Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

68028941 .. 68029278

Gene Structure 338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33871

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAGAATGGATTGCGTGGCGGTGAAGCTCGGGGTTGAGAGTGATGTTTATGTTGCTACCTCAGCTGTGAGTATGTATTGGAGCTATGGGGAGTTGGTTTCTGCTGCAAAGTTGTTTGAACATATGCCTGTCAAGAATGTGGTAAGCTATAATGCTTTTATAACAGGGCTTTTGCATAATGGGGTTCCAAGAGTGGTGTTGGATGTGTTTAAGAAAATGAGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGGTTTCGGCAGGTGCATGGCTTGATCATGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

97

Amino Acids

10.73

Weight (kDa)

7.81

Isoelectric Point (pI)

17.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	45 - 85	2.3e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
AciI	CCGC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	4 cut(s)	28, 65, 84, 147
AluI	AGCT	4 cut(s)	28, 65, 84, 147
Ama87I	CYCGRG	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	244
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AsuHPI	GGTGA	2 cut(s)	34, 245
AvaI	CYCGRG	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	61
BseGI	GGATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	257
BssMI	GATC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	257
CciI	TCATGA	1 cut(s)	283
CviAII	CATG	3 cut(s)	225, 273, 284
CviJI	RGCY	6 cut(s)	28, 65, 84, 147, 169, 277
CviKI_1	RGCY	6 cut(s)	28, 65, 84, 147, 169, 277
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	244
FaeI	CATG	3 cut(s)	228, 276, 287
FatI	CATG	3 cut(s)	224, 272, 283
FauNDI	CATATG	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	228, 276, 287
HphI	GGTGA	2 cut(s)	34, 245
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	133, 284
HpyCH4V	TGCA	3 cut(s)	107, 175, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	3 cut(s)	228, 276, 287
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	3 cut(s)	141, 150, 252
Lsp1109I	GCAGC	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MluCI	AATT	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	70, 224
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	3 cut(s)	228, 276, 287
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	228
PagI	TCATGA	1 cut(s)	283
PaqCI	CACCTGC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	106
PsiI	TTATAA	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	280
SetI	ASST	7 cut(s)	30, 62, 67, 86, 149, 235, 271
Sse9I	AATT	1 cut(s)	244
SsiI	CCGC	1 cut(s)	20
TasI	AATT	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	250
TspRI	CASTG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	244
XceI	RCATGY	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.