Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

57773481 .. 57774546

Gene Structure 1066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGCTCAACCTCATGGACGATGCACTCAAGGTGTTCGACGAAATGCCTCGCCAAAACTTGGCTCCCGTAAACACTGTAATTTTCGGGTTGTTGCATAATGGACCTCGCAGAGAGGCTTTAAAGGTGTTCAAGAGCATTGATTTTGGAGGAATGTGCCAAGACCACTCCACTTCTTTCCCCCCTCACAAATTCACATTTCCTCATATTCTTAAAGCCTGTGCCAAGCTCCGATCAGCCCCTCAAGTCCAAACGTTCCACACCTATCTCCTCAAAACTGGATTCTTCTCTGACGTTTACGCAACCACTACTCTCATAGACGCTTCCATGAAGCTCAACCTCATGGACGATGCACTCAAGGTGTTCGACGAAATGCCTCACCAAAACTTGGCTCCCGTAAACACTGTGATTTCCTGGTTGTTGCATAATAGACCTCACAGAGAGGCTTTAAAGGTGTTCAAGAGCATTGGTTTTGGAAGGTTCGGGTTGAATTCGGTTACTATAGCTAGTGTGTTTTCGGCGTGTGACAATGTAAAGCAGGAGATAGGAATGCGTTGCTTGGTGGTGTATCTCGGGGTTGAGAGTGATGTTTATGTTGCTACCTTAGCTATGAGTATGTATTCGAGCTGTGGGGAGTTGGTTTCTGCTGCAAAGTTGTTTAAACATATGCTCGTCAAGAATGTGGTGAGCTATAATGCTTTTATAACAGGGCTTTTGCATAATGGGGTTCCAAGGGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAAAGGTGAAAATCTGAATTCAGTGACATTGTTTTCAATTCTTTTTGTTGTGCTAGTGTTTTGTATCTCCGATTTGGCAGGCAGGTGCATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

289

Amino Acids

32.12

Weight (kDa)

