Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

37635811 .. 37637626

Gene Structure 1816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGAAGAAAGCTTCAGAGCTGATCTTCATCCCAATCCCAGGGATTGGCCACATCATCTCAACAGTTGAGATCGCAAAGCTCCTCCTCTCCCGAGATGACAACCTCTTCATTACAATCCTCATCATGAAGTTCCCCTTCACCGCAGACGGCAGCGACGCCTACATCAAGTCCTTGGCAGACCCGTCGTTGAAGACGCAGCGCATCAGTTTCGCCAACCTCCCACAAGAACAATTCCAAGGAACCGGGGCCACCGGCTTCTTCACCTTCATCGACAGCCACAAGTCCCACGTCAAAGATGCCGTCACTAAACTCACCGAGTCCAGATCCGAGACTCGAATTGCCGGGTTTGTCATCGACATGTTCTGCACGGGGATGATTGACGTGGCCAACGAATTTGGGCTTCCTAGCTACGTTTTCTACACCTCCGGAGCGGCGGATCTCGGGCTCATGTTCCACCTCCAAGCCCTACGTGATGAAGAGAACAAGGACTGCACCGAGTTCAAGAACTCGGATGCCGAGTTGGTCGTCCCGAGTTTTGTAAATCCCTTGCCGGCTGCTAGAGTCTTGCCTGGTGTGGTTTTCGACAAGGAGGCGTGCAACTTCTTCCTTAACTTTGCCAAAAGGTATAGAGAGACCAAGGGTCTTTTGGTTAACACGTTCCTGGAGCTGGAATCTCACGCTCTTCAGTCTCTCAGTTCGGACGGTAAGATCCCTCCGGTGTACCCGGTGGGACCCATATTGAACGTCAAGAGCAATGATAACCAAGTGAGTTCAGAGAAGTCGAAGCAGAAGTCGGATATCTTGAAGTGGCTTGATGACCAGCCTCCGTTGTCTGTAGTGTTCTTGTGCTTCGGAAGCATGGGATGCTTTGGCGAGGACCAAGTAAAAGAGATGGCACACGGACTCGAGCAAGCTGGGTTTCGGTTCTTGTGGTCTCTACGCCAGCCCCCGACGAGCAAGATTGGTTTTCCAAGTGATTACGCGGATTACGGTACCATCTTGCCAGAAGGGTTTCTCGATCGGACGGCTGAGATTGGGAAAGTCATAGGGTGGGCCCCGCAGGTGGCTATCTTGGCTCATCCGGCGGTCGGAGGATTTGTGTCTCATTGCGGGTGGAACTCTACGCTGGAAAGTATTTGGTATGGTGTGCCGATTGCCACGTGGCCGTTTTATGCCGAGCAACAAGTGAATGCCTTTGAGCTGGTGAAGGAATTGAAATTGGCTGTTGAGATCGACATGGGTTATAGAAAGGACAGTGGGGTGATTGTGAGTAGGCAAGACATAGAGAAAGCGATAAAGCAGGTAATGGAGCAAGATAGTGAAATAAGGACGAGGGTGAAAGAAATGAGTCAAATGAGCCAGAAAGCTTTGGCGGATGATGGGTCCTCATTCTCTTCATTAGGGCGTTTTATTGATCAAATTCAAAGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

477

Amino Acids

52.9

Weight (kDa)

5.22

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	275 - 440	7.1e-24	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1051
Acc36I	ACCTGC	2 cut(s)	1051, 1291
Acc65I	GGTACC	1 cut(s)	992
AccB1I	GGYRCC	1 cut(s)	992
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	431
AccII	CGCG	1 cut(s)	983
AccIII	TCCGGA	1 cut(s)	425
AciI	CCGC	8 cut(s)	141, 431, 434, 983, 1058, 1085, 1110, 1373
AclWI	GGATC	3 cut(s)	318, 444, 703
AcoI	YGGCCR	3 cut(s)	46, 384, 1163
AcsI	RAATTY	2 cut(s)	392, 1419
AcuI	CTGAAG	1 cut(s)	668
AcvI	CACGTG	1 cut(s)	1161
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	722, 994
AfiI	CCNNNNNNNGG	5 cut(s)	38, 44, 667, 1063, 1088
AflIII	ACRYGT	2 cut(s)	357, 654
AgsI	TTSAA	6 cut(s)	190, 502, 742, 805, 1216, 1424
AhdI	GACNNNNNGTC	1 cut(s)	639
AjiI	CACGTC	2 cut(s)	289, 382
AjnI	CCWGG	3 cut(s)	37, 568, 660
AluBI	AGCT	9 cut(s)	11, 19, 79, 408, 667, 914, 1201, 1367, 1428
