Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

16398279 .. 16399739

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGAAGAAAGCTGCAGAGCTGGTGTTCATCCCCTGCGCCGGTGTTGGCCACGTCATATCAACGGTAGAGATCGCAAAGCTTCTCGTATCTCGAGAGGACCACCTCTTCATCACCGTCCTCGTCATGAAGGCCCCCTTCGACTCCAAAGGCAACGATGCCTGTACAGAGTACTGCATCACACAAGCCTCCGATCGCATCAAGTTCATCAATCTCCCACAGCCCGACGTCGACTTCCTAAACATGACCCGCAGCAACTTCCGCAAATCGTTCTTTGAAAGCCACAAACCCTACGTCAGAGATGCCGTCACCAAACTCCTCGCCGGCTCGTCCGAGTCATCAACCCCTGGACTCGCCGGGTTCGTAATCGACATGTTCTGCACCACCATGATCGACGTGGCCAACGAGTTCGAGGTTCCTACCTACATCTTCTTCACCTCCAACGCTGGCTTTCTGGGGCTCGTGTTCCACCTCCAGATGATCCACGACGAGCATGACGTGGACATCGCTGACTTGAAAGACTCGGATTCTGAGTTGGTCCTCCCGAGTTTTGTTAATCCGGTACCTATCAAAGCCCTGCCGAGTATACTTTTGGAGAAAGAGGAGGCAATCCCGTTCTTAAACTACGCAAGAAGGTTCAGAGAGACCAAGGGTATTTTGATAAATACCTTCTCAGATCTGGAACCACATGCCCTTCGTTCTCTTGATTCTTATGGGAAGATCCCGCCGGTATATCCGGTGGGACCACTTCTAAAAGGGAAGAGTGACGATAATAACCCTAGGGGATCAGATCAGGCCGGCCGAGAGATCATGAAATGGCTTGATGATCAGCTTCCATCGTCGGTCGTGTTCTTGTGCTTTGGGAGCATGGGAAGTTTTGGTGAGGATCAAGTGAAAGAGATTGCCTGCGCGCTGGAGCAGAGTGGCCACCGGTTCTTGTGGTCCATACGTTGCCCCCCACCAAAGGGAAAGATTACTCACCCCAGCGACTATGCTGATCCCGCGGCCATCTTACCCGAGGGGTTTCTCGAACGGACGGCTAGGATCGGAAAGATCATAGGGTGGGCCCCACAAGTGGCGGTGTTGGCCCACCCGGCCGTGGGAGGTTTTGTATCTCATTGCGGGTGGAATTCGATACTGGAGAGTCTTTGGTTTGGTGTGCCTGTTGCTACGTGGCCCATGTACTCGGAGCAACAAATGAATGCATTTGAAATGGTGAAGGAATTAGAATTGGCGGTGAAGATTAGTGTAGATTACGGGTGGGACTTTTATAACACCAGTCAGGAGGGGCAAATGGTTTTGAGTGCCCAAGAGATAGAAAGAGGAATTAGGGAGGTGATGGAGCATGATACTGACATAAGGAAGAAGGTGAACGAGATGAGTGAAATGTGCAAGAAATCCCTGATGGATGGCGGTTCTTCCTACTCTTCATTGGGAAGTTTTATTGATCAGATATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

486

Amino Acids

54.16

Weight (kDa)

5.11

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	269 - 406	1e-23	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1269
AatII	GACGTC	1 cut(s)	228
Acc65I	GGTACC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	559
AccI	GTMKAC	2 cut(s)	228, 583
AccII	CGCG	2 cut(s)	908, 1001
AciI	CCGC	9 cut(s)	247, 259, 722, 999, 1001, 1076, 1119, 1232, 1410
AclWI	GGATC	6 cut(s)	472, 712, 790, 891, 989, 1049
AcoI	YGGCCR	6 cut(s)	46, 396, 796, 922, 1002, 1092
AcsI	RAATTY	1 cut(s)	1126
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	4 cut(s)	163, 170, 561, 1181
AfiI	CCNNNNNNNGG	6 cut(s)	38, 961, 962, 1072, 1096, 1097
AflIII	ACRYGT	1 cut(s)	369
AgeI	ACCGGT	1 cut(s)	927
AgsI	TTSAA	3 cut(s)	275, 514, 1208
