Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001126

Physical Location & Seq

Genomic Coordinates Forward (+)

61277772 .. 61279577

Gene Structure 1806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGCTTATATACTCAACACCACTCCGCTTCTTTCCCCCTCACAAATTCACATTCCCTCCACTTCTCAAAGCCTGTGCCAAGCTCCGATCAGCCCCTCAAGCCCAAATGGTCCACACCCATCTCCTCAAAACCGGGTTCTTCTCCCACGTCTACTCAGCCACGGCTCTCACCGACGCTTACATGAAGCTCAATCTCATGGACGATGCGCTCAAGGTGTTCGACGAAATGCCTGACCGAAACTTGGCTTCGGTAAACGCTGTGATTTCCGGGCTGTTGCATAATGGACATCGCAGAGAGGCTTTAAAGGTGTTCAAGAGCGTTGGTTTTGGAGGGTTCGGGTTGAATGCGGTTACTATAGCCAGTGTGCTTTCGGCCTGTGACAATGCCAAGGAGGGGATGGGAATGCATTGCGCGGCGGTGAAGCTCGGGGTTGAGAGTGATGTTTATGTTGCTACATCAGCTGTGAGTATGTATTCGAGCTGTGGAGAGTTGGTTTCTGCTGCAAAGTTGTTTGAAGATATGCCTGTCAGGAATGTGGTGAGCTATAATGCTTTTATAACAGGGCTTTTGCAGAATGGGGTTCCGCGGGTGGTCTTGGATGTGTTCAAGAAAATGGGAGCATGTAGAGGTGAAAATCCGAATTCAGTGACATTGGTTTCGGTTCTTTCTGCTTGTGCTAGTGTTTTGTATCTCCGATTTGGCAGGCAGGTTCATGGTTTGATCATGAAAATTGAGAATGGGATTGATGCTATGACCGGAACAGCGCTTGTGGACATGTATTCCAAGTGTGGGTGTTGGCAGCTCGCGTACCAAGTTTTCGAAGGACTAAATGAAACAAGGACCTTGTTTATATGGAATGCCATGCTTGCAGGAATGATGTTGAATGCGCAGTGGGAGATTGCTGTTGAGCTTTTTGAACAGCTAGAATCTGAAGGGTTTAAGCCTGATTCAGTGACTTGGAATTCAATGATCAGTGGGTTTTCACAACTAGGGATGGGAAATGAAGCTTTCAAGTATTTTAGGAGAATGCGATCGACTGGTGTAGCTCCGAGTTTGAAATCTGTCACTAGTCTTTTGCAAGCCTGTGCAGATTCATCTGCTCTGCAATGTGGACAAGAGGTTCATGGGCATGCAATTAGGACTGATATTAACAGTGATCTGTTCTTTTCAACTGCTCTCATTGACATGTACATGAAATGTGGGCAGTCTTCTTGGGCAAGAAGAGTTTTTGATTCCTTTCATGTAAAACCTGACGATCCAGCATTTTGGAATGCAACAATATCTGGGTATGGAAGAGAAGGAGAGAATGAATCTGCATTTCAAATATTTGACCAGATGCTCGAAGAAAAAGTACAACCAAATGCAGCAACTTTTATAAGTCTTCTATCTATGTGTAGTCACAGTGGTTTAGTTGACAAGGGATGGCAAATTTTTAGGATGATGGATAGAGATTTTGGAATGAAACCAGATCCGAAACATTATGGTTGTATGATTGACCTTTTAGGTAGATCAGGCAGGTTGGATGAAGCCCGGGAATTAACACACGAGTTGTCAGAGCCTTCTGGATCAGTTTTTGCTTCTTTGCTAGGTGCTTGCGAGTCCCATTTAAATCTAGAACTGGGGAAAGAAATGGCCATAAAACTTTCAGAATTAGAGCCAGAGAACCCTACACCTTTCCTGATACTGTCCAAGATATATGCTGGGCTTGGGAGGTGGAAGGATGCAGAAATCATTAGGGGAATGATGGATGATCAAAAGTCAAGAAAGCTCCCTGGCTTTAGCTTATTACAATTGCATGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

601

Amino Acids

66.45

Weight (kDa)

6.26

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	177 - 226	2.8e-07	PPR repeat family
PPR_2	PF13041	283 - 328	1.2e-10	PPR repeat family
PPR_long	PF17177	298 - 411	8.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	304 - 364	2.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	312 - 344	2.9e-07	PPR repeat
PPR_2	PF13041	315 - 363	1.3e-11	PPR repeat family
PPR	PF01535	318 - 347	1.1e-08	PPR repeat
PPR_2	PF13041	422 - 466	2.5e-10	PPR repeat family
