) | 190, 1462, 1570, 1677 |
| BseRI | GAGGAG | 1 cut(s) | 102 |
| BseXI | GCAGC | 4 cut(s) | 541, 865, 1430, 1741 |
| BseYI | CCCAGC | 1 cut(s) | 478 |
| BsgI | GTGCAG | 3 cut(s) | 1161, 1468, 1740 |
| Bsh1236I | CGCG | 1 cut(s) | 9 |
| BshFI | GGCC | 2 cut(s) | 379, 394 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1584 |
| BsiSI | CCGG | 2 cut(s) | 998, 1827 |
| BslFI | GGGAC | 1 cut(s) | 1085 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1393, 1674 |
| BsmFI | GGGAC | 1 cut(s) | 1085 |
| BsmI | GAATGC | 5 cut(s) | 313, 943, 958, 1086, 1851 |
| BsnI | GGCC | 2 cut(s) | 379, 394 |
| BsoBI | CYCGRG | 1 cut(s) | 1584 |
| Bsp119I | TTCGAA | 1 cut(s) | 273 |
| Bsp1407I | TGTACA | 4 cut(s) | 231, 344, 677, 1242 |
| Bsp143I | GATC | 6 cut(s) | 1023, 1210, 1309, 1377, 1549, 1734 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 66 |
| Bsp19I | CCATGG | 1 cut(s) | 1177 |
| BspACI | CCGC | 4 cut(s) | 311, 358, 470, 537 |
| BspANI | GGCC | 2 cut(s) | 379, 394 |
| BspCNI | CTCAG | 2 cut(s) | 79, 1806 |
| BspFNI | CGCG | 1 cut(s) | 9 |
| BspLI | GGNNCC | 1 cut(s) | 636 |
| BspMI | ACCTGC | 3 cut(s) | 751, 1560, 1755 |
| BspPI | GGATC | 3 cut(s) | 1304, 1385, 1729 |
| BspT104I | TTCGAA | 1 cut(s) | 273 |
| BsrDI | GCAATG | 2 cut(s) | 1166, 1213 |
| BsrGI | TGTACA | 4 cut(s) | 231, 344, 677, 1242 |
| BsrI | ACTGG | 4 cut(s) | 190, 1462, 1570, 1677 |
| BssECI | CCNNGG | 4 cut(s) | 213, 510, 1177, 1825 |
| BssMI | GATC | 6 cut(s) | 1023, 1210, 1309, 1377, 1549, 1734 |
| BssSI | CACGAG | 1 cut(s) | 1429 |
| BssT1I | CCWWGG | 1 cut(s) | 1177 |
| Bst2BI | CACGAG | 1 cut(s) | 1429 |
| Bst2UI | CCWGG | 1 cut(s) | 381 |
| Bst4CI | ACNGT | 3 cut(s) | 344, 439, 975 |
| Bst6I | CTCTTC | 1 cut(s) | 120 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1628 |
| BstAUI | TGTACA | 4 cut(s) | 231, 344, 677, 1242 |
| BstBI | TTCGAA | 1 cut(s) | 273 |
| BstC8I | GCNNGC | 4 cut(s) | 134, 758, 858, 1185 |
| BstDEI | CTNAG | 3 cut(s) | 66, 837, 1814 |
| BstDSI | CCRYGG | 2 cut(s) | 213, 1177 |
| BstF5I | GGATG | 5 cut(s) | 1481, 1497, 1544, 1582, 1780 |
| BstFNI | CGCG | 1 cut(s) | 9 |
| BstHHI | GCGC | 2 cut(s) | 9, 943 |
| BstKTI | GATC | 6 cut(s) | 1026, 1213, 1312, 1380, 1552, 1737 |
| BstMBI | GATC | 6 cut(s) | 1023, 1210, 1309, 1377, 1549, 1734 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 152, 1058, 1628 |
| BstNI | CCWGG | 1 cut(s) | 381 |
| BstNSI | RCATGY | 5 cut(s) | 155, 432, 678, 832, 1243 |
| BstSCI | CCNGG | 2 cut(s) | 379, 1825 |