AjiI	CACGTC	3 cut(s)	52, 394, 496
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	4 cut(s)	11, 19, 79, 829
AluI	AGCT	4 cut(s)	11, 19, 79, 829
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	6 cut(s)	472, 712, 790, 891, 989, 1049
Ama87I	CYCGRG	3 cut(s)	90, 541, 1013
ApaI	GGGCCC	1 cut(s)	1066
ApeKI	GCWGC	2 cut(s)	11, 249
ApoI	RAATTY	1 cut(s)	1126
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
AsiGI	ACCGGT	1 cut(s)	927
Asp718I	GGTACC	1 cut(s)	559
AspA2I	CCTAGG	1 cut(s)	776
AspLEI	GCGC	3 cut(s)	38, 908, 910
AspS9I	GGNCC	9 cut(s)	97, 130, 535, 740, 939, 1062, 1063, 1084, 1173
AsuC2I	CCSGG	2 cut(s)	355, 1091
AsuHPI	GGTGA	9 cut(s)	103, 298, 424, 890, 968, 1225, 1246, 1345, 1378
AvaI	CYCGRG	3 cut(s)	90, 541, 1013
AvaII	GGWCC	4 cut(s)	97, 535, 740, 939
AvrII	CCTAGG	1 cut(s)	776
BaeGI	GKGCMC	2 cut(s)	1066, 1306
BalI	TGGCCA	3 cut(s)	48, 398, 924
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	2 cut(s)	459, 1066
BauI	CACGAG	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	5 cut(s)	841, 1013, 1330, 1396, 1400
BceAI	ACGGC	3 cut(s)	287, 1050, 1079
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	2 cut(s)	823, 1444
BcnI	CCSGG	2 cut(s)	355, 1091
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	2 cut(s)	777, 1038
BfmI	CTRYAG	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	1091
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	3 cut(s)	12, 250, 1002
BlnI	CCTAGG	1 cut(s)	776
BlsI	GCNGC	3 cut(s)	13, 251, 1003
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	3 cut(s)	345, 355, 1091
Bme18I	GGWCC	4 cut(s)	97, 535, 740, 939
BmeT110I	CYCGRG	3 cut(s)	90, 541, 1013
BmgBI	CACGTC	3 cut(s)	52, 394, 496
BmgT120I	GGNCC	9 cut(s)	97, 130, 535, 740, 939, 1062, 1063, 1084, 1173
BmiI	GGNNCC	7 cut(s)	132, 414, 561, 681, 741, 1064, 1065
BmrFI	CCNGG	3 cut(s)	345, 355, 1091
BmsI	GCATC	4 cut(s)	145, 183, 204, 289
BpmI	CTGGAG	3 cut(s)	455, 932, 1157
BpuMI	CCSGG	2 cut(s)	355, 1091
BsaAI	YACGTR	1 cut(s)	1170
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	635
BsaJI	CCNNGG	6 cut(s)	343, 645, 776, 999, 1014, 1095
BsaWI	WCCGGW	3 cut(s)	556, 733, 927
BsaXI	ACNNNNNCTCC	2 cut(s)	1092, 1122
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 961, 962, 1072, 1096, 1097
Bse118I	RCCGGY	5 cut(s)	38, 320, 724, 794, 927
Bse1I	ACTGG	2 cut(s)	1140, 1275
Bse3DI	GCAATG	1 cut(s)	1114