PPR_3	PF13812	424 - 465	8.8e-06	Pentatricopeptide repeat domain
E_motif	PF20431	535 - 596	2.2e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02750
fragaria_vesca	FvH4_4g31750 FvH4_4g31750 FvH4_4g31750
malus_domestica	MD16G1077500.v1.1
prunus_persica	Prupe.1G269600_v2.0.a1
pyrus_communis	pycom16g06680
rosa_chinensis	RchiOBHm_Chr3g0480041 RchiOBHm_Chr4g0440351 RchiOBHm_Chr5g0020671 RchiOBHm_Chr5g0027821 RchiOBHm_Chr5g0045351 RchiOBHm_Chr5g0062441 RchiOBHm_Chr6g0278731
rosa_laevigata	RLG00000006189 RLG00000009789 RLG00000009916 RLG00000013392 RLG00000013526 RLG00000013972 RLG00000020257 RLG00000031746 RLG00000031753 RLG00000033045 RLG00000033161
rosa_multiflora	Rmu_co8052728.1_g000001 Rmu_sc0001159.1_g000033 Rmu_sc0001685.1_g000045 Rmu_sc0003684.1_g000002 Rmu_sc0004520.1_g000016 Rmu_sc0012764.1_g000009 Rmu_sc0017399.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343960 Rroxscaffold_5G00381230
rosa_rugosa	Rorug02G0009200 Rorug04G0056800 Rorug04G0056900 Rorug04G0325800 Rorug04G0335700
rosa_samantha	Rh2BG469200 Rh3CG261100 Rh3DG257000 Rh4AG376800 Rh4BG090100 Rh4BG389800 Rh4CG404600 Rh4DG383500 Rh5AG303800 Rh5AG409600 Rh5BG076900 Rh5BG193800 Rh5BG193900 Rh5BG199300 Rh5CG163100 Rh5CG214100 Rh5DG322500 Rh7BG133700
rosa_wichuraiana	Rw4G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	557, 1376
Acc16I	TGCGCA	1 cut(s)	888
Acc36I	ACCTGC	2 cut(s)	697, 1506
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	3 cut(s)	413, 586, 806
AciI	CCGC	6 cut(s)	25, 347, 413, 416, 584, 586
AclWI	GGATC	3 cut(s)	1250, 1463, 1573
AcoI	YGGCCR	1 cut(s)	1632
AcsI	RAATTY	4 cut(s)	44, 640, 961, 1428
AcuI	CTGAAG	1 cut(s)	951
AfaI	GTAC	3 cut(s)	809, 1190, 1353
AfeI	AGCGCT	1 cut(s)	765
AfiI	CCNNNNNNNGG	3 cut(s)	241, 393, 789
AflIII	ACRYGT	2 cut(s)	774, 1185
AhlI	ACTAGT	1 cut(s)	1067
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	1771
AloI	GAACNNNNNNTCC	2 cut(s)	1104, 1136
AlwI	GGATC	3 cut(s)	1250, 1463, 1573
Ama87I	CYCGRG	2 cut(s)	425, 1530
Aor51HI	AGCGCT	1 cut(s)	765
AoxI	GGCC	2 cut(s)	372, 1632
ApeKI	GCWGC	3 cut(s)	500, 799, 1364
ApoI	RAATTY	4 cut(s)	44, 640, 961, 1428
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AspLEI	GCGC	4 cut(s)	208, 413, 766, 889
AspS9I	GGNCC	2 cut(s)	109, 840
AsuC2I	CCSGG	4 cut(s)	133, 268, 1531, 1532
AsuHPI	GGTGA	4 cut(s)	160, 430, 550, 641
AsuII	TTCGAA	1 cut(s)	819
AvaI	CYCGRG	2 cut(s)	425, 1530
AvaII	GGWCC	2 cut(s)	109, 840
BalI	TGGCCA	1 cut(s)	1634
BarI	GAAGNNNNNNTAC	2 cut(s)	1335, 1367
BauI	CACGAG	1 cut(s)	1544
BbsI	GAAGAC	2 cut(s)	1200, 1373