AluI	AGCT	9 cut(s)	11, 19, 79, 408, 667, 914, 1201, 1367, 1428
Alw26I	GTCTC	5 cut(s)	323, 626, 693, 939, 1107
AlwI	GGATC	3 cut(s)	318, 444, 703
Ama87I	CYCGRG	4 cut(s)	90, 440, 529, 905
Aor13HI	TCCGGA	1 cut(s)	425
AoxI	GGCC	5 cut(s)	46, 246, 384, 1053, 1163
ApaI	GGGCCC	1 cut(s)	1057
ApeKI	GCWGC	3 cut(s)	150, 196, 554
ApoI	RAATTY	2 cut(s)	392, 1419
ArsI	GACNNNNNNTTYG	4 cut(s)	285, 317, 776, 808
Asp700I	GAANNNNTTC	1 cut(s)	1011
Asp718I	GGTACC	1 cut(s)	992
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	6 cut(s)	246, 731, 877, 1053, 1054, 1383
AsuC2I	CCSGG	3 cut(s)	244, 343, 725
AsuHPI	GGTGA	6 cut(s)	130, 253, 304, 1216, 1273, 1348
AvaI	CYCGRG	4 cut(s)	90, 440, 529, 905
AvaII	GGWCC	3 cut(s)	731, 877, 1383
BaeGI	GKGCMC	1 cut(s)	1057
BalI	TGGCCA	2 cut(s)	48, 386
BanI	GGYRCC	1 cut(s)	992
BanII	GRGCYC	2 cut(s)	447, 1057
BauI	CACGAG	1 cut(s)	1429
BbrPI	CACGTG	1 cut(s)	1161
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	3 cut(s)	162, 208, 541
BccI	CCATC	3 cut(s)	886, 1004, 1373
BceAI	ACGGC	4 cut(s)	163, 284, 1041, 1150
BcgI	CGANNNNNNTGC	4 cut(s)	165, 190, 199, 224
BciT130I	CCWGG	3 cut(s)	39, 570, 662
BclI	TGATCA	1 cut(s)	1414
BcnI	CCSGG	3 cut(s)	244, 343, 725
BcoDI	GTCTC	5 cut(s)	323, 626, 693, 939, 1107
BfaI	CTAG	2 cut(s)	405, 558
BfmI	CTRYAG	1 cut(s)	834
BfuAI	ACCTGC	2 cut(s)	1051, 1291
BisI	GCNGC	4 cut(s)	151, 197, 432, 555
BlsI	GCNGC	4 cut(s)	152, 198, 433, 556
Bme1390I	CCNGG	6 cut(s)	39, 244, 343, 570, 662, 725
Bme18I	GGWCC	3 cut(s)	731, 877, 1383
BmeRI	GACNNNNNGTC	1 cut(s)	639
BmeT110I	CYCGRG	4 cut(s)	90, 440, 529, 905
BmgBI	CACGTC	2 cut(s)	289, 382
BmgT120I	GGNCC	6 cut(s)	246, 731, 877, 1053, 1054, 1383
BmiI	GGNNCC	8 cut(s)	241, 247, 732, 733, 994, 1055, 1056, 1384
BmrFI	CCNGG	6 cut(s)	39, 244, 343, 570, 662, 725
BmsI	GCATC	4 cut(s)	210, 286, 502, 854
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	683
BpuMI	CCSGG	3 cut(s)	244, 343, 725
BsaAI	YACGTR	2 cut(s)	470, 1161
BsaBI	GATNNNNATC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	2 cut(s)	626, 939
BsaJI	CCNNGG	6 cut(s)	37, 38, 171, 235, 243, 636
BsaWI	WCCGGW	2 cut(s)	425, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 44, 667, 1063, 1088
Bse118I	RCCGGY	2 cut(s)	251, 550
Bse3DI	GCAATG	2 cut(s)	760, 1105
Bse8I	GATNNNNATC	1 cut(s)	26
BseAI	TCCGGA	1 cut(s)	425
BseBI	CCWGG	3 cut(s)	39, 570, 662
BseDI	CCNNGG	6 cut(s)	37, 38, 171, 235, 243, 636
BseGI	GGATG	6 cut(s)	27, 378, 517, 869, 1078, 1381
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	5 cut(s)	38, 44, 667, 1063, 1088
BseMI	GCAATG	2 cut(s)	760, 1105
BseMII	CTCAG	2 cut(s)	706, 1020
BseRI	GAGGAG	2 cut(s)	71, 74