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	6 cut(s)	343, 645, 776, 999, 1014, 1095
BseGI	GGATG	2 cut(s)	27, 1411
BseLI	CCNNNNNNNGG	6 cut(s)	38, 961, 962, 1072, 1096, 1097
BseMI	GCAATG	1 cut(s)	1114
BseMII	CTCAG	2 cut(s)	519, 684
BseNI	ACTGG	2 cut(s)	1140, 1275
BsePI	GCGCGC	1 cut(s)	906
BseRI	GAGGAG	2 cut(s)	305, 614
BseSI	GKGCMC	2 cut(s)	1066, 1306
BseX3I	CGGCCG	2 cut(s)	796, 1092
BseXI	GCAGC	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	980
BsgI	GTGCAG	1 cut(s)	361
Bsh1236I	CGCG	2 cut(s)	908, 1001
Bsh1285I	CGRYCG	4 cut(s)	193, 799, 843, 1095
BshNI	GGYRCC	1 cut(s)	559
BshTI	ACCGGT	1 cut(s)	927
BsiEI	CGRYCG	4 cut(s)	193, 799, 843, 1095
BsiHKCI	CYCGRG	3 cut(s)	90, 541, 1013
BsiSI	CCGG	9 cut(s)	39, 321, 354, 557, 725, 734, 795, 928, 1091
BslFI	GGGAC	2 cut(s)	753, 1274
BslI	CCNNNNNNNGG	6 cut(s)	38, 961, 962, 1072, 1096, 1097
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	2 cut(s)	753, 1274
BsmI	GAATGC	1 cut(s)	1204
Bso31I	GGTCTC	1 cut(s)	635
BsoBI	CYCGRG	3 cut(s)	90, 541, 1013
Bsp120I	GGGCCC	1 cut(s)	1062
Bsp1286I	GDGCHC	3 cut(s)	459, 1066, 1306
Bsp1407I	TGTACA	1 cut(s)	161
BspACI	CCGC	9 cut(s)	247, 259, 722, 999, 1001, 1076, 1119, 1232, 1410
BspCNI	CTCAG	2 cut(s)	520, 683
BspFNI	CGCG	2 cut(s)	908, 1001
BspHI	TCATGA	2 cut(s)	123, 807
BspLI	GGNNCC	7 cut(s)	132, 414, 561, 681, 741, 1064, 1065
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	6 cut(s)	472, 712, 790, 891, 989, 1049
BspT107I	GGYRCC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	1114
BsrFI	RCCGGY	5 cut(s)	38, 320, 724, 794, 927
BsrGI	TGTACA	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	1140, 1275
BssAI	RCCGGY	5 cut(s)	38, 320, 724, 794, 927
BssECI	CCNNGG	6 cut(s)	343, 645, 776, 999, 1014, 1095
BssHII	GCGCGC	1 cut(s)	906
BssNAI	GTATAC	1 cut(s)	584
BssNI	GRCGYC	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	645, 776
Bst1107I	GTATAC	1 cut(s)	584
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	64, 115
Bst6I	CTCTTC	3 cut(s)	110, 752, 1429
BstACI	GRCGYC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	1170
BstC8I	GCNNGC	5 cut(s)	322, 445, 796, 904, 908
BstDEI	CTNAG	2 cut(s)	528, 670
BstDSI	CCRYGG	2 cut(s)	999, 1095
BstF5I	GGATG	2 cut(s)	27, 1411
BstFNI	CGCG	2 cut(s)	908, 1001
BstHHI	GCGC	3 cut(s)	38, 908, 910
BstMAI	GTCTC	1 cut(s)	635
BstMCI	CGRYCG	4 cut(s)	193, 799, 843, 1095
BstMWI	GCNNNNNNNGC	5 cut(s)	258, 861, 998, 1082, 1091
