Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8340327.1

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

494 .. 1005

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8340327.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 512 bp

atgaagcaagcggcagagctagtgtttatcccatccccaggcattggccacctcgtggcgacggtggaggtcgcaaagctcctcctgtctcgagatgatcaactcttcatcaccgtcctcatcataaagttcccgttcagctcagacggcactgatgcctacgttgagtccttcgcggactcttccatatcaaatcggatcaagttcatcaacctcccacagcagaatatggagacacaaggtaatagcgccatcaaccttttgaacttcattgacaatcatcaaaccaacgttaaagatgttgtcgccaaactcatcgagtccgagactgagactcgactcaccgggtttgtcatcgacatgttttgtacctctatgatcgaagtagccaacgaattaggggttcctacctacatgtttttcacgtccagcgcctccatgctaggggtcatgttacaccttcaagcacttcgtgatgatcacaacaaggactgcatcgagttcaaggactc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

171

Amino Acids

19.03

Weight (kDa)

4.67

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	44, 55
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	11, 176
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	46
AdeI	CACNNNGTG	2 cut(s)	55, 473
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	4 cut(s)	38, 44, 55, 444
AflIII	ACRYGT	2 cut(s)	360, 414
AgsI	TTSAA	3 cut(s)	265, 464, 505
AjiI	CACGTC	1 cut(s)	426
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	19, 79, 141
AluI	AGCT	3 cut(s)	19, 79, 141
Alw26I	GTCTC	4 cut(s)	93, 227, 320, 326
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	46
AspLEI	GCGC	2 cut(s)	251, 434
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	103, 334
AvaI	CYCGRG	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	48
BauI	CACGAG	1 cut(s)	53
BccI	CCATC	2 cut(s)	40, 260
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	2 cut(s)	97, 478
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	4 cut(s)	93, 227, 320, 326
BfaI	CTAG	2 cut(s)	20, 443
BfoI	RGCGCY	2 cut(s)	252, 435
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	39, 346
BmeT110I	CYCGRG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	39, 346
BmsI	GCATC	2 cut(s)	145, 504
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 44, 55, 444
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	4 cut(s)	38, 44, 55, 444
BseMII	CTCAG	2 cut(s)	156, 321
BseRI	GAGGAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	4 cut(s)	38, 44, 55, 444
BsmAI	GTCTC	4 cut(s)	93, 227, 320, 326
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	97, 198, 378, 478
BspACI	CCGC	2 cut(s)	11, 176
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	155, 322
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	4 cut(s)	97, 198, 378, 478
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	64, 115
Bst6I	CTCTTC	2 cut(s)	110, 187
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	142, 330
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	2 cut(s)	252, 435
BstHHI	GCGC	2 cut(s)	251, 434
BstKTI	GATC	4 cut(s)	100, 201, 381, 481
BstMAI	GTCTC	4 cut(s)	93, 227, 320, 326
BstMBI	GATC	4 cut(s)	97, 198, 378, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	2 cut(s)	364, 418
BstSCI	CCNGG	2 cut(s)	37, 344
BstUI	CGCG	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	2 cut(s)	251, 434
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	4 cut(s)	361, 415, 439, 451
CviJI	RGCY	5 cut(s)	19, 48, 79, 141, 389
CviKI_1	RGCY	5 cut(s)	19, 48, 79, 141, 389
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	2 cut(s)	142, 330
DpnI	GATC	4 cut(s)	99, 200, 380, 480
DpnII	GATC	4 cut(s)	97, 198, 378, 478
DraIII	CACNNNGTG	2 cut(s)	55, 473
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	110, 187
EarI	CTCTTC	2 cut(s)	110, 187
Eco88I	CYCGRG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	4 cut(s)	364, 418, 442, 454
FaiI	YATR	8 cut(s)	125, 188, 230, 362, 377, 416, 440, 452
FatI	CATG	4 cut(s)	360, 414, 438, 450
FbaI	TGATCA	2 cut(s)	97, 478
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	20, 443
GlaI	GCGC	2 cut(s)	250, 433
GluI	GCNGC	1 cut(s)	12
HaeII	RGCGCY	2 cut(s)	252, 435
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	2 cut(s)	251, 434
Hin1II	CATG	4 cut(s)	364, 418, 442, 454
Hin6I	GCGC	2 cut(s)	249, 432
HinP1I	GCGC	2 cut(s)	249, 432
HinfI	GANTC	6 cut(s)	167, 179, 320, 334, 339, 509
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	103, 334
Hpy188I	TCNGA	3 cut(s)	145, 198, 325
Hpy188III	TCNNGA	3 cut(s)	90, 92, 473
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	181, 470
HpyCH4III	ACNGT	2 cut(s)	64, 115
HpyCH4IV	ACGT	3 cut(s)	162, 291, 425
HpyCH4V	TGCA	1 cut(s)	495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	2 cut(s)	142, 330
HpySE526I	ACGT	3 cut(s)	162, 291, 425
Hsp92II	CATG	4 cut(s)	364, 418, 442, 454
HspAI	GCGC	2 cut(s)	249, 432
Ksp22I	TGATCA	2 cut(s)	97, 478
Kzo9I	GATC	4 cut(s)	97, 198, 378, 478
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	5 cut(s)	24, 51, 98, 358, 442
LweI	GCATC	2 cut(s)	145, 504
MaeI	CTAG	2 cut(s)	20, 443
MaeII	ACGT	3 cut(s)	162, 291, 425
MaeIII	GTNAC	1 cut(s)	453
MalI	GATC	4 cut(s)	99, 200, 380, 480
MboI	GATC	4 cut(s)	97, 198, 378, 478
MboII	GAAGA	2 cut(s)	97, 174
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	1 cut(s)	395
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	6 cut(s)	173, 176, 328, 329, 333, 503
MnlI	CCTC	7 cut(s)	61, 62, 92, 128, 224, 382, 445
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	48
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	39, 346
MvaI	CCWGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	4 cut(s)	97, 198, 378, 478
NlaIII	CATG	4 cut(s)	364, 418, 442, 454
NlaIV	GGNNCC	1 cut(s)	405
NspI	RCATGY	2 cut(s)	364, 418
PaeR7I	CTCGAG	1 cut(s)	90
PciI	ACATGT	2 cut(s)	360, 414
PflMI	CCANNNNNTGG	2 cut(s)	44, 55
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	6 cut(s)	173, 175, 328, 328, 333, 503
PpsI	GAGTC	6 cut(s)	173, 175, 328, 328, 333, 503
PscI	ACATGT	2 cut(s)	360, 414
Psp1406I	AACGTT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	405
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	97, 198, 378, 478
SchI	GAGTC	6 cut(s)	173, 176, 328, 329, 333, 503
ScrFI	CCNGG	2 cut(s)	39, 346
SfaNI	GCATC	2 cut(s)	145, 504
Sfr274I	CTCGAG	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	2 cut(s)	11, 176
SspMI	CTAG	2 cut(s)	20, 443
StyD4I	CCNGG	2 cut(s)	37, 344
TaaI	ACNGT	2 cut(s)	64, 115
TaiI	ACGT	3 cut(s)	165, 294, 428
TaqI	TCGA	6 cut(s)	91, 318, 337, 357, 381, 498
TasI	AATT	1 cut(s)	395
TauI	GCSGC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	4 cut(s)	17, 97, 196, 259
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	2 cut(s)	44, 55
XceI	RCATGY	2 cut(s)	364, 418
XhoI	CTCGAG	1 cut(s)	90
XspI	CTAG	2 cut(s)	20, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.