Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

8716504 .. 8717914

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAAATTCAGCTTGTGTTCATACCATCGCCTGGAATAGGTCATCTCAGGTCAACCGTTGAGTTAGCAAAGCGACTCGTCCGCAGCGATGACCGCCTTTGGATCACCGTAATCATCATCCCTTACCCTTCCATTAGCGACGACGACGTTGAAACCACCTATATAGCATCTCTCACGACCGCATCTCAAGATCGTCTCAACTACGAAGCCATCTCCGTCGCAAATCAACCAACCGACTATCAAGAGCCAACTCAAGTCTACATCGAGAAACAAAAGCCTCAAGTTAGAGATGTTGTCGCGAGAATCTTCCATTCAACAGGAGTTGACTCGCCGCGAGTAGCCGGATTCGTGGTGGACATGTTCTGTTCATCGATGATCGATGTAGTTAACGAATTTGGAGTTCCGTGTTATATGGTATACACATCAAACGCTACGTGTTTGGGAATCACACTTCATATTCAACGAATGTTCGACGAGAAGAAGTATGACGTAAGCGAGTTGGAAGACTCGGTCAACGAGTTGGAGTTTCCATTTTTGACTCGTCCTTACCCTGTGAAATGTCTTCCTGATTTCTTCACTTCCAAGGATTGGTTAGCTTTCTTTCTAGCTCAAGCTAGATGTTTTCGAAAGATGAAAGAAGATAAGCGCCTTTGCGATGGTGGAGGAGTTGGGATTGGCGGTTCAGATACGGAAGTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010294 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080045 GO:0080046 GO:0097305 GO:1900140 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

233

Amino Acids

26.36

Weight (kDa)