BseSI	GKGCMC	1 cut(s)	1057
BseXI	GCAGC	3 cut(s)	162, 208, 541
BseYI	CCCAGC	1 cut(s)	914
BsgI	GTGCAG	2 cut(s)	349, 475
Bsh1236I	CGCG	1 cut(s)	983
Bsh1285I	CGRYCG	2 cut(s)	1021, 1089
BshFI	GGCC	5 cut(s)	48, 248, 386, 1055, 1165
BshNI	GGYRCC	1 cut(s)	992
BsiEI	CGRYCG	2 cut(s)	1021, 1089
BsiHKCI	CYCGRG	4 cut(s)	90, 440, 529, 905
BsiSI	CCGG	8 cut(s)	243, 252, 342, 426, 551, 716, 725, 1082
BslFI	GGGAC	3 cut(s)	268, 512, 744
BslI	CCNNNNNNNGG	5 cut(s)	38, 44, 667, 1063, 1088
BsmAI	GTCTC	5 cut(s)	323, 626, 693, 939, 1107
BsmFI	GGGAC	3 cut(s)	268, 512, 744
BsmI	GAATGC	1 cut(s)	1195
BsnI	GGCC	5 cut(s)	48, 248, 386, 1055, 1165
Bso31I	GGTCTC	2 cut(s)	626, 939
BsoBI	CYCGRG	4 cut(s)	90, 440, 529, 905
Bsp120I	GGGCCC	1 cut(s)	1053
Bsp1286I	GDGCHC	2 cut(s)	447, 1057
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	8 cut(s)	21, 69, 323, 436, 708, 1018, 1230, 1414
BspACI	CCGC	8 cut(s)	141, 431, 434, 983, 1058, 1085, 1110, 1373
BspANI	GGCC	5 cut(s)	48, 248, 386, 1055, 1165
BspCNI	CTCAG	2 cut(s)	705, 1021
BspEI	TCCGGA	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	983
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	8 cut(s)	241, 247, 732, 733, 994, 1055, 1056, 1384
BspMI	ACCTGC	2 cut(s)	1051, 1291
BspPI	GGATC	3 cut(s)	318, 444, 703
BspQI	GCTCTTC	1 cut(s)	687
BspT107I	GGYRCC	1 cut(s)	992
BspTNI	GGTCTC	2 cut(s)	626, 939
BsrBI	CCGCTC	1 cut(s)	431
BsrDI	GCAATG	2 cut(s)	760, 1105
BsrFI	RCCGGY	2 cut(s)	251, 550
BssAI	RCCGGY	2 cut(s)	251, 550
BssECI	CCNNGG	6 cut(s)	37, 38, 171, 235, 243, 636
BssMI	GATC	8 cut(s)	21, 69, 323, 436, 708, 1018, 1230, 1414
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	1429
BssT1I	CCWWGG	3 cut(s)	171, 235, 636
Bst2BI	CACGAG	1 cut(s)	1429
Bst2UI	CCWGG	3 cut(s)	39, 570, 662
Bst4CI	ACNGT	4 cut(s)	64, 704, 992, 1256
Bst6I	CTCTTC	4 cut(s)	110, 471, 687, 1399
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	864
BstBAI	YACGTR	2 cut(s)	470, 1161
BstC8I	GCNNGC	4 cut(s)	552, 595, 912, 944
BstDEI	CTNAG	2 cut(s)	692, 1029
BstF5I	GGATG	6 cut(s)	27, 378, 517, 869, 1078, 1381
BstFNI	CGCG	1 cut(s)	983
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	8 cut(s)	24, 72, 326, 439, 711, 1021, 1233, 1417
BstMAI	GTCTC	5 cut(s)	323, 626, 693, 939, 1107
BstMBI	GATC	8 cut(s)	21, 69, 323, 436, 708, 1018, 1230, 1414
BstMCI	CGRYCG	2 cut(s)	1021, 1089
BstMWI	GCNNNNNNNGC	4 cut(s)	855, 864, 1073, 1082
BstNI	CCWGG	3 cut(s)	39, 570, 662
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	6 cut(s)	37, 242, 341, 568, 660, 723
BstSFI	CTRYAG	1 cut(s)	834
BstSLI	GKGCMC	1 cut(s)	1057
BstUI	CGCG	1 cut(s)	983
BstV1I	GCAGC	3 cut(s)	162, 208, 541