9.08

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	704
AarI	CACCTGC	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	843
AccB7I	CCANNNNNTGG	2 cut(s)	61, 388
AclI	AACGTT	1 cut(s)	254
AcsI	RAATTY	3 cut(s)	191, 490, 787
AfiI	CCNNNNNNNGG	2 cut(s)	61, 388
AgsI	TTSAA	4 cut(s)	133, 460, 490, 807
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	7 cut(s)	7, 229, 334, 506, 608, 627, 690
AluI	AGCT	7 cut(s)	7, 229, 334, 506, 608, 627, 690
Ama87I	CYCGRG	1 cut(s)	572
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	3 cut(s)	191, 490, 787
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	371, 697, 788
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	634
BciT130I	CCWGG	1 cut(s)	415
BfaI	CTAG	2 cut(s)	507, 824
BfmI	CTRYAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	843
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	3 cut(s)	66, 393, 729
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	2 cut(s)	13, 340
Bpu10I	CCTNAGC	1 cut(s)	604
BpuEI	CTTGAG	3 cut(s)	14, 228, 341
BsaJI	CCNNGG	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 388
Bse1I	ACTGG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	731
BseGI	GGATG	1 cut(s)	751
BseLI	CCNNNNNNNGG	2 cut(s)	61, 388
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	634
BsiHKCI	CYCGRG	1 cut(s)	572
BslI	CCNNNNNNNGG	2 cut(s)	61, 388
BsmI	GAATGC	1 cut(s)	555
BsoBI	CYCGRG	1 cut(s)	572
Bsp143I	GATC	1 cut(s)	233
BspLI	GGNNCC	3 cut(s)	66, 393, 729
BspMI	ACCTGC	1 cut(s)	843
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	731
BssMI	GATC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	731
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	79, 406
BstC8I	GCNNGC	1 cut(s)	850
BstDEI	CTNAG	1 cut(s)	604
BstF5I	GGATG	1 cut(s)	751
BstKTI	GATC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	751
BtsIMutI	CAGTG	3 cut(s)	75, 402, 798
BveI	ACCTGC	1 cut(s)	843
Cac8I	GCNNGC	1 cut(s)	850
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	329
CviAII	CATG	5 cut(s)	16, 328, 343, 768, 859
DdeI	CTNAG	1 cut(s)	604
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
DraI	TTTAAA	3 cut(s)	123, 450, 661
Eco130I	CCWWGG	1 cut(s)	731
Eco47I	GGWCC	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	572
EcoRI	GAATTC	2 cut(s)	490, 787
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	731
ErhI	CCWWGG	1 cut(s)	731
FaeI	CATG	5 cut(s)	19, 331, 346, 771, 862
FatI	CATG	5 cut(s)	15, 327, 342, 767, 858
FauNDI	CATATG	1 cut(s)	666
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	1 cut(s)	758
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	2 cut(s)	507, 824
GluI	GCNGC	1 cut(s)	648
HgaI	GACGC	1 cut(s)	329
Hin1II	CATG	5 cut(s)	19, 331, 346, 771, 862
HinfI	GANTC	1 cut(s)	282
HphI	GGTGA	3 cut(s)	371, 697, 788
Hpy166II	GTNNAC	3 cut(s)	73, 298, 400
Hpy188I	TCNGA	4 cut(s)	233, 292, 786, 841
Hpy188III	TCNNGA	3 cut(s)	133, 460, 676
Hpy8I	GTNNAC	3 cut(s)	73, 298, 400
Hpy99I	CGWCG	2 cut(s)	44, 371
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	2 cut(s)	79, 406
HpyCH4IV	ACGT	2 cut(s)	254, 294
HpyCH4V	TGCA	7 cut(s)	26, 97, 353, 424, 650, 718, 858
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	1 cut(s)	604
HpySE526I	ACGT	2 cut(s)	254, 294
Hsp92II	CATG	5 cut(s)	19, 331, 346, 771, 862
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	3 cut(s)	70, 234, 397
LpnPI	CCDG	8 cut(s)	232, 264, 400, 427, 524, 693, 834, 838
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	2 cut(s)	13, 340
MaeI	CTAG	2 cut(s)	507, 824
MaeII	ACGT	2 cut(s)	254, 294
MaeIII	GTNAC	3 cut(s)	496, 524, 793
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	277
MluCI	AATT	5 cut(s)	81, 191, 490, 787, 807
MmeI	TCCRAC	1 cut(s)	723
MseI	TTAA	5 cut(s)	122, 213, 449, 660, 753
MspR9I	CCNGG	1 cut(s)	415
MssI	GTTTAAAC	1 cut(s)	661
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	1 cut(s)	605
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	5 cut(s)	19, 331, 346, 771, 862
NlaIV	GGNNCC	3 cut(s)	66, 393, 729
NmuCI	GTSAC	2 cut(s)	524, 793
NspI	RCATGY	1 cut(s)	771
PaqCI	CACCTGC	1 cut(s)	843
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	282
PflMI	CCANNNNNTGG	2 cut(s)	61, 388
PkrI	GCNGC	1 cut(s)	649
PmeI	GTTTAAAC	1 cut(s)	661
PsiI	TTATAA	1 cut(s)	704
Psp1406I	AACGTT	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	3 cut(s)	66, 393, 729
PspPI	GGNCC	1 cut(s)	104
SaqAI	TTAA	5 cut(s)	122, 213, 449, 660, 753
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	1 cut(s)	233
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	415
SfaNI	GCATC	2 cut(s)	13, 340
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	104
SmlI	CTYRAG	3 cut(s)	29, 243, 356
SmoI	CTYRAG	3 cut(s)	29, 243, 356
Sse9I	AATT	5 cut(s)	81, 191, 490, 787, 807
SspMI	CTAG	2 cut(s)	507, 824
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	731
TaaI	ACNGT	2 cut(s)	79, 406
TaiI	ACGT	2 cut(s)	257, 297
TaqI	TCGA	3 cut(s)	39, 366, 623
TasI	AATT	5 cut(s)	81, 191, 490, 787, 807
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	5 cut(s)	122, 213, 449, 660, 753
Tru9I	TTAA	5 cut(s)	122, 213, 449, 660, 753
TscAI	CASTG	3 cut(s)	82, 409, 798
TseFI	GTSAC	2 cut(s)	524, 793
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	2 cut(s)	524, 793
TspDTI	ATGAA	2 cut(s)	17, 344
TspRI	CASTG	3 cut(s)	82, 409, 798
Van91I	CCANNNNNTGG	2 cut(s)	61, 388
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	3 cut(s)	191, 490, 787
XceI	RCATGY	1 cut(s)	771
XspI	CTAG	2 cut(s)	507, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.