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	2 cut(s)	373, 689
BstSCI	CCNGG	3 cut(s)	343, 353, 1089
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	2 cut(s)	1066, 1306
BstUI	CGCG	2 cut(s)	908, 1001
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	2 cut(s)	673, 717
BstYI	RGATCY	2 cut(s)	673, 717
BstZ17I	GTATAC	1 cut(s)	584
BstZI	CGGCCG	2 cut(s)	796, 1092
BtgI	CCRYGG	2 cut(s)	999, 1095
BtgZI	GCGATG	1 cut(s)	487
BtrI	CACGTC	3 cut(s)	52, 394, 496
BtsCI	GGATG	2 cut(s)	27, 1411
Cac8I	GCNNGC	5 cut(s)	322, 445, 796, 904, 908
CciI	TCATGA	2 cut(s)	123, 807
CfoI	GCGC	3 cut(s)	38, 908, 910
Cfr10I	RCCGGY	5 cut(s)	38, 320, 724, 794, 927
Cfr13I	GGNCC	9 cut(s)	97, 130, 535, 740, 939, 1062, 1063, 1084, 1173
Cfr42I	CCGCGG	1 cut(s)	1002
Csp6I	GTAC	4 cut(s)	162, 169, 560, 1180
CspAI	ACCGGT	1 cut(s)	927
CviQI	GTAC	4 cut(s)	162, 169, 560, 1180
DdeI	CTNAG	2 cut(s)	528, 670
EaeI	YGGCCR	6 cut(s)	46, 396, 796, 922, 1002, 1092
EagI	CGGCCG	2 cut(s)	796, 1092
Eam1104I	CTCTTC	3 cut(s)	110, 752, 1429
EarI	CTCTTC	3 cut(s)	110, 752, 1429
EclXI	CGGCCG	2 cut(s)	796, 1092
Eco130I	CCWWGG	2 cut(s)	645, 776
Eco24I	GRGCYC	2 cut(s)	459, 1066
Eco31I	GGTCTC	1 cut(s)	635
Eco47I	GGWCC	4 cut(s)	97, 535, 740, 939
Eco52I	CGGCCG	2 cut(s)	796, 1092
Eco88I	CYCGRG	3 cut(s)	90, 541, 1013
EcoO109I	RGGNCCY	2 cut(s)	130, 1063
EcoRI	GAATTC	1 cut(s)	1126
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	645, 776
EcoT22I	ATGCAT	1 cut(s)	1204
EcoT38I	GRGCYC	2 cut(s)	459, 1066
ErhI	CCWWGG	2 cut(s)	645, 776
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	2 cut(s)	753, 1274
FauI	CCCGC	4 cut(s)	254, 729, 1006, 1112
FbaI	TGATCA	2 cut(s)	823, 1444
FblI	GTMKAC	2 cut(s)	228, 583
Fnu4HI	GCNGC	3 cut(s)	12, 250, 1002
FokI	GGATG	2 cut(s)	14, 1418
FriOI	GRGCYC	2 cut(s)	459, 1066
FseI	GGCCGGCC	1 cut(s)	798
Fsp4HI	GCNGC	3 cut(s)	12, 250, 1002
FspBI	CTAG	2 cut(s)	777, 1038
GlaI	GCGC	3 cut(s)	37, 907, 909
GluI	GCNGC	3 cut(s)	12, 250, 1002
GsaI	CCCAGC	1 cut(s)	984
GsuI	CTGGAG	3 cut(s)	455, 932, 1157
HapII	CCGG	9 cut(s)	39, 321, 354, 557, 725, 734, 795, 928, 1091
HhaI	GCGC	3 cut(s)	38, 908, 910
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	3 cut(s)	36, 906, 908
HinP1I	GCGC	3 cut(s)	36, 906, 908
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	7 cut(s)	140, 332, 348, 518, 524, 704, 1141
HpaII	CCGG	9 cut(s)	39, 321, 354, 557, 725, 734, 795, 928, 1091
HphI	GGTGA	9 cut(s)	103, 298, 424, 890, 968, 1225, 1246, 1345, 1378