BbvI	GCAGC	3 cut(s)	487, 811, 1376
BccI	CCATC	6 cut(s)	126, 391, 988, 1416, 1435, 1738
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	1773
BclI	TGATCA	3 cut(s)	720, 969, 1750
BcnI	CCSGG	4 cut(s)	133, 268, 1531, 1532
BcuI	ACTAGT	1 cut(s)	1067
BfaI	CTAG	6 cut(s)	678, 923, 989, 1068, 1586, 1613
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	767
BfuAI	ACCTGC	2 cut(s)	697, 1506
BisI	GCNGC	4 cut(s)	414, 501, 800, 1365
BlsI	GCNGC	4 cut(s)	415, 502, 801, 1366
Bme1390I	CCNGG	5 cut(s)	133, 268, 1531, 1532, 1773
Bme18I	GGWCC	2 cut(s)	109, 840
BmeT110I	CYCGRG	2 cut(s)	425, 1530
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	109, 840
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	5 cut(s)	133, 268, 1531, 1532, 1773
BmrI	ACTGGG	1 cut(s)	1628
BmsI	GCATC	4 cut(s)	193, 736, 1326, 1711
BmuI	ACTGGG	1 cut(s)	1628
BpiI	GAAGAC	2 cut(s)	1200, 1373
Bpu14I	TTCGAA	1 cut(s)	819
BpuEI	CTTGAG	2 cut(s)	81, 194
BpuMI	CCSGG	4 cut(s)	133, 268, 1531, 1532
BsaJI	CCNNGG	5 cut(s)	159, 387, 584, 1530, 1771
BsaWI	WCCGGW	1 cut(s)	755
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 393, 789
Bse1I	ACTGG	3 cut(s)	360, 1042, 1623
Bse3DI	GCAATG	2 cut(s)	406, 1112
BseBI	CCWGG	1 cut(s)	1773
BseDI	CCNNGG	5 cut(s)	159, 387, 584, 1530, 1771
BseGI	GGATG	8 cut(s)	402, 604, 999, 1427, 1443, 1528, 1726, 1753
BseLI	CCNNNNNNNGG	3 cut(s)	241, 393, 789
BseMI	GCAATG	2 cut(s)	406, 1112
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	3 cut(s)	360, 1042, 1623
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	487, 811, 1376
BseYI	CCCAGC	1 cut(s)	1700
BsgI	GTGCAG	1 cut(s)	1107
Bsh1236I	CGCG	3 cut(s)	413, 586, 806
Bsh1285I	CGRYCG	1 cut(s)	1034
BshFI	GGCC	2 cut(s)	374, 1634
BsiEI	CGRYCG	1 cut(s)	1034
BsiHKCI	CYCGRG	2 cut(s)	425, 1530
BsiSI	CCGG	4 cut(s)	132, 267, 756, 1531
BslFI	GGGAC	1 cut(s)	1585
BslI	CCNNNNNNNGG	3 cut(s)	241, 393, 789
BsmFI	GGGAC	1 cut(s)	1585
BsmI	GAATGC	6 cut(s)	349, 408, 862, 889, 1032, 1276
BsnI	GGCC	2 cut(s)	374, 1634
BsoBI	CYCGRG	2 cut(s)	425, 1530
Bsp119I	TTCGAA	1 cut(s)	819
Bsp1407I	TGTACA	1 cut(s)	1188
BspACI	CCGC	6 cut(s)	25, 347, 413, 416, 584, 586
BspANI	GGCC	2 cut(s)	374, 1634
BspCNI	CTCAG	1 cut(s)	167
BspFNI	CGCG	3 cut(s)	413, 586, 806
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	1 cut(s)	582
BspMI	ACCTGC	2 cut(s)	697, 1506
BspPI	GGATC	3 cut(s)	1250, 1463, 1573
BspT104I	TTCGAA	1 cut(s)	819
BsrDI	GCAATG	2 cut(s)	406, 1112
BsrGI	TGTACA	1 cut(s)	1188
BsrI	ACTGG	3 cut(s)	360, 1042, 1623
BssECI	CCNNGG	5 cut(s)	159, 387, 584, 1530, 1771
BssSI	CACGAG	1 cut(s)	1544