| BstSFI | CTRYAG | 1 cut(s) | 438 |
| BstUI | CGCG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 4 cut(s) | 541, 865, 1430, 1741 |
| BstV2I | GAAGAC | 3 cut(s) | 1118, 1254, 1427 |
| BstX2I | RGATCY | 1 cut(s) | 1377 |
| BstYI | RGATCY | 1 cut(s) | 1377 |
| BsuRI | GGCC | 2 cut(s) | 379, 394 |
| BtgI | CCRYGG | 2 cut(s) | 213, 1177 |
| BtsCI | GGATG | 5 cut(s) | 1481, 1497, 1544, 1582, 1780 |
| BtsI | GCAGTG | 3 cut(s) | 267, 460, 1224 |
| BtsIMutI | CAGTG | 6 cut(s) | 267, 460, 1033, 1224, 1455, 1811 |
| BveI | ACCTGC | 3 cut(s) | 751, 1560, 1755 |
| Cac8I | GCNNGC | 4 cut(s) | 134, 758, 858, 1185 |
| CfoI | GCGC | 2 cut(s) | 9, 943 |
| Cfr13I | GGNCC | 3 cut(s) | 377, 393, 1174 |
| CseI | GACGC | 2 cut(s) | 77, 266 |
| Csp6I | GTAC | 7 cut(s) | 232, 340, 345, 678, 867, 1243, 1406 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 109, 144 |
| CviQI | GTAC | 7 cut(s) | 232, 340, 345, 678, 867, 1243, 1406 |
| DdeI | CTNAG | 3 cut(s) | 66, 837, 1814 |
| DpnI | GATC | 6 cut(s) | 1025, 1212, 1311, 1379, 1551, 1736 |
| DpnII | GATC | 6 cut(s) | 1023, 1210, 1309, 1377, 1549, 1734 |
| DraI | TTTAAA | 2 cut(s) | 994, 1110 |
| Eam1104I | CTCTTC | 1 cut(s) | 120 |
| EarI | CTCTTC | 1 cut(s) | 120 |
| Eco130I | CCWWGG | 1 cut(s) | 1177 |
| Eco47I | GGWCC | 1 cut(s) | 1174 |
| Eco57I | CTGAAG | 1 cut(s) | 1005 |
| Eco88I | CYCGRG | 1 cut(s) | 1584 |
| EcoO109I | RGGNCCY | 1 cut(s) | 377 |
| EcoRI | GAATTC | 1 cut(s) | 1015 |
| EcoRII | CCWGG | 1 cut(s) | 379 |
| EcoT14I | CCWWGG | 1 cut(s) | 1177 |
| EcoT22I | ATGCAT | 2 cut(s) | 1544, 1851 |
| ErhI | CCWWGG | 1 cut(s) | 1177 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 780, 812 |
| FaqI | GGGAC | 1 cut(s) | 1085 |
| FauNDI | CATATG | 1 cut(s) | 862 |
| FbaI | TGATCA | 1 cut(s) | 1023 |
| Fnu4HI | GCNGC | 4 cut(s) | 555, 854, 1419, 1755 |
| FokI | GGATG | 5 cut(s) | 1488, 1504, 1551, 1589, 1787 |
| Fsp4HI | GCNGC | 4 cut(s) | 555, 854, 1419, 1755 |
| FspBI | CTAG | 4 cut(s) | 414, 732, 1043, 1640 |
| FspI | TGCGCA | 1 cut(s) | 942 |
| GlaI | GCGC | 2 cut(s) | 8, 942 |
| GluI | GCNGC | 4 cut(s) | 555, 854, 1419, 1755 |
| GsaI | CCCAGC | 1 cut(s) | 482 |
| GsuI | CTGGAG | 2 cut(s) | 402, 1638 |
| HaeIII | GGCC | 2 cut(s) | 379, 394 |
| HapII | CCGG | 2 cut(s) | 998, 1827 |
| HgaI | GACGC | 2 cut(s) | 77, 266 |
| HhaI | GCGC | 2 cut(s) | 9, 943 |
| Hin6I | GCGC | 2 cut(s) | 7, 941 |
| HinP1I | GCGC | 2 cut(s) | 7, 941 |
| HindIII | AAGCTT | 3 cut(s) | 123, 134, 1059 |
| HinfI | GANTC | 6 cut(s) | 980, 1001, 1364, 1432, 1652, 1664 |