Hpy166II	GTNNAC	4 cut(s)	229, 499, 584, 1369
Hpy8I	GTNNAC	4 cut(s)	229, 499, 584, 1369
Hpy99I	CGWCG	5 cut(s)	227, 230, 395, 488, 841
HpyAV	CCTTC	7 cut(s)	121, 145, 624, 676, 701, 1210, 1357
HpyCH4III	ACNGT	2 cut(s)	64, 115
HpyCH4IV	ACGT	7 cut(s)	51, 225, 291, 393, 495, 946, 1169
HpyCH4V	TGCA	5 cut(s)	14, 174, 378, 1202, 1389
HpyF10VI	GCNNNNNNNGC	5 cut(s)	258, 861, 998, 1082, 1091
HpyF3I	CTNAG	2 cut(s)	528, 670
HpySE526I	ACGT	7 cut(s)	51, 225, 291, 393, 495, 946, 1169
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	3 cut(s)	36, 906, 908
KpnI	GGTACC	1 cut(s)	563
KroI	GCCGGC	2 cut(s)	320, 794
KroNI	GCCGGC	2 cut(s)	322, 796
Ksp22I	TGATCA	2 cut(s)	823, 1444
KspI	CCGCGG	1 cut(s)	1002
LmnI	GCTCC	4 cut(s)	861, 913, 1186, 1339
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	4 cut(s)	145, 183, 204, 289
MaeI	CTAG	2 cut(s)	777, 1038
MaeII	ACGT	7 cut(s)	51, 225, 291, 393, 495, 946, 1169
MaeIII	GTNAC	2 cut(s)	304, 761
MflI	RGATCY	2 cut(s)	673, 717
MhlI	GDGCHC	3 cut(s)	459, 1066, 1306
MlsI	TGGCCA	3 cut(s)	48, 398, 924
MluCI	AATT	4 cut(s)	1126, 1220, 1226, 1323
MluNI	TGGCCA	3 cut(s)	48, 398, 924
MlyI	GAGTC	5 cut(s)	134, 341, 342, 512, 1150
MmeI	TCCRAC	1 cut(s)	462
Mox20I	TGGCCA	3 cut(s)	48, 398, 924
Mph1103I	ATGCAT	1 cut(s)	1204
MroNI	GCCGGC	2 cut(s)	320, 794
MscI	TGGCCA	3 cut(s)	48, 398, 924
MseI	TTAA	2 cut(s)	552, 617
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	3 cut(s)	48, 398, 924
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	9 cut(s)	39, 321, 354, 557, 725, 734, 795, 928, 1091
MspR9I	CCNGG	3 cut(s)	345, 355, 1091
Mva1269I	GAATGC	1 cut(s)	1204
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	2 cut(s)	908, 1001
MwoI	GCNNNNNNNGC	5 cut(s)	258, 861, 998, 1082, 1091
NaeI	GCCGGC	2 cut(s)	322, 796
NciI	CCSGG	2 cut(s)	355, 1091
NgoMIV	GCCGGC	2 cut(s)	320, 794
NlaIV	GGNNCC	7 cut(s)	132, 414, 561, 681, 741, 1064, 1065
NmeAIII	GCCGAG	2 cut(s)	603, 824
NmuCI	GTSAC	2 cut(s)	304, 761
NsiI	ATGCAT	1 cut(s)	1204
NspI	RCATGY	2 cut(s)	373, 689
PaeR7I	CTCGAG	1 cut(s)	90
PagI	TCATGA	2 cut(s)	123, 807
PauI	GCGCGC	1 cut(s)	906
PciI	ACATGT	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	3 cut(s)	357, 399, 492
PctI	GAATGC	1 cut(s)	1204
PdiI	GCCGGC	2 cut(s)	322, 796
PfeI	GAWTC	2 cut(s)	524, 704
PinAI	ACCGGT	1 cut(s)	927
PkrI	GCNGC	3 cut(s)	13, 251, 1003
Ple19I	CGATCG	1 cut(s)	193
PleI	GAGTC	5 cut(s)	134, 340, 342, 512, 1149
