RLG00000020688

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
67642155 .. 67642590
436 bp
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UTR
Exon/CDS
Intron
RLM00000020688

Sequence Viewer

Length: 354 bp
ATGACCACACCAGAGTCTTGCTCAAAGGGTTCCTCGATCGAACAGTTGGGATTAGAAAGACTTGAGAGTCTTTTGCACGGTGTGTCGGTTGCCACATGGCCATTGTACGCGGAGCAACAGCTTAACGCATTTCAGTTGGTGAAGAAATTGGAATTGGTGGTGGAAATTGATTTGAGCTACCGGAGCGATAGTCCAGTTTTTGTGAGCGTGAAGGAGATAGAGAGAGGTATAAGAGGGGTAATGGAACTTAACAGTGATATAAGAAAGAGAGCGAAAGAAATGAGTGAGAAGGGCAAGAAAGCTTTAATGGATGGTGGGTCGTCATACCCTTCCTTGGGACATTTTATTGATTAG

Protein Analysis

118

Amino Acids

13.02

Weight (kDa)

5.73

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AccII CGCG 1 cut(s) 110
AciI CCGC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 98
AdeI CACNNNGTG 1 cut(s) 82
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 334, 335
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 3 cut(s) 121, 177, 302
AluI AGCT 3 cut(s) 121, 177, 302
AoxI GGCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 151
BalI TGGCCA 1 cut(s) 100
BccI CCATC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 31
BplI GAGNNNNNCTC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 335
Bse1I ACTGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 334, 335
BseNI ACTGG 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 334, 335
BsnI GGCC 1 cut(s) 100
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 100
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 3 cut(s) 45, 80, 254
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstUI CGCG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 259
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 96
CviJI RGCY 4 cut(s) 100, 121, 177, 302
CviKI_1 RGCY 4 cut(s) 100, 121, 177, 302
CviQI GTAC 1 cut(s) 106
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DraIII CACNNNGTG 1 cut(s) 82
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 99
FaiI YATR 4 cut(s) 97, 230, 260, 325
FatI CATG 1 cut(s) 95
FokI GGATG 1 cut(s) 323
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 181
Hin1II CATG 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 2 cut(s) 14, 67
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 205, 283, 339
HpyCH4III ACNGT 3 cut(s) 45, 80, 254
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 99
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 112, 183
LpnPI CCDG 3 cut(s) 24, 194, 207
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 154
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 3 cut(s) 146, 152, 165
MluNI TGGCCA 1 cut(s) 100
MlyI GAGTC 2 cut(s) 23, 76
MnlI CCTC 3 cut(s) 43, 218, 227
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
MseI TTAA 3 cut(s) 123, 249, 305
Msp20I TGGCCA 1 cut(s) 100
MspI CCGG 1 cut(s) 181
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 31
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 2 cut(s) 22, 75
PpsI GAGTC 2 cut(s) 22, 75
PspN4I GGNNCC 1 cut(s) 31
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 3 cut(s) 123, 249, 305
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 2 cut(s) 23, 76
SetI ASST 4 cut(s) 123, 179, 229, 304
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 3 cut(s) 146, 152, 165
SsiI CCGC 1 cut(s) 110
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 3 cut(s) 45, 80, 254
TaqI TCGA 2 cut(s) 35, 39
TasI AATT 3 cut(s) 146, 152, 165
Tru1I TTAA 3 cut(s) 123, 249, 305
Tru9I TTAA 3 cut(s) 123, 249, 305
TscAI CASTG 1 cut(s) 259
TspRI CASTG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.