| HpaII | CCGG | 2 cut(s) | 998, 1827 |
| HphI | GGTGA | 3 cut(s) | 214, 325, 695 |
| Hpy166II | GTNNAC | 5 cut(s) | 232, 766, 826, 903, 1468 |
| Hpy188I | TCNGA | 6 cut(s) | 519, 749, 985, 1296, 1609, 1702 |
| Hpy188III | TCNNGA | 5 cut(s) | 583, 924, 1429, 1617, 1732 |
| Hpy8I | GTNNAC | 5 cut(s) | 232, 766, 826, 903, 1468 |
| Hpy99I | CGWCG | 1 cut(s) | 260 |
| HpyAV | CCTTC | 5 cut(s) | 259, 980, 1042, 1341, 1623 |
| HpyCH4III | ACNGT | 3 cut(s) | 344, 439, 975 |
| HpyCH4IV | ACGT | 2 cut(s) | 372, 704 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 152, 1058, 1628 |
| HpyF3I | CTNAG | 3 cut(s) | 66, 837, 1814 |
| HpySE526I | ACGT | 2 cut(s) | 372, 704 |
| HspAI | GCGC | 2 cut(s) | 7, 941 |
| Ksp22I | TGATCA | 1 cut(s) | 1023 |
| Kzo9I | GATC | 6 cut(s) | 1023, 1210, 1309, 1377, 1549, 1734 |
| LmnI | GCTCC | 4 cut(s) | 75, 793, 1619, 1827 |
| Lsp1109I | GCAGC | 4 cut(s) | 541, 865, 1430, 1741 |
| LweI | GCATC | 4 cut(s) | 37, 1529, 1640, 1765 |
| MaeI | CTAG | 4 cut(s) | 414, 732, 1043, 1640 |
| MaeII | ACGT | 2 cut(s) | 372, 704 |
| MaeIII | GTNAC | 4 cut(s) | 403, 700, 1006, 1451 |
| MalI | GATC | 6 cut(s) | 1025, 1212, 1311, 1379, 1551, 1736 |
| MboI | GATC | 6 cut(s) | 1023, 1210, 1309, 1377, 1549, 1734 |
| MboII | GAAGA | 7 cut(s) | 107, 287, 581, 1118, 1254, 1372, 1427 |
| MflI | RGATCY | 1 cut(s) | 1377 |
| MlyI | GAGTC | 1 cut(s) | 1441 |
| MmeI | TCCRAC | 4 cut(s) | 630, 957, 1374, 1554 |
| Mph1103I | ATGCAT | 2 cut(s) | 1544, 1851 |
| MroXI | GAANNNNTTC | 1 cut(s) | 269 |
| MseI | TTAA | 5 cut(s) | 366, 660, 993, 1109, 1841 |
| MslI | CAYNNNNRTG | 3 cut(s) | 227, 455, 1244 |
| MspA1I | CMGCKG | 2 cut(s) | 856, 1091 |
| MspI | CCGG | 2 cut(s) | 998, 1827 |
| MspR9I | CCNGG | 2 cut(s) | 381, 1827 |
| Mva1269I | GAATGC | 5 cut(s) | 313, 943, 958, 1086, 1851 |
| MvaI | CCWGG | 1 cut(s) | 381 |
| MvnI | CGCG | 1 cut(s) | 9 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 152, 1058, 1628 |
| NciI | CCSGG | 1 cut(s) | 1827 |
| NcoI | CCATGG | 1 cut(s) | 1177 |
| NdeI | CATATG | 1 cut(s) | 862 |
| NdeII | GATC | 6 cut(s) | 1023, 1210, 1309, 1377, 1549, 1734 |
| NlaIV | GGNNCC | 1 cut(s) | 636 |
| NmuCI | GTSAC | 1 cut(s) | 1451 |
| NsbI | TGCGCA | 1 cut(s) | 942 |
| NsiI | ATGCAT | 2 cut(s) | 1544, 1851 |
| NspI | RCATGY | 5 cut(s) | 155, 432, 678, 832, 1243 |
| NspV | TTCGAA | 1 cut(s) | 273 |
| OliI | CACNNNNGTG | 1 cut(s) | 227 |
| PaqCI | CACCTGC | 1 cut(s) | 1755 |
| PciI | ACATGT | 2 cut(s) | 828, 1239 |