PpsI	GAGTC	5 cut(s)	134, 340, 342, 512, 1149
Ppu21I	YACGTR	1 cut(s)	1170
PscI	ACATGT	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	1269
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	980
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	7 cut(s)	132, 414, 561, 681, 741, 1064, 1065
PspOMI	GGGCCC	1 cut(s)	1062
PspPI	GGNCC	9 cut(s)	97, 130, 535, 740, 939, 1062, 1063, 1084, 1173
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	673, 717
PteI	GCGCGC	1 cut(s)	906
PvuI	CGATCG	1 cut(s)	193
RigI	GGCCGGCC	1 cut(s)	798
RsaI	GTAC	4 cut(s)	163, 170, 561, 1181
RsaNI	GTAC	4 cut(s)	162, 169, 560, 1180
RseI	CAYNNNNRTG	1 cut(s)	383
SacII	CCGCGG	1 cut(s)	1002
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	552, 617
SatI	GCNGC	3 cut(s)	12, 250, 1002
Sau96I	GGNCC	9 cut(s)	97, 130, 535, 740, 939, 1062, 1063, 1084, 1173
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	5 cut(s)	134, 341, 342, 512, 1150
ScrFI	CCNGG	3 cut(s)	345, 355, 1091
SduI	GDGCHC	3 cut(s)	459, 1066, 1306
SfaNI	GCATC	4 cut(s)	145, 183, 204, 289
SfcI	CTRYAG	1 cut(s)	12
SfiI	GGCCNNNNNGGCC	1 cut(s)	1091
Sfr274I	CTCGAG	1 cut(s)	90
Sfr303I	CCGCGG	1 cut(s)	1002
SgrAI	CRCCGGYG	1 cut(s)	38
SgrBI	CCGCGG	1 cut(s)	1002
SinI	GGWCC	4 cut(s)	97, 535, 740, 939
SlaI	CTCGAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	4 cut(s)	1126, 1220, 1226, 1323
SsiI	CCGC	9 cut(s)	247, 259, 722, 999, 1001, 1076, 1119, 1232, 1410
SspMI	CTAG	2 cut(s)	777, 1038
StyD4I	CCNGG	3 cut(s)	343, 353, 1089
StyI	CCWWGG	2 cut(s)	645, 776
TaaI	ACNGT	2 cut(s)	64, 115
TaiI	ACGT	7 cut(s)	54, 228, 294, 396, 498, 949, 1172
TaqI	TCGA	8 cut(s)	91, 138, 228, 366, 390, 408, 1026, 1130
TaqII	GACCGA	1 cut(s)	829
TasI	AATT	4 cut(s)	1126, 1220, 1226, 1323
TatI	WGTACW	3 cut(s)	161, 168, 1179
TauI	GCSGC	1 cut(s)	1004
TfiI	GAWTC	2 cut(s)	524, 704
Tru1I	TTAA	2 cut(s)	552, 617
Tru9I	TTAA	2 cut(s)	552, 617
TseFI	GTSAC	2 cut(s)	304, 761
TseI	GCWGC	2 cut(s)	11, 249
Tsp45I	GTSAC	2 cut(s)	304, 761
TspDTI	ATGAA	8 cut(s)	16, 17, 97, 140, 193, 824, 1211, 1416
TspGWI	ACGGA	1 cut(s)	1045
VpaK11BI	GGWCC	4 cut(s)	97, 535, 740, 939
XapI	RAATTY	1 cut(s)	1126
XceI	RCATGY	2 cut(s)	373, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	90
XmaJI	CCTAGG	1 cut(s)	776
XmiI	GTMKAC	2 cut(s)	228, 583
XspI	CTAG	2 cut(s)	777, 1038
ZraI	GACGTC	1 cut(s)	226
ZrmI	AGTACT	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.