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	3 cut(s)	323, 436, 708
BstYI	RGATCY	3 cut(s)	323, 436, 708
BsuRI	GGCC	5 cut(s)	48, 248, 386, 1055, 1165
BtrI	CACGTC	2 cut(s)	289, 382
BtsCI	GGATG	6 cut(s)	27, 378, 517, 869, 1078, 1381
BtsIMutI	CAGTG	1 cut(s)	1261
BveI	ACCTGC	2 cut(s)	1051, 1291
Cac8I	GCNNGC	4 cut(s)	552, 595, 912, 944
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	2 cut(s)	251, 550
Cfr13I	GGNCC	6 cut(s)	246, 731, 877, 1053, 1054, 1383
CseI	GACGC	2 cut(s)	164, 202
Csp6I	GTAC	2 cut(s)	721, 993
CviAII	CATG	5 cut(s)	124, 358, 448, 859, 1237
CviQI	GTAC	2 cut(s)	721, 993
DdeI	CTNAG	2 cut(s)	692, 1029
DpnI	GATC	8 cut(s)	23, 71, 325, 438, 710, 1020, 1232, 1416
DpnII	GATC	8 cut(s)	21, 69, 323, 436, 708, 1018, 1230, 1414
DriI	GACNNNNNGTC	1 cut(s)	639
EaeI	YGGCCR	3 cut(s)	46, 384, 1163
Eam1104I	CTCTTC	4 cut(s)	110, 471, 687, 1399
Eam1105I	GACNNNNNGTC	1 cut(s)	639
EarI	CTCTTC	4 cut(s)	110, 471, 687, 1399
EciI	GGCGGA	2 cut(s)	449, 1388
Eco130I	CCWWGG	3 cut(s)	171, 235, 636
Eco24I	GRGCYC	2 cut(s)	447, 1057
Eco31I	GGTCTC	2 cut(s)	626, 939
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	3 cut(s)	731, 877, 1383
Eco57I	CTGAAG	1 cut(s)	668
Eco72I	CACGTG	1 cut(s)	1161
Eco88I	CYCGRG	4 cut(s)	90, 440, 529, 905
EcoO109I	RGGNCCY	3 cut(s)	731, 1054, 1383
EcoRII	CCWGG	3 cut(s)	37, 568, 660
EcoRV	GATATC	1 cut(s)	799
EcoT14I	CCWWGG	3 cut(s)	171, 235, 636
EcoT38I	GRGCYC	2 cut(s)	447, 1057
ErhI	CCWWGG	3 cut(s)	171, 235, 636
FaeI	CATG	5 cut(s)	127, 361, 451, 862, 1240
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	3 cut(s)	268, 512, 744
FatI	CATG	5 cut(s)	123, 357, 447, 858, 1236
FauI	CCCGC	2 cut(s)	1065, 1103
FbaI	TGATCA	1 cut(s)	1414
Fnu4HI	GCNGC	4 cut(s)	151, 197, 432, 555
FokI	GGATG	6 cut(s)	14, 385, 524, 876, 1065, 1388
FriOI	GRGCYC	2 cut(s)	447, 1057
Fsp4HI	GCNGC	4 cut(s)	151, 197, 432, 555
FspBI	CTAG	2 cut(s)	405, 558
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	4 cut(s)	151, 197, 432, 555
GsaI	CCCAGC	1 cut(s)	918
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	5 cut(s)	48, 248, 386, 1055, 1165
HapII	CCGG	8 cut(s)	243, 252, 342, 426, 551, 716, 725, 1082
HgaI	GACGC	2 cut(s)	164, 202
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	5 cut(s)	127, 361, 451, 862, 1240
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HindIII	AAGCTT	2 cut(s)	9, 1365
HinfI	GANTC	6 cut(s)	317, 331, 561, 671, 903, 1348
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	8 cut(s)	243, 252, 342, 426, 551, 716, 725, 1082
HphI	GGTGA	6 cut(s)	130, 253, 304, 1216, 1273, 1348
Hpy166II	GTNNAC	2 cut(s)	652, 721
