Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

21375101 .. 21390770

Gene Structure 15670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG193800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAACTTTGAGAAAAGAGCACCAGCTCTTATGGACAAACTTGCTCAAAGCCCTTCTAATGGGGCCTTACTTTGTTTTGCGTGTAGTTCTTCAATCAACTTTTGGGTATGAGACTTATCCTGGGTTTCATGCAAGTGTGAAAGAGAAGATTGAAGCTGATACCAAAGAGTGGAAGAAATATCAAAAGAGGGAGGAAGAGAGAAGACGAAGGAAGGAAGATGAAGAGCAGCATGAAGATAAGGAAGCGCGCAAGACGACGCTTGATGTGAATCTTGATTCTTGGTGGGCATTCATCGTGGGCACTGTAGCATCTGAGACCTTATGCCAAGACCACTCCGCTTCTTTCCCCCCTCACAAATTCACATTTCCTCCTATTCTCAAAGCCTGTGCCAAGCTTCGATCAGCCCCTCAAGCTCAAATGGTCTGCACCCATCTCCTCAAAACTGGGTTCTTCTCCAACGTCTACGTAGCCACTGCTCTCACGAATGCTTCAATGAAGCTCAGCTTCATGGACGATGCACTCAAGGTGTTTGACGAAATGCCTCACCGAAACTTGGCTCCCACAAACACTGTGGTTTTCGGGTTGTTGCACAATGGACATCGCAGAGAGGCTTTAAAGGTGTGCAAGAGTGTTGGTTTTGAGGGCTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

218

Amino Acids

24.96

Weight (kDa)

8.97

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	465
AccII	CGCG	1 cut(s)	250
AciI	CCGC	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	61, 171, 556
AgsI	TTSAA	3 cut(s)	95, 155, 495
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	6 cut(s)	28, 158, 397, 416, 502, 507
AluI	AGCT	6 cut(s)	28, 158, 397, 416, 502, 507
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	107, 311
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	250, 252
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	650
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	107, 311
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	1 cut(s)	230
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	66, 561
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	320, 508
BmuI	ACTGGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	649
Bpu1102I	GCTNAGC	1 cut(s)	503
BpuEI	CTTGAG	2 cut(s)	396, 509
BsaAI	YACGTR	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 171, 556
Bse1I	ACTGG	1 cut(s)	451
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	122
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	61, 171, 556
BseMII	CTCAG	2 cut(s)	306, 517
BseNI	ACTGG	1 cut(s)	451
BsePI	GCGCGC	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	61, 171, 556
BsmAI	GTCTC	2 cut(s)	107, 311
BsmI	GAATGC	2 cut(s)	290, 493
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	311
Bsp1286I	GDGCHC	3 cut(s)	24, 305, 650
Bsp143I	GATC	1 cut(s)	401
Bsp1720I	GCTNAGC	1 cut(s)	503
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	2 cut(s)	307, 516
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	66, 561
BspQI	GCTCTTC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	1 cut(s)	122
BssHII	GCGCGC	1 cut(s)	248
BssMI	GATC	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	307, 574
Bst6I	CTCTTC	2 cut(s)	192, 219
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	315, 503, 649
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	250, 252
BstKTI	GATC	1 cut(s)	404
BstMAI	GTCTC	2 cut(s)	107, 311
BstMBI	GATC	1 cut(s)	401
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	305
BstSNI	TACGTA	1 cut(s)	469
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	587
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	3 cut(s)	303, 474, 570
Cac8I	GCNNGC	1 cut(s)	250
CfoI	GCGC	2 cut(s)	250, 252
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	3 cut(s)	131, 233, 511
DdeI	CTNAG	3 cut(s)	315, 503, 649
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
DraI	TTTAAA	1 cut(s)	618
Eam1104I	CTCTTC	2 cut(s)	192, 219
EarI	CTCTTC	2 cut(s)	192, 219
Eco105I	TACGTA	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	650
Eco31I	GGTCTC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	650
FaeI	CATG	3 cut(s)	134, 236, 514
FaiI	YATR	6 cut(s)	34, 111, 132, 234, 325, 512
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	3 cut(s)	130, 232, 510
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	1 cut(s)	230
GlaI	GCGC	2 cut(s)	249, 251
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	67
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	250, 252
Hin1II	CATG	3 cut(s)	134, 236, 514
Hin6I	GCGC	2 cut(s)	248, 250
HinP1I	GCGC	2 cut(s)	248, 250
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	271, 278
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	275, 484
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	3 cut(s)	65, 204, 208
HpyCH4III	ACNGT	2 cut(s)	307, 574
HpyCH4IV	ACGT	2 cut(s)	462, 468
HpyCH4V	TGCA	5 cut(s)	134, 429, 521, 592, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	3 cut(s)	315, 503, 649
HpySE526I	ACGT	2 cut(s)	462, 468
Hsp92II	CATG	3 cut(s)	134, 236, 514
HspAI	GCGC	2 cut(s)	248, 250
Kzo9I	GATC	1 cut(s)	401
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	6 cut(s)	38, 108, 135, 400, 432, 636
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	320, 508
MaeII	ACGT	2 cut(s)	462, 468
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	9 cut(s)	83, 160, 187, 209, 216, 230, 236, 248, 445
MhlI	GDGCHC	3 cut(s)	24, 305, 650
MluCI	AATT	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	9 cut(s)	183, 187, 363, 381, 420, 449, 555, 604, 637
MseI	TTAA	1 cut(s)	617
MslI	CAYNNNNRTG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	2 cut(s)	290, 493
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	3 cut(s)	134, 236, 514
NlaIV	GGNNCC	2 cut(s)	66, 561
PauI	GCGCGC	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	219
PctI	GAATGC	2 cut(s)	290, 493
PfeI	GAWTC	2 cut(s)	271, 278
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	231
Ppu21I	YACGTR	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	66, 561
PspPI	GGNCC	1 cut(s)	65
PteI	GCGCGC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	401
Sau96I	GGNCC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	3 cut(s)	24, 305, 650
SfaNI	GCATC	2 cut(s)	320, 508
SfcI	CTRYAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	411, 524
SmoI	CTYRAG	2 cut(s)	411, 524
SnaBI	TACGTA	1 cut(s)	469
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	307, 574
TaiI	ACGT	2 cut(s)	465, 471
TaqI	TCGA	1 cut(s)	400
TasI	AATT	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	271, 278
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	3 cut(s)	310, 481, 577
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	6 cut(s)	119, 237, 249, 283, 499, 512
TspRI	CASTG	3 cut(s)	310, 481, 577
Van91I	CCANNNNNTGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XmiI	GTMKAC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.