Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

9978173 .. 9978490

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG133700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTCCACATCTATCTCCTCAAAACTGGGTTCTTCTCCGACGTCTACGCAGCCACCGCTCTCACGGACGCTTCCATGAAGCTCAACCTCATGGACGATGCACTCAAGGTGTTCGACGAAATGCCTCACCGAAACTTGGCTCACGTAAACACTGTGATTTCCGGGTTGTTGCATAATGGACATCGCAGAGAGGCTTTAAAGGTGTTCAAGAGCGTTGGTTTTGGAGGGTTCGGGTTGAATTCGGTTACCATAGCTAGTGTGTTTTCGACGTGTGATAATGCTAAGCAGGGGATGGGAATGCATTGCGTGGCGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

105

Amino Acids

11.4

Weight (kDa)

7.87

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	2 cut(s)	57, 311
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	208, 238
AjiI	CACGTC	1 cut(s)	270
AluBI	AGCT	2 cut(s)	82, 254
AluI	AGCT	2 cut(s)	82, 254
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	51
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	2 cut(s)	57, 311
BsrBI	CCGCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	77
CviAII	CATG	2 cut(s)	76, 91
CviJI	RGCY	5 cut(s)	53, 82, 140, 194, 254
CviKI_1	RGCY	5 cut(s)	53, 82, 140, 194, 254
DdeI	CTNAG	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	4
Eco91I	GGTNACC	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	303
FaeI	CATG	2 cut(s)	79, 94
FaiI	YATR	4 cut(s)	77, 92, 174, 251
FatI	CATG	2 cut(s)	75, 90
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	79, 94
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	3 cut(s)	7, 46, 148
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	3 cut(s)	7, 46, 148
Hpy99I	CGWCG	3 cut(s)	44, 119, 271
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	3 cut(s)	42, 144, 269
HpyCH4V	TGCA	3 cut(s)	101, 172, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	3 cut(s)	42, 144, 269
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	79, 94
LpnPI	CCDG	3 cut(s)	12, 175, 272
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	3 cut(s)	42, 144, 269
MaeIII	GTNAC	1 cut(s)	244
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	5 cut(s)	29, 98, 135, 184, 218
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	1 cut(s)	197
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	163
NlaIII	CATG	2 cut(s)	79, 94
NsiI	ATGCAT	1 cut(s)	303
PctI	GAATGC	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	8 cut(s)	45, 84, 90, 111, 147, 204, 256, 272
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	2 cut(s)	57, 311
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	3 cut(s)	45, 147, 272
TaqI	TCGA	2 cut(s)	114, 266
TasI	AATT	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	43
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.