4.95

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	32, 588
AccI	GTMKAC	2 cut(s)	258, 417
AccII	CGCG	2 cut(s)	299, 334
AciI	CCGC	5 cut(s)	82, 94, 180, 332, 678
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	6, 392
AfiI	CCNNNNNNNGG	3 cut(s)	32, 38, 588
AflIII	ACRYGT	2 cut(s)	357, 434
AgsI	TTSAA	3 cut(s)	152, 315, 461
AjnI	CCWGG	1 cut(s)	31
AloI	GAACNNNNNNTCC	2 cut(s)	664, 696
AluBI	AGCT	4 cut(s)	13, 596, 608, 614
AluI	AGCT	4 cut(s)	13, 596, 608, 614
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	6, 392
AspLEI	GCGC	1 cut(s)	648
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	625
BaeI	ACNNNNGTAYC	1 cut(s)	678
BbsI	GAAGAC	2 cut(s)	510, 554
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	3 cut(s)	34, 218, 650
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	605, 615
BfoI	RGCGCY	1 cut(s)	649
BisI	GCNGC	2 cut(s)	85, 332
BlsI	GCNGC	2 cut(s)	86, 333
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	176, 191
BpiI	GAAGAC	2 cut(s)	510, 554
Bpu14I	TTCGAA	1 cut(s)	625
BpuEI	CTTGAG	4 cut(s)	171, 237, 264, 594
Bsa29I	ATCGAT	2 cut(s)	371, 378
BsaAI	YACGTR	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 38, 588
BseBI	CCWGG	1 cut(s)	33
BseCI	ATCGAT	2 cut(s)	371, 378
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	32, 38, 588
BseMII	CTCAG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	678
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	2 cut(s)	299, 334
Bsh1285I	CGRYCG	1 cut(s)	180
BshVI	ATCGAT	2 cut(s)	371, 378
BsiEI	CGRYCG	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	3 cut(s)	32, 38, 588
BsmAI	GTCTC	1 cut(s)	200
BsmBI	CGTCTC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	102, 190, 375
Bsp68I	TCGCGA	1 cut(s)	299
BspACI	CCGC	5 cut(s)	82, 94, 180, 332, 678
BspCNI	CTCAG	1 cut(s)	60
BspDI	ATCGAT	2 cut(s)	371, 378
BspFNI	CGCG	2 cut(s)	299, 334
BspPI	GGATC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	625
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	3 cut(s)	102, 190, 375
BssNAI	GTATAC	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	582
Bst1107I	GTATAC	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	58, 109
BstBAI	YACGTR	1 cut(s)	435
BstBI	TTCGAA	1 cut(s)	625
BstDEI	CTNAG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	2 cut(s)	299, 334
BstH2I	RGCGCY	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	3 cut(s)	105, 193, 378
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	3 cut(s)	102, 190, 375
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	31
BstUI	CGCG	2 cut(s)	299, 334
BstV1I	GCAGC	1 cut(s)	96
BstV2I	GAAGAC	2 cut(s)	510, 554
BstZ17I	GTATAC	1 cut(s)	418
Bsu15I	ATCGAT	2 cut(s)	371, 378
BsuTUI	ATCGAT	2 cut(s)	371, 378
BtgZI	GCGATG	3 cut(s)	12, 102, 669
BtsCI	GGATG	1 cut(s)	117
BtuMI	TCGCGA	1 cut(s)	299
CfoI	GCGC	1 cut(s)	648
ClaI	ATCGAT	2 cut(s)	371, 378
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	8 cut(s)	13, 209, 247, 277, 341, 596, 608, 614
CviKI_1	RGCY	8 cut(s)	13, 209, 247, 277, 341, 596, 608, 614
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	3 cut(s)	104, 192, 377
DpnII	GATC	3 cut(s)	102, 190, 375
Eco130I	CCWWGG	1 cut(s)	582
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	1 cut(s)	361
FaiI	YATR	9 cut(s)	23, 162, 164, 359, 411, 413, 418, 456, 486
FatI	CATG	1 cut(s)	357
FblI	GTMKAC	2 cut(s)	258, 417
Fnu4HI	GCNGC	2 cut(s)	85, 332
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	85, 332
FspBI	CTAG	2 cut(s)	605, 615
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	2 cut(s)	85, 332
HaeII	RGCGCY	1 cut(s)	649
HapII	CCGG	1 cut(s)	342
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HincII	GTYRAC	4 cut(s)	54, 325, 388, 514
HindII	GTYRAC	4 cut(s)	54, 325, 388, 514
HinfI	GANTC	7 cut(s)	75, 303, 326, 345, 444, 506, 538
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	7 cut(s)	54, 259, 325, 355, 388, 418, 514
Hpy188I	TCNGA	1 cut(s)	685
Hpy188III	TCNNGA	6 cut(s)	175, 188, 242, 265, 298, 566
Hpy8I	GTNNAC	7 cut(s)	54, 259, 325, 355, 388, 418, 514
Hpy99I	CGWCG	5 cut(s)	143, 146, 149, 221, 476
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	2 cut(s)	58, 109
HpyCH4IV	ACGT	3 cut(s)	147, 434, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	3 cut(s)	147, 434, 489
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	646
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	102, 190, 375
LpnPI	CCDG	7 cut(s)	18, 34, 45, 303, 355, 564, 579
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	2 cut(s)	176, 191
MaeI	CTAG	2 cut(s)	605, 615
MaeII	ACGT	3 cut(s)	147, 434, 489
MalI	GATC	3 cut(s)	104, 192, 377
MboI	GATC	3 cut(s)	102, 190, 375
MboII	GAAGA	6 cut(s)	298, 490, 515, 554, 565, 650
MluCI	AATT	2 cut(s)	6, 392
MlyI	GAGTC	4 cut(s)	69, 320, 500, 532
MmeI	TCCRAC	2 cut(s)	480, 501
MnlI	CCTC	2 cut(s)	288, 656
MseI	TTAA	1 cut(s)	387
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MvnI	CGCG	2 cut(s)	299, 334
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeII	GATC	3 cut(s)	102, 190, 375
NlaIII	CATG	1 cut(s)	361
NruI	TCGCGA	1 cut(s)	299
NspI	RCATGY	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	625
PciI	ACATGT	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	303, 345, 444
PflFI	GACNNNGTC	1 cut(s)	509
PflMI	CCANNNNNTGG	2 cut(s)	32, 588
PkrI	GCNGC	2 cut(s)	86, 333
PleI	GAGTC	4 cut(s)	69, 320, 500, 532
PpsI	GAGTC	4 cut(s)	69, 320, 500, 532
Ppu21I	YACGTR	1 cut(s)	435
PscI	ACATGT	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	509
RruI	TCGCGA	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	85, 332
Sau3AI	GATC	3 cut(s)	102, 190, 375
SchI	GAGTC	4 cut(s)	69, 320, 500, 532
ScrFI	CCNGG	1 cut(s)	33
SfaNI	GCATC	2 cut(s)	176, 191
SfuI	TTCGAA	1 cut(s)	625
SmlI	CTYRAG	4 cut(s)	186, 252, 279, 609
SmoI	CTYRAG	4 cut(s)	186, 252, 279, 609
Sse9I	AATT	2 cut(s)	6, 392
SsiI	CCGC	5 cut(s)	82, 94, 180, 332, 678
SspMI	CTAG	2 cut(s)	605, 615
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	58, 109
TaiI	ACGT	3 cut(s)	150, 437, 492
TaqI	TCGA	5 cut(s)	264, 371, 378, 471, 625
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	2 cut(s)	6, 392
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	3 cut(s)	303, 345, 444
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	5 cut(s)	10, 17, 357, 443, 647
TspGWI	ACGGA	2 cut(s)	205, 393
Tth111I	GACNNNGTC	1 cut(s)	509
Van91I	CCANNNNNTGG	2 cut(s)	32, 588
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	6, 392
XceI	RCATGY	1 cut(s)	361
XmiI	GTMKAC	2 cut(s)	258, 417
XspI	CTAG	2 cut(s)	605, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.