Hpy188I	TCNGA	9 cut(s)	16, 328, 511, 700, 775, 796, 854, 1023, 1091
Hpy8I	GTNNAC	2 cut(s)	652, 721
Hpy99I	CGWCG	3 cut(s)	158, 187, 955
HpyAV	CCTTC	4 cut(s)	145, 274, 1001, 1201
HpyCH4III	ACNGT	4 cut(s)	64, 704, 992, 1256
HpyCH4IV	ACGT	7 cut(s)	288, 381, 411, 469, 656, 744, 1160
HpyCH4V	TGCA	3 cut(s)	366, 492, 597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	855, 864, 1073, 1082
HpyF3I	CTNAG	2 cut(s)	692, 1029
HpySE526I	ACGT	7 cut(s)	288, 381, 411, 469, 656, 744, 1160
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	5 cut(s)	127, 361, 451, 862, 1240
HspAI	GCGC	1 cut(s)	199
KflI	GGGWCCC	1 cut(s)	731
Kpn2I	TCCGGA	1 cut(s)	425
KpnI	GGTACC	1 cut(s)	996
KroI	GCCGGC	1 cut(s)	550
KroNI	GCCGGC	1 cut(s)	552
Ksp22I	TGATCA	1 cut(s)	1414
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	8 cut(s)	21, 69, 323, 436, 708, 1018, 1230, 1414
LguI	GCTCTTC	1 cut(s)	687
LmnI	GCTCC	4 cut(s)	84, 428, 664, 1309
Lsp1109I	GCAGC	3 cut(s)	162, 208, 541
LweI	GCATC	4 cut(s)	210, 286, 502, 854
MaeI	CTAG	2 cut(s)	405, 558
MaeII	ACGT	7 cut(s)	288, 381, 411, 469, 656, 744, 1160
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	8 cut(s)	23, 71, 325, 438, 710, 1020, 1232, 1416
MbiI	CCGCTC	1 cut(s)	431
MboI	GATC	8 cut(s)	21, 69, 323, 436, 708, 1018, 1230, 1414
MboII	GAAGA	9 cut(s)	16, 16, 97, 202, 250, 488, 595, 674, 1386
MflI	RGATCY	3 cut(s)	323, 436, 708
MhlI	GDGCHC	2 cut(s)	447, 1057
MlsI	TGGCCA	2 cut(s)	48, 386
MluCI	AATT	6 cut(s)	230, 336, 392, 1211, 1217, 1419
MluNI	TGGCCA	2 cut(s)	48, 386
MlyI	GAGTC	5 cut(s)	325, 326, 570, 897, 1357
MmeI	TCCRAC	2 cut(s)	774, 1069
Mox20I	TGGCCA	2 cut(s)	48, 386
MroI	TCCGGA	1 cut(s)	425
MroNI	GCCGGC	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	1011
MscI	TGGCCA	2 cut(s)	48, 386
MseI	TTAA	2 cut(s)	609, 651
MslI	CAYNNNNRTG	2 cut(s)	356, 371
Msp20I	TGGCCA	2 cut(s)	48, 386
MspI	CCGG	8 cut(s)	243, 252, 342, 426, 551, 716, 725, 1082
MspR9I	CCNGG	6 cut(s)	39, 244, 343, 570, 662, 725
Mva1269I	GAATGC	1 cut(s)	1195
MvaI	CCWGG	3 cut(s)	39, 570, 662
MvnI	CGCG	1 cut(s)	983
MwoI	GCNNNNNNNGC	4 cut(s)	855, 864, 1073, 1082
NaeI	GCCGGC	1 cut(s)	552
NciI	CCSGG	3 cut(s)	244, 343, 725
NdeII	GATC	8 cut(s)	21, 69, 323, 436, 708, 1018, 1230, 1414
NgoMIV	GCCGGC	1 cut(s)	550
NlaIII	CATG	5 cut(s)	127, 361, 451, 862, 1240
NlaIV	GGNNCC	8 cut(s)	241, 247, 732, 733, 994, 1055, 1056, 1384
NmeAIII	GCCGAG	2 cut(s)	541, 1201
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	361
PaeR7I	CTCGAG	1 cut(s)	905
PagI	TCATGA	1 cut(s)	123
PaqCI	CACCTGC	1 cut(s)	1051
PasI	CCCWGGG	1 cut(s)	38
PciI	ACATGT	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	1 cut(s)	1195
