Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017399.1

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

1946 .. 2317

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017399.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggtccacacccatctcctcaaaaccgggttcttctccaacgtctacgcagccaccgctctcacggaagcttccatgaagctcaacctcttggacaatgcactcaaagtgttcgatgaaatgcctcaccgaaacttggcacccttaaacactgtgatttccaggttgttgcataatggacatcgcagagaggctttaaaggtgtgcaagagcgttggttttggagggctcgggttgaattcggttagtatagctagtgtgttttcggcgtgtgacaatgcgaagcaggggatgggaatggattgcgtggcggtgaagctcggggttaagagtgatgtttatgttgctacctcagctgtgagtatgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

123

Amino Acids

13.19

Weight (kDa)

9.12

Isoelectric Point (pI)

27.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	2 cut(s)	57, 311
AcsI	RAATTY	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	5 cut(s)	71, 82, 254, 319, 356
AluI	AGCT	5 cut(s)	71, 82, 254, 319, 356
Ama87I	CYCGRG	2 cut(s)	230, 320
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	119, 325
AvaI	CYCGRG	2 cut(s)	230, 320
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	21, 286
BciT130I	CCWGG	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	28
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	28, 163
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	230, 320
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	28, 163
Bpu10I	CCTNAGC	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	139
BsiHKCI	CYCGRG	2 cut(s)	230, 320
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	136
BsoBI	CYCGRG	2 cut(s)	230, 320
Bsp1286I	GDGCHC	1 cut(s)	231
BspACI	CCGC	2 cut(s)	57, 311
BspCNI	CTCAG	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 353
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	26, 161
BstV1I	GCAGC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	8 cut(s)	53, 71, 82, 194, 229, 254, 319, 356
CviKI_1	RGCY	8 cut(s)	53, 71, 82, 194, 229, 254, 319, 356
DdeI	CTNAG	1 cut(s)	352
DraI	TTTAAA	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	2 cut(s)	230, 320
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	1 cut(s)	79
FaiI	YATR	5 cut(s)	77, 174, 251, 342, 365
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	69
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	119, 325
Hpy166II	GTNNAC	2 cut(s)	7, 46
Hpy8I	GTNNAC	2 cut(s)	7, 46
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	101, 172, 207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 353
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	79
LpnPI	CCDG	4 cut(s)	40, 148, 175, 272
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	272
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	6 cut(s)	29, 98, 135, 184, 218, 361
MseI	TTAA	3 cut(s)	146, 197, 327
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	28, 163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	56, 353
NciI	CCSGG	1 cut(s)	28
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	146, 197, 327
SatI	GCNGC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	28, 163
SduI	GDGCHC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	2 cut(s)	57, 311
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	26, 161
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	238
Tru1I	TTAA	3 cut(s)	146, 197, 327
Tru9I	TTAA	3 cut(s)	146, 197, 327
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	92, 132
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.