Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Reverse (-)

7952279 .. 7953073

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGACGCTTCCATGAAGCTCAACCTCATGGACGATGCACTCAAGATGTTCGATGAAATGCCTCACCGAAACTTGCTTCCTATGTTTTCGGCATGTGACAATGCGAAGCAGGGGATGGGAATGCATTGCGTGGCAGTGAAGCTTAGGGTTGAGAGTGATGTTTATGTTGCTACCTCAGTTGTGAGTATGTTTTCGAGTTGTGGGGAGTTGGTTTCTGCAGCAAAGTTGTTTGAACATATGCCTATCAAGATTGTGCTGAGCTATCATGCTTTTATTACAAAGCTTTTGCAGAATGGGGTTCCAATTAAGGGTGGTGTTGGATGTGTGCATGGTTTGACCATGAAAGTTGAGAGGGGGATTGGCGCTATGACTAGAACAGTGCTTGTGAACATGTATTCCAAATGTGGATGTTGGCAGCTCGCATACCAAATATTCGAAGAAATATACGAAAATAGGAGTTTGTTCACATGGAATGCCATGATTGCAGGAATTATGTTGAATGAGCAGTGGGAGGAATTGGGCGGCGGAAGAGCTGCACCTCCCCATTTCAAATTAACCCCTACTTCTTCTCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

193

Amino Acids

21.34

Weight (kDa)

6.99

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	522, 525
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	233, 499, 550
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	6 cut(s)	19, 142, 261, 283, 418, 533
AluI	AGCT	6 cut(s)	19, 142, 261, 283, 418, 533
ApeKI	GCWGC	3 cut(s)	218, 415, 533
AspLEI	GCGC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	56
AsuII	TTCGAA	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	230, 427, 520
BccI	CCATC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	372, 577
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	366
BisI	GCNGC	4 cut(s)	219, 416, 523, 534
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	4 cut(s)	220, 417, 524, 535
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	124
BseGI	GGATG	3 cut(s)	120, 326, 413
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	189, 248
BseXI	GCAGC	3 cut(s)	230, 427, 520
BsgI	GTGCAG	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmI	GAATGC	2 cut(s)	126, 478
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	2 cut(s)	522, 525
BspCNI	CTCAG	2 cut(s)	188, 249
BspLI	GGNNCC	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	220
BspQI	GCTCTTC	1 cut(s)	523
BspT104I	TTCGAA	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	1 cut(s)	523
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	3 cut(s)	143, 175, 257
BstF5I	GGATG	3 cut(s)	120, 326, 413
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNSI	RCATGY	2 cut(s)	96, 394
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	230, 427, 520
BtsCI	GGATG	3 cut(s)	120, 326, 413
BtsI	GCAGTG	2 cut(s)	141, 512
BtsIMutI	CAGTG	3 cut(s)	141, 384, 512
Cac8I	GCNNGC	1 cut(s)	420
CfoI	GCGC	1 cut(s)	365
CseI	GACGC	1 cut(s)	14
CviAII	CATG	9 cut(s)	13, 28, 93, 266, 329, 340, 391, 468, 478
CviJI	RGCY	6 cut(s)	19, 142, 261, 283, 418, 533
CviKI_1	RGCY	6 cut(s)	19, 142, 261, 283, 418, 533
DdeI	CTNAG	3 cut(s)	143, 175, 257
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	126
FaeI	CATG	9 cut(s)	16, 31, 96, 269, 332, 343, 394, 471, 481
FatI	CATG	9 cut(s)	12, 27, 92, 265, 328, 339, 390, 467, 477
FauNDI	CATATG	1 cut(s)	237
Fnu4HI	GCNGC	4 cut(s)	219, 416, 523, 534
FokI	GGATG	3 cut(s)	127, 333, 420
Fsp4HI	GCNGC	4 cut(s)	219, 416, 523, 534
FspBI	CTAG	2 cut(s)	372, 577
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	4 cut(s)	219, 416, 523, 534
HaeII	RGCGCY	1 cut(s)	366
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	9 cut(s)	16, 31, 96, 269, 332, 343, 394, 471, 481
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HindIII	AAGCTT	2 cut(s)	140, 281
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	388, 465
Hpy188III	TCNNGA	2 cut(s)	43, 247
Hpy8I	GTNNAC	2 cut(s)	388, 465
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	7 cut(s)	38, 124, 218, 289, 328, 485, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	3 cut(s)	143, 175, 257
Hsp92II	CATG	9 cut(s)	16, 31, 96, 269, 332, 343, 394, 471, 481
HspAI	GCGC	1 cut(s)	363
LguI	GCTCTTC	1 cut(s)	523
LpnPI	CCDG	2 cut(s)	95, 471
Lsp1109I	GCAGC	3 cut(s)	230, 427, 520
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	372, 577
MaeIII	GTNAC	1 cut(s)	95
MboII	GAAGA	4 cut(s)	449, 540, 558, 565
MluCI	AATT	4 cut(s)	303, 489, 515, 551
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	35, 72, 184, 345, 505, 549
Mph1103I	ATGCAT	1 cut(s)	126
MseI	TTAA	2 cut(s)	306, 554
Mva1269I	GAATGC	2 cut(s)	126, 478
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeI	CATATG	1 cut(s)	237
NlaIII	CATG	9 cut(s)	16, 31, 96, 269, 332, 343, 394, 471, 481
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	126
NspI	RCATGY	2 cut(s)	96, 394
NspV	TTCGAA	1 cut(s)	435
PciI	ACATGT	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	523
PctI	GAATGC	2 cut(s)	126, 478
PkrI	GCNGC	4 cut(s)	220, 417, 524, 535
PscI	ACATGT	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	300
PstI	CTGCAG	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	523
SaqAI	TTAA	2 cut(s)	306, 554
SatI	GCNGC	4 cut(s)	219, 416, 523, 534
SetI	ASST	9 cut(s)	21, 27, 144, 176, 263, 285, 420, 535, 541
SfaNI	GCATC	1 cut(s)	25
SfcI	CTRYAG	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	303, 489, 515, 551
SsiI	CCGC	2 cut(s)	522, 525
SspI	AATATT	1 cut(s)	432
SspMI	CTAG	2 cut(s)	372, 577
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	3 cut(s)	51, 194, 435
TasI	AATT	4 cut(s)	303, 489, 515, 551
TauI	GCSGC	1 cut(s)	525
Tru1I	TTAA	2 cut(s)	306, 554
Tru9I	TTAA	2 cut(s)	306, 554
TscAI	CASTG	3 cut(s)	141, 384, 512
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	3 cut(s)	218, 415, 533
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	29, 69, 356
TspRI	CASTG	3 cut(s)	141, 384, 512
XceI	RCATGY	2 cut(s)	96, 394
XspI	CTAG	2 cut(s)	372, 577
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.