Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001159.1

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

162686 .. 163003

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001159.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggtccacacccatctcctcaaaactgggttcttcttcgacgtctacgcaaccaccgctcttatggacgcttccatgaagctcaacctcatggacgatgcactcaaggtgttcaacgaaatacctcgccgaaacttggctcccataaacattatgatttcctggttggtacataatggacatcgcagagaggctttaaaggtgttcaagagcgttggttttttagggttcgggttgaatttggttactatagctagtgcgttttcggcgtgtgacaatgcgaagaaggggatgggaatgcattgcgtggtggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

105

Amino Acids

11.67

Weight (kDa)

9.39

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	115, 208, 238
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	82, 254
AluI	AGCT	2 cut(s)	82, 254
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BccI	CCATC	2 cut(s)	21, 286
BciT130I	CCWGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 266
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	2 cut(s)	76, 91
CviJI	RGCY	4 cut(s)	82, 140, 194, 254
CviKI_1	RGCY	4 cut(s)	82, 140, 194, 254
CviQI	GTAC	1 cut(s)	170
DraI	TTTAAA	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	303
FaeI	CATG	2 cut(s)	79, 94
FaiI	YATR	7 cut(s)	65, 77, 92, 146, 155, 174, 251
FatI	CATG	2 cut(s)	75, 90
FblI	GTMKAC	1 cut(s)	45
FokI	GGATG	1 cut(s)	304
FspBI	CTAG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	79, 94
Hpy166II	GTNNAC	2 cut(s)	7, 46
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	7, 46
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	101, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 266
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	79, 94
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	12, 148, 175
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	244, 272
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	3 cut(s)	25, 28, 295
MluCI	AATT	1 cut(s)	238
MnlI	CCTC	4 cut(s)	29, 98, 135, 184
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	56, 266
NlaIII	CATG	2 cut(s)	79, 94
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	303
PctI	GAATGC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	7 cut(s)	45, 84, 90, 111, 127, 204, 256
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	161
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	43
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.