Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

8908677 .. 8909791

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0056800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATGCAGTCTGAAGAGGAGATGTTCATGGCGTCTTTGATCTGCAATTTGGAAGTTGATTGTGAGAAGCTTCTAGTCTGCAAATTTGATCTTGATTGTATAAAGACCCTGCATTTTGATACAGAGGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAGTGATGCTTCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACAATTGGAAATGTCTCAGGTAAAATTCGCAGCTGGTATTGGTTCTCAGAGTTTGGACTCAACCATGACAGCATGTCAAGAAACAGATACTGTGAGCGAATTGGCAGACATCACAAAAGCAATCATGTGGGCGGTAAAGACACGGAAGTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

139

Amino Acids

15.84

Weight (kDa)

5.29

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AciI	CCGC	1 cut(s)	396
AcsI	RAATTY	4 cut(s)	83, 167, 254, 288
AcuI	CTGAAG	2 cut(s)	33, 183
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	178
AhdI	GACNNNNNGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	70, 236, 297
AluI	AGCT	3 cut(s)	70, 236, 297
Alw26I	GTCTC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	354
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	294
ApoI	RAATTY	4 cut(s)	83, 167, 254, 288
AspS9I	GGNCC	1 cut(s)	159
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BbvI	GCAGC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	74, 135
BisI	GCNGC	1 cut(s)	295
BlsI	GCNGC	1 cut(s)	296
Bme1390I	CCNGG	1 cut(s)	215
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	184, 232
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	294, 324
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	306
BshFI	GGCC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	39, 88
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	2 cut(s)	293, 323
BspLI	GGNNCC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	2 cut(s)	39, 88
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	155, 356
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	280, 310
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	42, 91
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	39, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	1 cut(s)	21
CviAII	CATG	4 cut(s)	28, 329, 337, 389
CviJI	RGCY	4 cut(s)	70, 160, 236, 297
CviKI_1	RGCY	4 cut(s)	70, 160, 236, 297
DdeI	CTNAG	2 cut(s)	280, 310
DpnI	GATC	2 cut(s)	41, 90
DpnII	GATC	2 cut(s)	39, 88
DrdI	GACNNNNNNGTC	1 cut(s)	410
DriI	GACNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	33, 183
EcoRII	CCWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	247
FaeI	CATG	4 cut(s)	31, 332, 340, 392
FaiI	YATR	8 cut(s)	29, 101, 208, 330, 338, 390, 416, 418
FatI	CATG	4 cut(s)	27, 328, 336, 388
Fnu4HI	GCNGC	1 cut(s)	295
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	295
FspBI	CTAG	2 cut(s)	74, 135
GluI	GCNGC	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	160
HgaI	GACGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	31, 332, 340, 392
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	321
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	13, 313
Hpy188III	TCNNGA	2 cut(s)	92, 342
Hpy8I	GTNNAC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	155, 356
HpyCH4V	TGCA	7 cut(s)	7, 45, 81, 112, 173, 186, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	2 cut(s)	280, 310
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	31, 332, 340, 392
Kzo9I	GATC	2 cut(s)	39, 88
LpnPI	CCDG	7 cut(s)	122, 200, 202, 227, 246, 267, 283
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	2 cut(s)	184, 232
MaeI	CTAG	2 cut(s)	74, 135
MalI	GATC	2 cut(s)	41, 90
MboI	GATC	2 cut(s)	39, 88
MboII	GAAGA	1 cut(s)	26
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	7 cut(s)	46, 83, 167, 254, 267, 288, 363
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	2 cut(s)	10, 118
Mph1103I	ATGCAT	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	2 cut(s)	39, 88
NlaIII	CATG	4 cut(s)	31, 332, 340, 392
NlaIV	GGNNCC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	247
NspI	RCATGY	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	296
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	354
PvuII	CAGCTG	1 cut(s)	297
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	2 cut(s)	39, 88
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	5 cut(s)	72, 129, 238, 286, 299
SfaNI	GCATC	2 cut(s)	184, 232
Sse9I	AATT	7 cut(s)	46, 83, 167, 254, 267, 288, 363
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	2 cut(s)	74, 135
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	155, 356
TasI	AATT	7 cut(s)	46, 83, 167, 254, 267, 288, 363
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	196
XapI	RAATTY	4 cut(s)	83, 167, 254, 288
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	2 cut(s)	74, 135
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.