BssT1I	CCWWGG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	1544
Bst2UI	CCWGG	1 cut(s)	1773
Bst4CI	ACNGT	3 cut(s)	1154, 1403, 1686
Bst6I	CTCTTC	2 cut(s)	1216, 1288
BstAUI	TGTACA	1 cut(s)	1188
BstBI	TTCGAA	1 cut(s)	819
BstC8I	GCNNGC	6 cut(s)	704, 804, 867, 1080, 1131, 1594
BstDEI	CTNAG	1 cut(s)	154
BstDSI	CCRYGG	2 cut(s)	159, 584
BstF5I	GGATG	8 cut(s)	402, 604, 999, 1427, 1443, 1528, 1726, 1753
BstFNI	CGCG	3 cut(s)	413, 586, 806
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	4 cut(s)	208, 413, 766, 889
BstMCI	CGRYCG	1 cut(s)	1034
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 458, 866
BstNI	CCWGG	1 cut(s)	1773
BstNSI	RCATGY	4 cut(s)	624, 778, 1133, 1189
BstSCI	CCNGG	5 cut(s)	131, 266, 1529, 1530, 1771
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	3 cut(s)	413, 586, 806
BstV1I	GCAGC	3 cut(s)	487, 811, 1376
BstV2I	GAAGAC	2 cut(s)	1200, 1373
BstX2I	RGATCY	1 cut(s)	1468
BstXI	CCANNNNNNTGG	1 cut(s)	1266
BstYI	RGATCY	1 cut(s)	1468
BsuRI	GGCC	2 cut(s)	374, 1634
BtgI	CCRYGG	2 cut(s)	159, 584
BtgZI	GCGATG	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	8 cut(s)	402, 604, 999, 1427, 1443, 1528, 1726, 1753
BtsI	GCAGTG	1 cut(s)	896
BtsIMutI	CAGTG	7 cut(s)	367, 651, 896, 957, 979, 1159, 1408
BveI	ACCTGC	2 cut(s)	697, 1506
Cac8I	GCNNGC	6 cut(s)	704, 804, 867, 1080, 1131, 1594
CciI	TCATGA	1 cut(s)	723
CfoI	GCGC	4 cut(s)	208, 413, 766, 889
Cfr13I	GGNCC	2 cut(s)	109, 840
Cfr42I	CCGCGG	1 cut(s)	587
Cfr9I	CCCGGG	1 cut(s)	1530
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	808, 1189, 1352
CviQI	GTAC	3 cut(s)	808, 1189, 1352
DdeI	CTNAG	1 cut(s)	154
DraI	TTTAAA	2 cut(s)	303, 1608
EaeI	YGGCCR	1 cut(s)	1632
Eam1104I	CTCTTC	2 cut(s)	1216, 1288
EarI	CTCTTC	2 cut(s)	1216, 1288
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	109, 840
Eco47III	AGCGCT	1 cut(s)	765
Eco57I	CTGAAG	1 cut(s)	951
Eco88I	CYCGRG	2 cut(s)	425, 1530
EcoO109I	RGGNCCY	1 cut(s)	840
EcoRI	GAATTC	2 cut(s)	640, 961
EcoRII	CCWGG	1 cut(s)	1771
EcoT14I	CCWWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	387
FaqI	GGGAC	1 cut(s)	1585
FauI	CCCGC	1 cut(s)	579
FbaI	TGATCA	3 cut(s)	720, 969, 1750
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	414, 501, 800, 1365
FokI	GGATG	8 cut(s)	409, 611, 1006, 1434, 1450, 1535, 1733, 1760
Fsp4HI	GCNGC	4 cut(s)	414, 501, 800, 1365
FspBI	CTAG	6 cut(s)	678, 923, 989, 1068, 1586, 1613
FspI	TGCGCA	1 cut(s)	888
GlaI	GCGC	4 cut(s)	207, 412, 765, 888
GluI	GCNGC	4 cut(s)	414, 501, 800, 1365
GsaI	CCCAGC	1 cut(s)	1704
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	2 cut(s)	374, 1634
HapII	CCGG	4 cut(s)	132, 267, 756, 1531
