Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

66270305 .. 66270622

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG469200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTCCACACCCATCTCCTCAAAACTGGGTTCTTCTTCGACGTCTACGCAACCACCGCTCTTATGGACGCTTCCATGAAGCTCAACCTCATGGACGATGCACTCAAGGTGTTCAACGAAATACCTCGCCGAAACTTGGCTCCCATAAACATTATGATTTCCTGGTTGGTACATAATGGACATCGCAGAGAGGCTTTAAAGGTGTTCAAGAGCGTTCGTTTTTTAGGGTTCGGGTTGAATTTGGTTACTATAGCTAGTGCGTTTTCGGCGTGTGACAATGCGAAGAAGGGGATGGGAATGCATTGCGTGGTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

105

Amino Acids

11.77

Weight (kDa)

9.62

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	115, 208, 238
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	82, 254
AluI	AGCT	2 cut(s)	82, 254
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BccI	CCATC	2 cut(s)	21, 286
BciT130I	CCWGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 266
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	2 cut(s)	76, 91
CviJI	RGCY	4 cut(s)	82, 140, 194, 254
CviKI_1	RGCY	4 cut(s)	82, 140, 194, 254
CviQI	GTAC	1 cut(s)	170
DraI	TTTAAA	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	303
FaeI	CATG	2 cut(s)	79, 94
FaiI	YATR	7 cut(s)	65, 77, 92, 146, 155, 174, 251
FatI	CATG	2 cut(s)	75, 90
FblI	GTMKAC	1 cut(s)	45
FokI	GGATG	1 cut(s)	304
FspBI	CTAG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	79, 94
Hpy166II	GTNNAC	2 cut(s)	7, 46
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	7, 46
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	101, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 266
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	79, 94
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	12, 148, 175
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	244, 272
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	3 cut(s)	25, 28, 295
MluCI	AATT	1 cut(s)	238
MnlI	CCTC	4 cut(s)	29, 98, 135, 184
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	56, 266
NlaIII	CATG	2 cut(s)	79, 94
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	303
PctI	GAATGC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	7 cut(s)	45, 84, 90, 111, 127, 204, 256
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	161
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	43
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.