Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018149.1

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 402

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018149.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgggaagctttagcgaggaccaggtgaaagagattgcccacgccttagagcacgcgggccatcagttcttgttgtccttatgtcggtcttcacccactggaagaatttcttctccaagtgactacgatgaccacactggagtcttgcccgaagggttccttgatcgaacaattgggattggaaaggtcataggctgggccccgcaagttgccatcttggctcacccatctgtgagaggatttgtatcccattgtggatggaattccactcttgaaagtctttggcacggtgtgcccatttccacatggccattgtacgcagagcaacagcttaacgtgtttcagctagtgaaggaattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

120

Amino Acids

13.21

Weight (kDa)

5.71

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AciI	CCGC	2 cut(s)	56, 203
AcoI	YGGCCR	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	105, 262
AdeI	CACNNNGTG	1 cut(s)	292
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	3 cut(s)	9, 331, 346
AluI	AGCT	3 cut(s)	9, 331, 346
Alw21I	GWGCWC	1 cut(s)	54
AoxI	GGCC	3 cut(s)	58, 198, 308
ApaI	GGGCCC	1 cut(s)	202
ApoI	RAATTY	2 cut(s)	105, 262
Asp700I	GAANNNNTTC	2 cut(s)	106, 109
AspS9I	GGNCC	4 cut(s)	19, 58, 198, 199
AsuHPI	GGTGA	3 cut(s)	37, 84, 215
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	2 cut(s)	202, 297
BalI	TGGCCA	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	54
BccI	CCATC	4 cut(s)	69, 221, 235, 252
BciT130I	CCWGG	1 cut(s)	23
BciVI	GTATCC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	256
BglI	GCCNNNNNGGC	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	4 cut(s)	19, 58, 198, 199
BmiI	GGNNCC	3 cut(s)	158, 200, 201
BmrFI	CCNGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	103, 142
Bse8I	GATNNNNATC	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	263
BseJI	GATNNNNATC	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	103, 142
BseSI	GKGCMC	2 cut(s)	202, 297
BseYI	CCCAGC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	3 cut(s)	60, 200, 310
BsiHKAI	GWGCWC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	84
BsnI	GGCC	3 cut(s)	60, 200, 310
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	3 cut(s)	54, 202, 297
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	2 cut(s)	56, 203
BspANI	GGCC	3 cut(s)	60, 200, 310
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	3 cut(s)	158, 200, 201
BsrI	ACTGG	2 cut(s)	103, 142
BssMI	GATC	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	54, 58
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	263
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 292
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSLI	GKGCMC	2 cut(s)	202, 297
BstUI	CGCG	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	60, 200, 310
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	2 cut(s)	96, 135
Cac8I	GCNNGC	2 cut(s)	54, 58
Cfr13I	GGNCC	4 cut(s)	19, 58, 198, 199
CsiI	ACCWGGT	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	306
CviJI	RGCY	8 cut(s)	9, 60, 195, 200, 221, 310, 331, 346
CviKI_1	RGCY	8 cut(s)	9, 60, 195, 200, 221, 310, 331, 346
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DraIII	CACNNNGTG	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	1 cut(s)	309
FaiI	YATR	3 cut(s)	82, 191, 307
FalI	AAGNNNNNCTT	4 cut(s)	94, 126, 144, 176
FatI	CATG	1 cut(s)	305
FauI	CCCGC	2 cut(s)	49, 210
FokI	GGATG	1 cut(s)	270
FriOI	GRGCYC	1 cut(s)	202
FspBI	CTAG	1 cut(s)	347
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	60, 200, 310
Hin1II	CATG	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	1 cut(s)	141
HphI	GGTGA	3 cut(s)	37, 84, 215
Hpy188III	TCNNGA	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	146, 346
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 292
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	8, 35, 84, 123, 181
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	81, 102, 114
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	3 cut(s)	54, 202, 297
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	4 cut(s)	105, 171, 262, 356
MluNI	TGGCCA	1 cut(s)	310
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	2 cut(s)	10, 230
Mox20I	TGGCCA	1 cut(s)	310
MroXI	GAANNNNTTC	2 cut(s)	106, 109
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	218, 292
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	309
NlaIV	GGNNCC	3 cut(s)	158, 200, 201
NmuCI	GTSAC	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	106, 109
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	3 cut(s)	158, 200, 201
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	4 cut(s)	19, 58, 198, 199
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	4 cut(s)	19, 58, 198, 199
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	3 cut(s)	54, 202, 297
SetI	ASST	6 cut(s)	11, 27, 189, 333, 339, 348
SexAI	ACCWGGT	1 cut(s)	21
SinI	GGWCC	1 cut(s)	19
Sse9I	AATT	4 cut(s)	105, 171, 262, 356
SsiI	CCGC	2 cut(s)	56, 203
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	166
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	4 cut(s)	105, 171, 262, 356
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	2 cut(s)	103, 142
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspRI	CASTG	2 cut(s)	103, 142
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	2 cut(s)	105, 262
XmnI	GAANNNNTTC	2 cut(s)	106, 109
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.