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	4 cut(s)	208, 413, 766, 889
Hin6I	GCGC	4 cut(s)	206, 411, 764, 887
HinP1I	GCGC	4 cut(s)	206, 411, 764, 887
HincII	GTYRAC	1 cut(s)	1414
HindII	GTYRAC	1 cut(s)	1414
HindIII	AAGCTT	1 cut(s)	1005
HinfI	GANTC	6 cut(s)	926, 947, 1091, 1232, 1310, 1598
HpaII	CCGG	4 cut(s)	132, 267, 756, 1531
HphI	GGTGA	4 cut(s)	160, 430, 550, 641
Hpy166II	GTNNAC	6 cut(s)	112, 151, 253, 772, 1112, 1414
Hpy188I	TCNGA	8 cut(s)	86, 639, 695, 931, 1050, 1473, 1555, 1648
Hpy188III	TCNNGA	8 cut(s)	313, 529, 607, 724, 1563, 1613, 1678, 1761
Hpy8I	GTNNAC	6 cut(s)	112, 151, 253, 772, 1112, 1414
Hpy99I	CGWCG	2 cut(s)	176, 224
HpyAV	CCTTC	5 cut(s)	815, 926, 1292, 1569, 1711
HpyCH4III	ACNGT	3 cut(s)	1154, 1403, 1686
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 458, 866
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	1 cut(s)	147
HspAI	GCGC	4 cut(s)	206, 411, 764, 887
Ksp22I	TGATCA	3 cut(s)	720, 969, 1750
KspI	CCGCGG	1 cut(s)	587
LmnI	GCTCC	4 cut(s)	87, 617, 1051, 1773
Lsp1109I	GCAGC	3 cut(s)	487, 811, 1376
LweI	GCATC	4 cut(s)	193, 736, 1326, 1711
MaeI	CTAG	6 cut(s)	678, 923, 989, 1068, 1586, 1613
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	6 cut(s)	349, 377, 646, 952, 1063, 1397
MboII	GAAGA	7 cut(s)	130, 527, 1200, 1233, 1305, 1355, 1373
MfeI	CAATTG	1 cut(s)	1790
MflI	RGATCY	1 cut(s)	1468
MlsI	TGGCCA	1 cut(s)	1634
MluCI	AATT	9 cut(s)	44, 640, 729, 961, 1134, 1428, 1535, 1649, 1790
MluNI	TGGCCA	1 cut(s)	1634
MlyI	GAGTC	1 cut(s)	1607
MmeI	TCCRAC	1 cut(s)	1500
Mox20I	TGGCCA	1 cut(s)	1634
Mph1103I	ATGCAT	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	1634
MseI	TTAA	5 cut(s)	302, 939, 1149, 1538, 1607
MslI	CAYNNNNRTG	3 cut(s)	1128, 1184, 1190
Msp20I	TGGCCA	1 cut(s)	1634
MspA1I	CMGCKG	2 cut(s)	461, 586
MspI	CCGG	4 cut(s)	132, 267, 756, 1531
MspR9I	CCNGG	5 cut(s)	133, 268, 1531, 1532, 1773
MunI	CAATTG	1 cut(s)	1790
Mva1269I	GAATGC	6 cut(s)	349, 408, 862, 889, 1032, 1276
MvaI	CCWGG	1 cut(s)	1773
MvnI	CGCG	3 cut(s)	413, 586, 806
MwoI	GCNNNNNNNGC	3 cut(s)	98, 458, 866
NciI	CCSGG	4 cut(s)	133, 268, 1531, 1532
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	5 cut(s)	377, 646, 952, 1063, 1397
NsbI	TGCGCA	1 cut(s)	888
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	4 cut(s)	624, 778, 1133, 1189
NspV	TTCGAA	1 cut(s)	819
PaeI	GCATGC	1 cut(s)	1133
PagI	TCATGA	1 cut(s)	723
PciI	ACATGT	2 cut(s)	774, 1185
PctI	GAATGC	6 cut(s)	349, 408, 862, 889, 1032, 1276
PfeI	GAWTC	5 cut(s)	926, 947, 1091, 1232, 1310
PkrI	GCNGC	4 cut(s)	415, 502, 801, 1366