PdiI	GCCGGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	1011
PfeI	GAWTC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	660
PkrI	GCNGC	4 cut(s)	152, 198, 433, 556
Ple19I	CGATCG	1 cut(s)	1021
PleI	GAGTC	5 cut(s)	325, 325, 569, 897, 1356
PmaCI	CACGTG	1 cut(s)	1161
PmlI	CACGTG	1 cut(s)	1161
PpsI	GAGTC	5 cut(s)	325, 325, 569, 897, 1356
Ppu21I	YACGTR	2 cut(s)	470, 1161
PpuMI	RGGWCCY	2 cut(s)	731, 1383
PscI	ACATGT	1 cut(s)	357
Psp5II	RGGWCCY	2 cut(s)	731, 1383
Psp6I	CCWGG	3 cut(s)	37, 568, 660
PspCI	CACGTG	1 cut(s)	1161
PspFI	CCCAGC	1 cut(s)	914
PspGI	CCWGG	3 cut(s)	37, 568, 660
PspN4I	GGNNCC	8 cut(s)	241, 247, 732, 733, 994, 1055, 1056, 1384
PspOMI	GGGCCC	1 cut(s)	1053
PspPI	GGNCC	6 cut(s)	246, 731, 877, 1053, 1054, 1383
PspPPI	RGGWCCY	2 cut(s)	731, 1383
PspXI	VCTCGAGB	1 cut(s)	905
PsuI	RGATCY	3 cut(s)	323, 436, 708
PvuI	CGATCG	1 cut(s)	1021
RsaI	GTAC	2 cut(s)	722, 994
RsaNI	GTAC	2 cut(s)	721, 993
RseI	CAYNNNNRTG	2 cut(s)	356, 371
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	609, 651
SatI	GCNGC	4 cut(s)	151, 197, 432, 555
Sau3AI	GATC	8 cut(s)	21, 69, 323, 436, 708, 1018, 1230, 1414
Sau96I	GGNCC	6 cut(s)	246, 731, 877, 1053, 1054, 1383
SchI	GAGTC	5 cut(s)	325, 326, 570, 897, 1357
ScrFI	CCNGG	6 cut(s)	39, 244, 343, 570, 662, 725
SduI	GDGCHC	2 cut(s)	447, 1057
SfaNI	GCATC	4 cut(s)	210, 286, 502, 854
SfcI	CTRYAG	1 cut(s)	834
Sfr274I	CTCGAG	1 cut(s)	905
SinI	GGWCC	3 cut(s)	731, 877, 1383
SlaI	CTCGAG	1 cut(s)	905
SmiMI	CAYNNNNRTG	2 cut(s)	356, 371
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
Sse9I	AATT	6 cut(s)	230, 336, 392, 1211, 1217, 1419
SsiI	CCGC	8 cut(s)	141, 431, 434, 983, 1058, 1085, 1110, 1373
SspMI	CTAG	2 cut(s)	405, 558
StyD4I	CCNGG	6 cut(s)	37, 242, 341, 568, 660, 723
StyI	CCWWGG	3 cut(s)	171, 235, 636
TaaI	ACNGT	4 cut(s)	64, 704, 992, 1256
TaiI	ACGT	7 cut(s)	291, 384, 414, 472, 659, 747, 1163
TaqI	TCGA	8 cut(s)	270, 334, 354, 582, 782, 906, 1017, 1233
TasI	AATT	6 cut(s)	230, 336, 392, 1211, 1217, 1419
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	2 cut(s)	609, 651
Tru9I	TTAA	2 cut(s)	609, 651
TscAI	CASTG	1 cut(s)	1261
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	3 cut(s)	150, 196, 554
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	7 cut(s)	16, 17, 97, 140, 256, 489, 1386
TspGWI	ACGGA	2 cut(s)	816, 915
TspRI	CASTG	1 cut(s)	1261
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	3 cut(s)	731, 877, 1383
XapI	RAATTY	2 cut(s)	392, 1419
XceI	RCATGY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	1011
XspI	CTAG	2 cut(s)	405, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.