| PctI | GAATGC | 5 cut(s) | 313, 943, 958, 1086, 1851 |
| PdmI | GAANNNNTTC | 1 cut(s) | 269 |
| PfeI | GAWTC | 5 cut(s) | 980, 1001, 1364, 1652, 1664 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1393 |
| PkrI | GCNGC | 4 cut(s) | 556, 855, 1420, 1756 |
| PleI | GAGTC | 1 cut(s) | 1440 |
| PpsI | GAGTC | 1 cut(s) | 1440 |
| PscI | ACATGT | 2 cut(s) | 828, 1239 |
| Psp6I | CCWGG | 1 cut(s) | 379 |
| PspFI | CCCAGC | 1 cut(s) | 478 |
| PspGI | CCWGG | 1 cut(s) | 379 |
| PspN4I | GGNNCC | 1 cut(s) | 636 |
| PspPI | GGNCC | 3 cut(s) | 377, 393, 1174 |
| PsuI | RGATCY | 1 cut(s) | 1377 |
| PvuII | CAGCTG | 2 cut(s) | 856, 1091 |
| RsaI | GTAC | 7 cut(s) | 233, 341, 346, 679, 868, 1244, 1407 |
| RsaNI | GTAC | 7 cut(s) | 232, 340, 345, 678, 867, 1243, 1406 |
| RseI | CAYNNNNRTG | 3 cut(s) | 227, 455, 1244 |
| SaqAI | TTAA | 5 cut(s) | 366, 660, 993, 1109, 1841 |
| SatI | GCNGC | 4 cut(s) | 555, 854, 1419, 1755 |
| Sau3AI | GATC | 6 cut(s) | 1023, 1210, 1309, 1377, 1549, 1734 |
| Sau96I | GGNCC | 3 cut(s) | 377, 393, 1174 |
| SchI | GAGTC | 1 cut(s) | 1441 |
| ScrFI | CCNGG | 2 cut(s) | 381, 1827 |
| SfaNI | GCATC | 4 cut(s) | 37, 1529, 1640, 1765 |
| SfcI | CTRYAG | 1 cut(s) | 438 |
| SfuI | TTCGAA | 1 cut(s) | 273 |
| SinI | GGWCC | 1 cut(s) | 1174 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 227, 455, 1244 |
| SsiI | CCGC | 4 cut(s) | 311, 358, 470, 537 |
| SspMI | CTAG | 4 cut(s) | 414, 732, 1043, 1640 |
| StyD4I | CCNGG | 2 cut(s) | 379, 1825 |
| StyI | CCWWGG | 1 cut(s) | 1177 |
| TaaI | ACNGT | 3 cut(s) | 344, 439, 975 |
| TaiI | ACGT | 2 cut(s) | 375, 707 |
| TaqI | TCGA | 3 cut(s) | 19, 273, 1383 |
| TatI | WGTACW | 5 cut(s) | 231, 344, 677, 1242, 1405 |
| TfiI | GAWTC | 5 cut(s) | 980, 1001, 1364, 1652, 1664 |
| Tru1I | TTAA | 5 cut(s) | 366, 660, 993, 1109, 1841 |
| Tru9I | TTAA | 5 cut(s) | 366, 660, 993, 1109, 1841 |
| TscAI | CASTG | 6 cut(s) | 267, 467, 1033, 1231, 1462, 1818 |
| TseFI | GTSAC | 1 cut(s) | 1451 |
| TseI | GCWGC | 4 cut(s) | 554, 853, 1418, 1754 |
| Tsp45I | GTSAC | 1 cut(s) | 1451 |
| TspGWI | ACGGA | 1 cut(s) | 304 |
| TspRI | CASTG | 6 cut(s) | 267, 467, 1033, 1231, 1462, 1818 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1393 |
| VpaK11BI | GGWCC | 1 cut(s) | 1174 |
| XapI | RAATTY | 5 cut(s) | 98, 159, 895, 1015, 1278 |
| XceI | RCATGY | 5 cut(s) | 155, 432, 678, 832, 1243 |
| XmnI | GAANNNNTTC | 1 cut(s) | 269 |
| XspI | CTAG | 4 cut(s) | 414, 732, 1043, 1640 |
| Zsp2I | ATGCAT | 2 cut(s) | 1544, 1851 |