Ple19I	CGATCG	1 cut(s)	1034
PleI	GAGTC	1 cut(s)	1606
PpsI	GAGTC	1 cut(s)	1606
PpuMI	RGGWCCY	1 cut(s)	840
PscI	ACATGT	2 cut(s)	774, 1185
PsiI	TTATAA	2 cut(s)	557, 1376
Psp5II	RGGWCCY	1 cut(s)	840
Psp6I	CCWGG	1 cut(s)	1771
PspFI	CCCAGC	1 cut(s)	1700
PspGI	CCWGG	1 cut(s)	1771
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	109, 840
PspPPI	RGGWCCY	1 cut(s)	840
PsuI	RGATCY	1 cut(s)	1468
PvuI	CGATCG	1 cut(s)	1034
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	3 cut(s)	809, 1190, 1353
RsaNI	GTAC	3 cut(s)	808, 1189, 1352
RseI	CAYNNNNRTG	3 cut(s)	1128, 1184, 1190
SacII	CCGCGG	1 cut(s)	587
SaqAI	TTAA	5 cut(s)	302, 939, 1149, 1538, 1607
SatI	GCNGC	4 cut(s)	414, 501, 800, 1365
Sau96I	GGNCC	2 cut(s)	109, 840
SchI	GAGTC	1 cut(s)	1607
ScrFI	CCNGG	5 cut(s)	133, 268, 1531, 1532, 1773
SfaNI	GCATC	4 cut(s)	193, 736, 1326, 1711
SfcI	CTRYAG	1 cut(s)	354
Sfr303I	CCGCGG	1 cut(s)	587
SfuI	TTCGAA	1 cut(s)	819
SgrBI	CCGCGG	1 cut(s)	587
SinI	GGWCC	2 cut(s)	109, 840
SmaI	CCCGGG	1 cut(s)	1532
SmiI	ATTTAAAT	1 cut(s)	1608
SmiMI	CAYNNNNRTG	3 cut(s)	1128, 1184, 1190
SmlI	CTYRAG	2 cut(s)	96, 209
SmoI	CTYRAG	2 cut(s)	96, 209
SpeI	ACTAGT	1 cut(s)	1067
SphI	GCATGC	1 cut(s)	1133
Sse9I	AATT	9 cut(s)	44, 640, 729, 961, 1134, 1428, 1535, 1649, 1790
SsiI	CCGC	6 cut(s)	25, 347, 413, 416, 584, 586
SspI	AATATT	1 cut(s)	1326
SspMI	CTAG	6 cut(s)	678, 923, 989, 1068, 1586, 1613
StyD4I	CCNGG	5 cut(s)	131, 266, 1529, 1530, 1771
StyI	CCWWGG	1 cut(s)	387
SwaI	ATTTAAAT	1 cut(s)	1608
TaaI	ACNGT	3 cut(s)	1154, 1403, 1686
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	5 cut(s)	219, 476, 819, 1034, 1341
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	9 cut(s)	44, 640, 729, 961, 1134, 1428, 1535, 1649, 1790
TatI	WGTACW	2 cut(s)	1188, 1351
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	5 cut(s)	926, 947, 1091, 1232, 1310
Tru1I	TTAA	5 cut(s)	302, 939, 1149, 1538, 1607
Tru9I	TTAA	5 cut(s)	302, 939, 1149, 1538, 1607
TscAI	CASTG	7 cut(s)	367, 651, 896, 957, 979, 1159, 1408
TseFI	GTSAC	5 cut(s)	377, 646, 952, 1063, 1397
TseI	GCWGC	3 cut(s)	500, 799, 1364
Tsp45I	GTSAC	5 cut(s)	377, 646, 952, 1063, 1397
TspMI	CCCGGG	1 cut(s)	1530
TspRI	CASTG	7 cut(s)	367, 651, 896, 957, 979, 1159, 1408
VpaK11BI	GGWCC	2 cut(s)	109, 840
XapI	RAATTY	4 cut(s)	44, 640, 961, 1428
XbaI	TCTAGA	1 cut(s)	1612
XceI	RCATGY	4 cut(s)	624, 778, 1133, 1189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmaI	CCCGGG	1 cut(s)	1530
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	6 cut(s)	678, 923, 989, 1068, 1586, 1613
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.